From nobody Thu Feb 15 12:01:50 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TbDFB41nlz53Nvq for ; Thu, 15 Feb 2024 12:01:50 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TbDFB2S6cz51bF for ; Thu, 15 Feb 2024 12:01:50 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1707998510; a=rsa-sha256; cv=none; b=A9SGPDMXpijDIWJzmjKI25rlGY0+OAbiE6FiGoVE4VEjedkBOvcqD/3Y8QevEtq5w8DHTN 3Si7rRjko8ktRMs0vLjgYoZb1L3VaTkQYaYlllQEr6QzVaFXgn0DpPKOvbOjcSjC4VOG0t J95zIh6dC6C1okaxZHEYZBHzikwx/vBMOmWWnw97s1UjDIw7Ex0ramCSTKuQSs+1/M+xn9 pjvbDWl0Yuo7/vaUL+ajdga86MqGp7n+9hZzmmDzOPhLR77OdaGs9dCt46Qo1RqMLNKV4Q U+WIyJVfTJIgivuYWtuj5WHgmLFgDid63diS9XLqua+sOQ16H3fswv7rMkFjJg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1707998510; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=3KMJZHcimkEB5Ij/B8Fk+wyGo77WkQ13iLaN0XWqyfc=; b=qy/tQpJNiow4+Ei+86tGEku0zN4M8LZ8ZlDPr8ziNXg/ekXfmXPmZ6UdVQJRKBtv3lDIUE tgT2lbQ/SqDL2r8ehtJdehWL4si/2Y/7EIqVwEHzAisiE6bFrOqARhC6IuzJTyV9rSQQGf +JfvOqWSpbI6nAdaQnuPcOPhBoMV3nUItfBoUS5iev38ziAlH06yyGTpEQi3A5ZMx7E/12 2LKDQF0ZdVNBS2V9LTlzHjXvsO+DaSetjXLcAkCbkoJ5INrePmOSCVVqqSN+oi3DBjA8Fe DfveMGaa9mET1cI7nBXOnfAqgfBa7sl2O5S0j5RZ7RdQU70teB+bSwd46y8Ugg== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4TbDFB1XP1zgnp for ; Thu, 15 Feb 2024 12:01:50 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 5e3f by ampere3.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere3.nyi.freebsd.org); Thu, 15 Feb 2024 12:01:50 +0000 To: yuri@FreeBSD.org Subject: [package - 132arm64-default][biology/seqwish] Failed for seqwish-0.7.9 in build Cc: pkg-fallout@FreeBSD.org Date: Thu, 15 Feb 2024 12:01:50 +0000 Message-Id: <65cdfd2e.5e3f.527e359d@ampere3.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/132arm64-default/e9c9c73181b5/logs/seqwish-0.7.9.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=132arm64-default&build=e9c9c73181b5 Log: =>> Building biology/seqwish build started at Thu Feb 15 12:00:23 UTC 2024 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.9 building for: FreeBSD 132arm64-default-job-05 13.2-RELEASE-p9 FreeBSD 13.2-RELEASE-p9 arm64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 839 Nov 7 01:02 /usr/ports/biology/seqwish/Makefile Ports top last git commit: e9c9c73181 Ports top unclean checkout: no Port dir last git commit: 25d04c675e Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500006 Jail OSVERSION: 1302001 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p9 UNAME_r=13.2-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/132arm64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132arm64-default/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=132arm64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132arm64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.9: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install - m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [132arm64-default-job-05] Installing pkg-1.20.9_1... [132arm64-default-job-05] Extracting pkg-1.20.9_1: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building ===> Extracting for seqwish-0.7.9 => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seqwish-0.7.9 ===> Applying FreeBSD patches for seqwish-0.7.9 from /usr/ports/biology/seqwish/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [132arm64-default-job-05] Installing cmake-core-3.28.3... [132arm64-default-job-05] `-- Installing expat-2.5.0_1... [132arm64-default-job-05] `-- Extracting expat-2.5.0_1: .......... done [132arm64-default-job-05] `-- Installing jsoncpp-1.9.5... [132arm64-default-job-05] `-- Extracting jsoncpp-1.9.5: .......... done [132arm64-default-job-05] `-- Installing libuv-1.48.0... [132arm64-default-job-05] `-- Extracting libuv-1.48.0: .......... done [132arm64-default-job-05] `-- Installing rhash-1.4.4_1... [132arm64-default-job-05] | `-- Installing gettext-runtime-0.22.3_1... [132arm64-default-job-05] | | `-- Installing indexinfo-0.3.1... [132arm64-default-job-05] | | `-- Extracting indexinfo-0.3.1: .... done [132arm64-default-job-05] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [132arm64-default-job-05] `-- Extracting rhash-1.4.4_1: .......... done [132arm64-default-job-05] Extracting cmake-core-3.28.3: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== -- Performing Test HAVE_INLINE -- Performing Test HAVE_INLINE - Success -- Performing Test HAVE___INLINE -- Performing Test HAVE___INLINE - Success -- Performing Test HAVE___INLINE__ -- Performing Test HAVE___INLINE__ - Success -- Performing Test HAVE___DECLSPEC_DLLEXPORT_ -- Performing Test HAVE___DECLSPEC_DLLEXPORT_ - Failed -- Performing Test HAVE___DECLSPEC_DLLIMPORT_ -- Performing Test HAVE___DECLSPEC_DLLIMPORT_ - Failed -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int32_t -- Check size of int32_t - done -- Looking for PRId32 -- Looking for PRId32 - found -- Check size of int64_t -- Check size of int64_t - done -- Looking for PRId64 -- Looking for PRId64 - found CMake Warning (dev) at external/googletest/googletest/CMakeLists.txt:47 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: PROJECT_VERSION PROJECT_VERSION_MAJOR PROJECT_VERSION_MINOR PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:48 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:211 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): external/googletest/googletest/CMakeLists.txt:60 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (9.9s) -- Generating done (0.3s) -- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-configure --- sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build --- [ 80%] Performing build step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/bin/make [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/divsufsort.o [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/divsufsort.o [ 0%] Building CXX object external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/sssort.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/sssort.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/trsort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/trsort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/utils.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/utils.o [ 20%] Linking C static library libdivsufsort64.a [ 20%] Linking C static library libdivsufsort.a [ 20%] Built target divsufsort64 [ 20%] Built target divsufsort [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o [ 40%] Linking CXX static library libgtest.a [ 40%] Built target gtest [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite/lib/construct_lcp.cpp:6: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: warning: instantiation of variable 'sdsl::key_text_trait<'\b'>::KEY_TEXT' required here, but no definition is available [-Wundefined-var-template] const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite/lib/construct_lcp.cpp:209:25: note: in instantiation of function template specialization 'sdsl::construct_lcp_PHI<(unsigned char)'\b'>' requested here construct_lcp_PHI<8>(config); ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/config.hpp:51:24: note: forward declaration of template entity is here static const char* KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_text_trait<'\b'>::KEY_TEXT' is explicitly instantiated in another translation unit const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ [ 40%] Building CXX object external/googletest/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o [ 50%] Linking CXX static library libgtest_main.a [ 50%] Built target gtest_main [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o 1 warning generated. [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o [100%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o [100%] Linking CXX static library libsdsl.a [100%] Built target sdsl cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build --- sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-install --- [ 81%] No install step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-install --- CMakeFiles/sdsl-lite-complete --- [ 82%] Completed 'sdsl-lite' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/sdsl-lite-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-done [ 82%] Built target sdsl-lite --- CMakeFiles/seqwish.dir/all --- /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/depend --- CMakeFiles/seqwish.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/seqwish.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/build --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- --- CMakeFiles/seqwish.dir/src/tempfile.cpp.o --- --- CMakeFiles/seqwish.dir/src/main.cpp.o --- --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/utils.cpp.o --- CMakeFiles/seqwish.dir/src/tempfile.cpp.o --- [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/tempfile.cpp.o --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src 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-I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/dep--- CMakeFiles/seqwish.dir/src/main.cpp.o --- [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/main.cpp.o --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- s/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/utils.cpp.o -MF CMakeFiles/seqwish.dir/src/utils.cpp.o.d -o CMakeFiles/seqwish.dir/src/utils.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/utils.cpp --- CMakeFiles/seqwish.dir/src/tempfile.cpp.o --- s/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/tempfile.cpp.o -MF CMakeFiles/seqwish.dir/src/tempfile.cpp.o.d -o CMakeFiles/seqwish.dir/src/tempfile.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/tempfile.cpp --- CMakeFiles/seqwish.dir/src/main.cpp.o --- /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args 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CMakeFiles/seqwish.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- c++: error: the clang compiler does not support '-march=native' --- CMakeFiles/seqwish.dir/src/main.cpp.o --- c++: error: the clang compiler does not support '-march=native' *** [CMakeFiles/seqwish.dir/src/main.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build --- CMakeFiles/seqwish.dir/src/tempfile.cpp.o --- c++: error: the clang compiler does not support '-march=native' *** [CMakeFiles/seqwish.dir/src/tempfile.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- *** [CMakeFiles/seqwish.dir/src/utils.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 3 errors make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** [CMakeFiles/seqwish.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 1 error make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 1 error make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqwish