From nobody Thu Feb 15 23:46:51 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TbWth2b6Nz510Dk for ; Thu, 15 Feb 2024 23:46:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TbWth0sGbz4mVK for ; Thu, 15 Feb 2024 23:46:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1708040812; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=dLHU7zvC1oqR/KlS1qKREWDWSxp8UDyc0g3JERauS6Y=; b=MJ2l9ZbAF7XKPFkkuc2Mex6CuNmfvYYqHQcLt1+olRLSXuuBEJRXCQ7zPWxu81ZScRWK3H z5b0wZrgu/vJ/4uVe/sSYlQQ2ImU9PuFykgyOsFmk3wcxQvL+J/GlEDJHgS18tj7S0b8yU zjuaWleWb89yH/ymjL55RIFBxez8Jv+5diVSSkSoZw6bzHDqmVma9q6hW94JcQGOxi7808 6IKqUSVOxKkc0YLRFWCCYSRAA45k1KK1notcRK8cW+YEQFEiN23HpyPYRsLl1t6Re0p5LS PcEAeL3Af1ybWF16vmUQXtYxN7uQifMassNN0z4wKrYoaiLN1jDV7meMxcUw5g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1708040812; a=rsa-sha256; cv=none; b=GdpZH1H3CO1DB1oXvBDG5khzPHcC7WJh9Sm3PEKxuJIXb/iLATOfSWaiHc+RaSlMZzNG0r //0ruf2xhQlSXmZQzWF3IAafIZK3Ae0HqB90dAZRzo9kw5P//csxv2Wv3mrqM3dJp5NRUF +CwIYZWBv4MRSun6krnPikgTDguwxrHkHXISuS9CG18+GZR6mc4nUOXhNyRejPEzlSBE2p N6b1CfnSrX9lui118syf3FlyRbI6SN3skAcy+UHIEAhIypm+UKmYodhiGvvyADhKiqgxQD sog94Tqi3DEuGB21a1Lz5wxDj65IuGc/+IYTZFy2I2z6nzNOhFY6En2SX7KfFQ== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TbWtg701Tz12RQ for ; Thu, 15 Feb 2024 23:46:51 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 41FNkpBa083042 for ; Thu, 15 Feb 2024 23:46:51 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 41FNkpdq083028; Thu, 15 Feb 2024 23:46:51 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 15 Feb 2024 23:46:51 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202402152346.41FNkpdq083028@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 140releng-powerpc64le-quarterly][biology/iqtree] Failed for iqtree-2.2.2.7 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/b3e5282399eb/logs/iqtree-2.2.2.7.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=b3e5282399eb Log: =>> Building biology/iqtree build started at Thu Feb 15 23:45:42 UTC 2024 port directory: /usr/ports/biology/iqtree package name: iqtree-2.2.2.7 building for: FreeBSD 140releng-powerpc64le-quarterly-job-04 14.0-RC3 FreeBSD 14.0-RC3 1400097 powerpc maintained by: jrm@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1183 Jan 6 01:03 /usr/ports/biology/iqtree/Makefile Ports top last git commit: b3e528239 Ports top unclean checkout: no Port dir last git commit: 756e18783 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500000 Jail OSVERSION: 1400097 Job Id: 04 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RC3 1400097 UNAME_r=14.0-RC3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/04/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140releng-powerpc64le-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for iqtree-2.2.2.7: EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jrm@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/iqtree/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/iqtree" EXAMPLESDIR="share/examples/iqtree" DATADIR="share/iqtree" WWWDIR="www/iqtree" ETCDIR="etc/iqtree" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/iqtree DOCSDIR=/usr/local/share/doc/iqtree EXAMPLESDIR=/usr/local/share/examples/iqtree WWWDIR=/usr/local/www/iqtree ETCDIR=/usr/local/etc/iqtree --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> iqtree-2.2.2.7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [140releng-powerpc64le-quarterly-job-04] Installing pkg-1.20.9... [140releng-powerpc64le-quarterly-job-04] Extracting pkg-1.20.9: .......... done ===> iqtree-2.2.2.7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of iqtree-2.2.2.7 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.2.2.7 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.2.2.7 for building => SHA256 Checksum OK for iqtree-iqtree2-v2.2.2.7_GH0.tar.gz. => SHA256 Checksum OK for tothuhien-lsd2-26ba127_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.2.2.7 for building ===> Extracting for iqtree-2.2.2.7 => SHA256 Checksum OK for iqtree-iqtree2-v2.2.2.7_GH0.tar.gz. => SHA256 Checksum OK for tothuhien-lsd2-26ba127_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for iqtree-2.2.2.7 ===> Applying FreeBSD patches for iqtree-2.2.2.7 from /usr/ports/biology/iqtree/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> iqtree-2.2.2.7 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.1.pkg [140releng-powerpc64le-quarterly-job-04] Installing cmake-core-3.28.1... [140releng-powerpc64le-quarterly-job-04] `-- Installing expat-2.5.0... [140releng-powerpc64le-quarterly-job-04] `-- Extracting expat-2.5.0: .......... done [140releng-powerpc64le-quarterly-job-04] `-- Installing jsoncpp-1.9.5... [140releng-powerpc64le-quarterly-job-04] `-- Extracting jsoncpp-1.9.5: .......... done [140releng-powerpc64le-quarterly-job-04] `-- Installing libuv-1.47.0... [140releng-powerpc64le-quarterly-job-04] `-- Extracting libuv-1.47.0: .......... done [140releng-powerpc64le-quarterly-job-04] `-- Installing rhash-1.4.4... [140releng-powerpc64le-quarterly-job-04] | `-- Installing gettext-runtime-0.22.3... [140releng-powerpc64le-quarterly-job-04] | | `-- Installing indexinfo-0.3.1... [140releng-powerpc64le-quarterly-job-04] | | `-- Extracting indexinfo-0.3.1: .... done [140releng-powerpc64le-quarterly-job-04] | `-- Extracting gettext-runtime-0.22.3: .......... done [140releng-powerpc64le-quarterly-job-04] `-- Extracting rhash-1.4.4: .......... done [140releng-powerpc64le-quarterly-job-04] Extracting cmake-core-3.28.1: .......... done ===> iqtree-2.2.2.7 depends on file: /usr/local/bin/cmake - found ===> Returning to build of iqtree-2.2.2.7 ===> iqtree-2.2.2.7 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [140releng-powerpc64le-quarterly-job-04] Installing ninja-1.11.1,2... /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:15: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'? const vm_ufi upow2_23 = {pow2_23}; ^~~~~~ vm_udi /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here union vm_udi { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui' Vec4ui a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui' Vec4ui b = a >> 23; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f' Vec4f d = reinterpret_f(c); // bit-cast back to double ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f' Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq' Vec2uq a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq' Vec2uq b = a >> 52; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq' Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 0% 3/286] /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -MD -MT CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -MF CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o.d -o CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp FAILED: CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -MD -MT CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -MF CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o.d -o CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp c++: warning: argument unused during compilation: '-mavx' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:35: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher #error Please compile for the SSE2 instruction set or higher ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d' inline Vec2d infinite_vec() { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d' inline Vec2d infinite_vec() { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d' inline Vec2d nan_vec(int n) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d' inline Vec2d nan_vec(int n) { ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:15: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'? const vm_ufi upow2_23 = {pow2_23}; ^~~~~~ vm_udi /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here union vm_udi { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui' Vec4ui a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui' Vec4ui b = a >> 23; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f' Vec4f d = reinterpret_f(c); // bit-cast back to double ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f' Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq' Vec2uq a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq' Vec2uq b = a >> 52; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq' Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 1% 3/286] /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -msse3 -MD -MT CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -MF CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o.d -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelsse.cpp FAILED: CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -msse3 -MD -MT CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -MF CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o.d -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelsse.cpp c++: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelsse.cpp:8: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher #error Please compile for the SSE2 instruction set or higher ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelsse.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d' inline Vec2d infinite_vec() { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d' inline Vec2d infinite_vec() { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d' inline Vec2d nan_vec(int n) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d' inline Vec2d nan_vec(int n) { ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelsse.cpp:9: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:15: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'? const vm_ufi upow2_23 = {pow2_23}; ^~~~~~ vm_udi /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here union vm_udi { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui' Vec4ui a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui' Vec4ui b = a >> 23; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f' Vec4f d = reinterpret_f(c); // bit-cast back to double ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f' Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq' Vec2uq a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq' Vec2uq b = a >> 52; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq' Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/iqtree