[package - 132i386-default][math/libRmath] Failed for libRmath-4.3.1 in build
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Date: Fri, 16 Feb 2024 03:20:11 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy15/data/132i386-default/fcb5f1215dc0/logs/libRmath-4.3.1.log
Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=132i386-default&build=fcb5f1215dc0
Log:
=>> Building math/libRmath
build started at Fri Feb 16 03:17:25 UTC 2024
port directory: /usr/ports/math/libRmath
package name: libRmath-4.3.1
building for: FreeBSD 132i386-default-job-12 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 i386
maintained by: ports@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1257 Jun 25 2023 /usr/ports/math/libRmath/Makefile
Ports top last git commit: fcb5f1215dc
Ports top unclean checkout: no
Port dir last git commit: c164bb279f5
Port dir unclean checkout: no
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Jail OSVERSION: 1302001
Job Id: 12
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The libRmath port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> libRmath-4.3.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9_1.pkg
[132i386-default-job-12] Installing pkg-1.20.9_1...
[132i386-default-job-12] Extracting pkg-1.20.9_1: .......... done
===> libRmath-4.3.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libRmath-4.3.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The libRmath port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.3.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The libRmath port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.3.1 for building
=> SHA256 Checksum OK for R-4.3.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
<snip>
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
./configure: : Permission denied
checking for pcre2-config... /usr/local/bin/pcre2-config
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/local/bin/curl-config
checking libcurl version ... 8.5.0
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... yes
checking for lpr... lpr
checking for paperconf... false
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran12 option to support OpenMP... (cached) -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... no
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
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config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
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config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
R is now configured for i386-portbld-freebsd13.2
Source directory: .
Installation directory: /usr/local
C compiler: cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing
Fortran fixed-form compiler: gfortran12 -O -Wl,-rpath=/usr/local/lib/gcc12
Default C++ compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++11 compiler: c++ -std=gnu++11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++14 compiler: c++ -std=gnu++14 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++17 compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++20 compiler: c++ -std=gnu++20 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++23 compiler: c++ -std=gnu++2b -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
Fortran free-form compiler: gfortran12 -Wl,-rpath=/usr/local/lib/gcc12
Obj-C compiler: cc -g -O2 -fobjc-exceptions
Interfaces supported:
External libraries: pcre2, curl
Additional capabilities:
Options enabled: shared BLAS, R profiling
Capabilities skipped: PNG, JPEG, TIFF, NLS, cairo, ICU
Options not enabled: memory profiling
Recommended packages: yes
configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
configure: WARNING: I could not determine a browser
configure: WARNING: I could not determine a PDF viewer
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for libRmath-4.3.1
--- ../../include/Rconfig.h ---
--- Copy ---
--- inc ---
--- ../../include/Rconfig.h ---
(cd ../../include; /usr/bin/make Rconfig.h)
--- Rconfig.h ---
Copying source files
--- inc ---
(cd ../../include; /usr/bin/make Rmath.h)
--- Rmath.h ---
--- Makedeps ---
--- mlutils.d ---
--- d1mach.d ---
making mlutils.d from mlutils.c
--- mlutils.d ---
In file included from mlutils.c:24:
./../nmath.h:44:10: fatal error: 'Rmath.h' file not found
#include <Rmath.h>
^~~~~~~~~
1 error generated.
*** [mlutils.d] Error code 1
make[2]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
making d1mach.d from d1mach.c
1 error
make[2]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
*** [Makedeps] Error code 2
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
1 error
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/libRmath