[package - 140releng-powerpc-quarterly][biology/vcflib] Failed for vcflib-1.0.7 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Mon, 19 Feb 2024 23:38:55 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul1/data/140releng-powerpc-quarterly/aa3532662c1f/logs/vcflib-1.0.7.log
Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=140releng-powerpc-quarterly&build=aa3532662c1f
Log:
=>> Building biology/vcflib
build started at Mon Feb 19 23:38:09 UTC 2024
port directory: /usr/ports/biology/vcflib
package name: vcflib-1.0.7
building for: FreeBSD 140releng-powerpc-quarterly-job-05 14.0-RELEASE-p4 FreeBSD 14.0-RELEASE-p4 1400097 powerpc
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1806 Feb 3 01:03 /usr/ports/biology/vcflib/Makefile
Ports top last git commit: aa3532662
Ports top unclean checkout: no
Port dir last git commit: aa3532662
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500003
Jail OSVERSION: 1400097
Job Id: 05
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1400097
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=powerpc
UNAME_p=powerpc
UNAME_r=14.0-RELEASE-p4
LOCALBASE=/usr/local
UNAME_v=FreeBSD 14.0-RELEASE-p4 1400097
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1
MASTERMNT=/usr/local/poudriere/data/.m/140releng-powerpc-quarterly/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/140releng-powerpc-quarterly/05/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=140releng-powerpc-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/140releng-powerpc-quarterly/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for vcflib-1.0.7:
ZIG=off: Include Zig language support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/vcflib/work/.cache HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/vcflib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/vcflib/work/.cache HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/vcflib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM
="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
ZIG="@comment " NO_ZIG="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/vcflib" EXAMPLESDIR="share/examples/vcflib" DATADIR="share/vcflib" WWWDIR="www/vcflib" ETCDIR="etc/vcflib"
--End PLIST_SUB--
--SUB_LIST--
ZIG="@comment " NO_ZIG="" PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/vcflib DOCSDIR=/usr/local/share/doc/vcflib EXAMPLESDIR=/usr/local/share/examples/vcflib WWWDIR=/usr/local/www/vcflib ETCDIR=/usr/local/etc/vcflib
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=powerpc
MACHINE_ARCH=powerpc
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> vcflib-1.0.7 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[140releng-powerpc-quarterly-job-05] Installing pkg-1.20.9...
[140releng-powerpc-quarterly-job-05] Extracting pkg-1.20.9: .......... done
===> vcflib-1.0.7 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of vcflib-1.0.7
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.7 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.7 for building
=> SHA256 Checksum OK for ekg-vcflib-v1.0.7_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-bb33265_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-df20dcc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-56695e1_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-aa59377_GH0.tar.gz.
=> SHA256 Checksum OK for edawson-libVCFH-44b6580_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-e1f94ae_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-2610e25_GH0.tar.gz.
=> SHA256 Checksum OK for simd-everywhere-simde-no-tests-9af03cd_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-tabixpp-v1.1.2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.7 for building
===> Extracting for vcflib-1.0.7
=> SHA256 Checksum OK for ekg-vcflib-v1.0.7_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-bb33265_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-df20dcc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-56695e1_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-aa59377_GH0.tar.gz.
=> SHA256 Checksum OK for edawson-libVCFH-44b6580_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-e1f94ae_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-2610e25_GH0.tar.gz.
=> SHA256 Checksum OK for simd-everywhere-simde-no-tests-9af03cd_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-tabixpp-v1.1.2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for vcflib-1.0.7
===> Applying FreeBSD patches for vcflib-1.0.7 from /usr/ports/biology/vcflib/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
<snip>
[140releng-powerpc-quarterly-job-05] `-- Installing expat-2.5.0...
[140releng-powerpc-quarterly-job-05] `-- Extracting expat-2.5.0: .......... done
[140releng-powerpc-quarterly-job-05] `-- Installing jsoncpp-1.9.5...
[140releng-powerpc-quarterly-job-05] `-- Extracting jsoncpp-1.9.5: .......... done
[140releng-powerpc-quarterly-job-05] `-- Installing libuv-1.47.0...
[140releng-powerpc-quarterly-job-05] `-- Extracting libuv-1.47.0: .......... done
[140releng-powerpc-quarterly-job-05] `-- Installing rhash-1.4.4...
[140releng-powerpc-quarterly-job-05] | `-- Installing gettext-runtime-0.22.3...
[140releng-powerpc-quarterly-job-05] | | `-- Installing indexinfo-0.3.1...
[140releng-powerpc-quarterly-job-05] | | `-- Extracting indexinfo-0.3.1: .... done
[140releng-powerpc-quarterly-job-05] | `-- Extracting gettext-runtime-0.22.3: .......... done
[140releng-powerpc-quarterly-job-05] `-- Extracting rhash-1.4.4: .......... done
[140releng-powerpc-quarterly-job-05] Extracting cmake-core-3.28.1: .......... done
===> vcflib-1.0.7 depends on file: /usr/local/bin/cmake - found
===> Returning to build of vcflib-1.0.7
===> vcflib-1.0.7 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[140releng-powerpc-quarterly-job-05] Installing gmake-4.3_2...
[140releng-powerpc-quarterly-job-05] Extracting gmake-4.3_2: .......... done
===> vcflib-1.0.7 depends on package: gmake>=4.3 - found
===> Returning to build of vcflib-1.0.7
===> vcflib-1.0.7 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.0.3_1,1.pkg
[140releng-powerpc-quarterly-job-05] Installing pkgconf-2.0.3_1,1...
[140releng-powerpc-quarterly-job-05] Extracting pkgconf-2.0.3_1,1: .......... done
===> vcflib-1.0.7 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of vcflib-1.0.7
===> vcflib-1.0.7 depends on file: /usr/local/bin/python3.9 - not found
===> Installing existing package /packages/All/python39-3.9.18.pkg
[140releng-powerpc-quarterly-job-05] Installing python39-3.9.18...
[140releng-powerpc-quarterly-job-05] `-- Installing libffi-3.4.4...
[140releng-powerpc-quarterly-job-05] `-- Extracting libffi-3.4.4: .......... done
[140releng-powerpc-quarterly-job-05] `-- Installing mpdecimal-2.5.1...
[140releng-powerpc-quarterly-job-05] `-- Extracting mpdecimal-2.5.1: .......... done
[140releng-powerpc-quarterly-job-05] `-- Installing readline-8.2.7...
[140releng-powerpc-quarterly-job-05] `-- Extracting readline-8.2.7: .......... done
[140releng-powerpc-quarterly-job-05] Extracting python39-3.9.18: .......... done
=====
Message from python39-3.9.18:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> vcflib-1.0.7 depends on file: /usr/local/bin/python3.9 - found
===> Returning to build of vcflib-1.0.7
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> vcflib-1.0.7 depends on shared library: libhts.so - not found
===> Installing existing package /packages/All/htslib-1.17.pkg
[140releng-powerpc-quarterly-job-05] Installing htslib-1.17...
[140releng-powerpc-quarterly-job-05] `-- Installing curl-8.5.0...
[140releng-powerpc-quarterly-job-05] | `-- Installing libnghttp2-1.58.0...
[140releng-powerpc-quarterly-job-05] | `-- Extracting libnghttp2-1.58.0: .......... done
[140releng-powerpc-quarterly-job-05] | `-- Installing libpsl-0.21.2_4...
[140releng-powerpc-quarterly-job-05] | | `-- Installing libidn2-2.3.4...
[140releng-powerpc-quarterly-job-05] | | `-- Installing libunistring-1.1...
[140releng-powerpc-quarterly-job-05] | | `-- Extracting libunistring-1.1: .......... done
[140releng-powerpc-quarterly-job-05] | | `-- Extracting libidn2-2.3.4: .......... done
[140releng-powerpc-quarterly-job-05] | `-- Extracting libpsl-0.21.2_4: .......... done
[140releng-powerpc-quarterly-job-05] | `-- Installing libssh2-1.11.0,3...
[140releng-powerpc-quarterly-job-05] | `-- Extracting libssh2-1.11.0,3: .......... done
[140releng-powerpc-quarterly-job-05] `-- Extracting curl-8.5.0: .......... done
[140releng-powerpc-quarterly-job-05] `-- Installing libdeflate-1.19...
[140releng-powerpc-quarterly-job-05] `-- Extracting libdeflate-1.19: .......... done
[140releng-powerpc-quarterly-job-05] Extracting htslib-1.17: .......... done
===> vcflib-1.0.7 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so)
===> Returning to build of vcflib-1.0.7
===> vcflib-1.0.7 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so)
===> vcflib-1.0.7 depends on shared library: libwfa2.so - not found
===> Installing existing package /packages/All/wfa2-lib-2.3.4.pkg
[140releng-powerpc-quarterly-job-05] Installing wfa2-lib-2.3.4...
[140releng-powerpc-quarterly-job-05] Extracting wfa2-lib-2.3.4: .......... done
===> vcflib-1.0.7 depends on shared library: libwfa2.so - found (/usr/local/lib/libwfa2.so)
===> Returning to build of vcflib-1.0.7
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for vcflib-1.0.7
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/vcflib/work/.build
-- The C compiler identification is Clang 16.0.6
-- The CXX compiler identification is Clang 16.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.0.3")
CMake Warning (dev) at /usr/local/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/local/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
/usr/local/share/cmake/pybind11/pybind11Common.cmake:188 (include)
/usr/local/share/cmake/pybind11/pybind11Config.cmake:250 (include)
CMakeLists.txt:19 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.18", minimum required is "3.6")
-- Found PythonLibs: /usr/local/lib/libpython3.9.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /usr/local/include (found version "2.11.1")
-- Found BZip2: /usr/lib/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Looking for lzma_auto_decoder in /usr/lib/liblzma.so
-- Looking for lzma_auto_decoder in /usr/lib/liblzma.so - found
-- Looking for lzma_easy_encoder in /usr/lib/liblzma.so
-- Looking for lzma_easy_encoder in /usr/lib/liblzma.so - found
-- Looking for lzma_lzma_preset in /usr/lib/liblzma.so
-- Looking for lzma_lzma_preset in /usr/lib/liblzma.so - found
-- Found LibLZMA: /usr/lib/liblzma.so (found version "5.4.4")
-- Found ZLIB: /usr/lib/libz.so (found version "1.3")
-- Found CURL: /usr/local/lib/libcurl.so (found version "8.5.0")
--
-- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES)
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
-- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - not found
-- Found Threads: TRUE
-- Checking for module 'htslib'
-- Found htslib, version 1.17
-- Checking for module 'tabixpp'
-- Package 'tabixpp', required by 'virtual:world', not found
-- WFA using include /usr/local/include/wfa2lib
Pandoc needs to be installed to generate the man pages
-- Configuring done (24.3s)
-- Generating done (1.7s)
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_SHARED_LINKER_FLAGS
FETCHCONTENT_FULLY_DISCONNECTED
Python3_EXECUTABLE
Python_EXECUTABLE
-- Build files have been written to: /wrkdirs/usr/ports/biology/vcflib/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for vcflib-1.0.7
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
/usr/local/bin/cmake -S/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7 -B/wrkdirs/usr/ports/biology/vcflib/work/.build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/vcflib/work/.build//CMakeFiles/progress.marks
gmake -f CMakeFiles/Makefile2 all
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
cd /wrkdirs/usr/ports/biology/vcflib/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7 /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7 /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles/vcflib.dir/DependInfo.cmake
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
[ 1%] Building CXX object CMakeFiles/vcflib.dir/src/legacy.cpp.o
[ 1%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o
/usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/include -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/fastahack -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/intervaltree -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/smithwaterman -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/multichoose -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/filevercmp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/c-progress-bar -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/tabixpp -I/usr/local/include/wfa2lib NOTFOUND -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++14 -flto=thin -fPIC -MD -MT CMakeFiles/vcflib.dir/src/legacy.cpp.o -MF CMakeFiles/vcflib.dir/src/legacy.cpp.o.d -o CMakeFiles/vcflib.dir/src/legacy.cpp.o
-c /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/src/legacy.cpp
[ 1%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o
/usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/include -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/fastahack -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/intervaltree -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/smithwaterman -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/multichoose -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/filevercmp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/c-progress-bar -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/tabixpp -I/usr/local/include/wfa2lib NOTFOUND -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++14 -flto=thin -fPIC -MD -MT CMakeFiles/vcflib.dir/src/Variant.cpp.o -MF CMakeFiles/vcflib.dir/src/Variant.cpp.o.d -o CMakeFiles/vcflib.dir/src/Variant.cpp
.o -c /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/src/Variant.cpp
/usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/include -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/fastahack -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/intervaltree -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/smithwaterman -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/multichoose -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/filevercmp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/c-progress-bar -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/contrib/tabixpp -I/usr/local/include/wfa2lib NOTFOUND -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++14 -flto=thin -fPIC -MD -MT CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o -MF CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o.d -o CMakeFiles/vcflib.dir/src/vcf-c-a
pi.cpp.o -c /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.7/src/vcf-c-api.cpp
c++: error: no such file or directory: 'NOTFOUND'
gmake[3]: *** [CMakeFiles/vcflib.dir/build.make:93: CMakeFiles/vcflib.dir/src/legacy.cpp.o] Error 1
gmake[3]: *** Waiting for unfinished jobs....
c++: error: no such file or directory: 'NOTFOUND'
gmake[3]: *** [CMakeFiles/vcflib.dir/build.make:79: CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o] Error 1
c++: error: no such file or directory: 'NOTFOUND'
gmake[3]: *** [CMakeFiles/vcflib.dir/build.make:107: CMakeFiles/vcflib.dir/src/Variant.cpp.o] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[2]: *** [CMakeFiles/Makefile2:258: CMakeFiles/vcflib.dir/all] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[1]: *** [Makefile:149: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/vcflib