[package - 132powerpc64le-quarterly][biology/megahit] Failed for megahit-1.2.9_1 in build
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Date: Thu, 15 Feb 2024 05:06:43 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/132powerpc64le-quarterly/b3e5282399eb/logs/megahit-1.2.9_1.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=132powerpc64le-quarterly&build=b3e5282399eb
Log:
=>> Building biology/megahit
build started at Thu Feb 15 05:03:54 UTC 2024
port directory: /usr/ports/biology/megahit
package name: megahit-1.2.9_1
building for: FreeBSD 132powerpc64le-quarterly-job-02 13.2-RELEASE FreeBSD 13.2-RELEASE powerpc
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 536 Jan 6 01:03 /usr/ports/biology/megahit/Makefile
Ports top last git commit: b3e528239
Ports top unclean checkout: no
Port dir last git commit: 756e18783
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500000
Jail OSVERSION: 1302001
Job Id: 02
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jwb@FreeBSD.org
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--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/megahit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555"
BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/megahit" EXAMPLESDIR="share/examples/megahit" DATADIR="share/megahit" WWWDIR="www/megahit" ETCDIR="etc/megahit"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/megahit DOCSDIR=/usr/local/share/doc/megahit EXAMPLESDIR=/usr/local/share/examples/megahit WWWDIR=/usr/local/www/megahit ETCDIR=/usr/local/etc/megahit
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
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MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
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data seg size (kbytes, -d) 33554432
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core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
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max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[132powerpc64le-quarterly-job-02] Installing pkg-1.20.9...
[132powerpc64le-quarterly-job-02] Extracting pkg-1.20.9: .......... done
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of megahit-1.2.9_1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===> Extracting for megahit-1.2.9_1
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for megahit-1.2.9_1
===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.28.1.pkg
[132powerpc64le-quarterly-job-02] Installing cmake-core-3.28.1...
[132powerpc64le-quarterly-job-02] `-- Installing expat-2.5.0...
[132powerpc64le-quarterly-job-02] `-- Extracting expat-2.5.0: .......... done
[132powerpc64le-quarterly-job-02] `-- Installing jsoncpp-1.9.5...
[132powerpc64le-quarterly-job-02] `-- Extracting jsoncpp-1.9.5: .......... done
[132powerpc64le-quarterly-job-02] `-- Installing libuv-1.47.0...
[132powerpc64le-quarterly-job-02] `-- Extracting libuv-1.47.0: .......... done
[132powerpc64le-quarterly-job-02] `-- Installing rhash-1.4.4...
[132powerpc64le-quarterly-job-02] | `-- Installing gettext-runtime-0.22.3...
[132powerpc64le-quarterly-job-02] | | `-- Installing indexinfo-0.3.1...
[132powerpc64le-quarterly-job-02] | | `-- Extracting indexinfo-0.3.1: .... done
[132powerpc64le-quarterly-job-02] | `-- Extracting gettext-runtime-0.22.3: .......... done
[132powerpc64le-quarterly-job-02] `-- Extracting rhash-1.4.4: .......... done
[132powerpc64le-quarterly-job-02] Extracting cmake-core-3.28.1: .......... done
===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of megahit-1.2.9_1
===> megahit-1.2.9_1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,2.pkg
[132powerpc64le-quarterly-job-02] Installing ninja-1.11.1,2...
[132powerpc64le-quarterly-job-02] `-- Installing python39-3.9.18...
[132powerpc64le-quarterly-job-02] | `-- Installing libffi-3.4.4...
[132powerpc64le-quarterly-job-02] | `-- Extracting libffi-3.4.4: .......... done
[132powerpc64le-quarterly-job-02] | `-- Installing mpdecimal-2.5.1...
[132powerpc64le-quarterly-job-02] | `-- Extracting mpdecimal-2.5.1: .......... done
<snip>
Python3_EXECUTABLE
Python_ADDITIONAL_VERSIONS
Python_EXECUTABLE
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/biology/megahit/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for megahit-1.2.9_1
[ 0% 3/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_buildlib.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_buildlib.cpp:1:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/sequence_lib.h:31:
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable]
int64_t num_bases = 0;
^
1 warning generated.
[ 1% 4/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:13:
/usr/lib/clang/14.0.5/include/ia32intrin.h:200:10: error: use of undeclared identifier '__builtin_ia32_readeflags_u32'
return __builtin_ia32_readeflags_u32();
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:206:3: error: use of undeclared identifier '__builtin_ia32_writeeflags_u32'
__builtin_ia32_writeeflags_u32(__f);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:288:10: error: use of undeclared identifier '__builtin_ia32_crc32qi'
return __builtin_ia32_crc32qi(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:309:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'
return __builtin_ia32_crc32hi(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:330:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
return __builtin_ia32_crc32si(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:358:10: error: use of undeclared identifier '__builtin_ia32_rdpmc'
return __builtin_ia32_rdpmc(__A);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:364:10: error: use of undeclared identifier '__builtin_ia32_rdtscp'
return __builtin_ia32_rdtscp(__A);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:373:3: error: use of undeclared identifier '__builtin_ia32_wbinvd'
__builtin_ia32_wbinvd();
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
/usr/lib/clang/14.0.5/include/immintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:17:
In file included from /usr/lib/clang/14.0.5/include/x86gprintrin.h:25:
/usr/lib/clang/14.0.5/include/crc32intrin.h:33:10: error: use of undeclared identifier '__builtin_ia32_crc32qi'
return __builtin_ia32_crc32qi(__C, __D);
^
/usr/lib/clang/14.0.5/include/crc32intrin.h:53:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'
return __builtin_ia32_crc32hi(__C, __D);
^
/usr/lib/clang/14.0.5/include/crc32intrin.h:73:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
return __builtin_ia32_crc32si(__C, __D);
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:21:
/usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:56:
/usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:31:
/usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:31:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:43:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:36:
/usr/lib/clang/14.0.5/include/ppc_wrappers/pmmintrin.h:35:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:36:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/pmmintrin.h:44:
/usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[ 2% 4/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp:27:
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:29:16: error: couldn't allocate output register for constraint 'a'
asm volatile("cpuid\n\t"
^
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:15:16: error: couldn't allocate output register for constraint 'a'
asm volatile("cpuid\n\t"
^
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:15:16: error: couldn't allocate output register for constraint 'a'
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:29:16: error: couldn't allocate output register for constraint 'a'
asm volatile("cpuid\n\t"
^
4 errors generated.
[ 3% 4/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:38:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/async_sequence_reader.h:10:
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable]
int64_t num_bases = 0;
^
1 warning generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/megahit