From nobody Thu Feb 08 11:36:05 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TVw0k1gtqz59YCN for ; Thu, 8 Feb 2024 11:36:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TVw0j6XJ6z4rCc for ; Thu, 8 Feb 2024 11:36:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1707392165; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=k2FaJ7jfCwTa5l3n4ed/2eEPz64EB3Sx0/G0lvYa4rw=; b=xz81psy5dd4r3QcYQKxIP8xv8UQS6wINd9y1H4hL9FBSjwYubLkoBnrAQLTUR/xx6uv3aq 43lhAej8G8LIaSdtdo/85qOGN6b4SN8uncVZeIuevzYltwEkXbzvVLmYpnGLp0IELYD7KN cR39krE4V47iAkNL1wZNMUiYGN23yJXuSRH+GhdPibfRoYfSJORfcLudbEGwO/AUbvNxIj Cn1cuOofwGxp5+J0tjFdqzVWWJdMjxsktMH2NlJwjJrYy3bU9nYHpjGlnPkO7vC6Gu5JOo ebIoxll/9wlHr6I4sSjOoJkQxyZFw5Dcq7mGXH/prX0dFbhK1EveMwdVdDx+sg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1707392165; a=rsa-sha256; cv=none; b=SwCivPYS/4EOt52wWy08JDxIm1emCOLYoFED2qocRMFDWL79yO9EaEpN8e/QDCltKnh8p6 2zzi4g4IqvKymXC+seX+oBJ+sHyg0dfV/o7cPq6HUdFiPQqClvsi4lDZ4EcmfuLoIWZkjW Z3aigV2j3JTYMOzVg9ZbsIpgxDGVWNaBG7qwdtQTo7dJ0SwAe9dBHeFs4sk/4kncc7Wu+q TseKuW+5A67NLusyll+tvijvnX9abgM4DEThJGRxU1aunPHkPkrvLPDggAHhD0aRhclKKX EnxIFMEOwMEpUgZiAhJw7AdLinbVDmMfSmYCIbPwvw0YU7orqvrsvff5durJrQ== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TVw0j5dfCzp28 for ; Thu, 8 Feb 2024 11:36:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 418Ba5ID036555 for ; Thu, 8 Feb 2024 11:36:05 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 418Ba5Wh036544; Thu, 8 Feb 2024 11:36:05 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 8 Feb 2024 11:36:05 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202402081136.418Ba5Wh036544@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 132powerpc64le-quarterly][biology/megahit] Failed for megahit-1.2.9_1 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/132powerpc64le-quarterly/397cfe84d8e3/logs/megahit-1.2.9_1.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=132powerpc64le-quarterly&build=397cfe84d8e3 Log: =>> Building biology/megahit build started at Thu Feb 8 11:32:56 UTC 2024 port directory: /usr/ports/biology/megahit package name: megahit-1.2.9_1 building for: FreeBSD 132powerpc64le-quarterly-job-07 13.2-RELEASE FreeBSD 13.2-RELEASE powerpc maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 536 Jan 6 01:03 /usr/ports/biology/megahit/Makefile Ports top last git commit: 397cfe84d Ports top unclean checkout: no Port dir last git commit: 756e18783 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500000 Jail OSVERSION: 1302001 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE UNAME_r=13.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=132powerpc64le-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/megahit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/megahit" EXAMPLESDIR="share/examples/megahit" DATADIR="share/megahit" WWWDIR="www/megahit" ETCDIR="etc/megahit" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/megahit DOCSDIR=/usr/local/share/doc/megahit EXAMPLESDIR=/usr/local/share/examples/megahit WWWDIR=/usr/local/www/megahit ETCDIR=/usr/local/etc/megahit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [132powerpc64le-quarterly-job-07] Installing pkg-1.20.9... [132powerpc64le-quarterly-job-07] Extracting pkg-1.20.9: .......... done ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of megahit-1.2.9_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building ===> Extracting for megahit-1.2.9_1 => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for megahit-1.2.9_1 ===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.1.pkg [132powerpc64le-quarterly-job-07] Installing cmake-core-3.28.1... [132powerpc64le-quarterly-job-07] `-- Installing expat-2.5.0... [132powerpc64le-quarterly-job-07] `-- Extracting expat-2.5.0: .......... done [132powerpc64le-quarterly-job-07] `-- Installing jsoncpp-1.9.5... [132powerpc64le-quarterly-job-07] `-- Extracting jsoncpp-1.9.5: .......... done [132powerpc64le-quarterly-job-07] `-- Installing libuv-1.47.0... [132powerpc64le-quarterly-job-07] `-- Extracting libuv-1.47.0: .......... done [132powerpc64le-quarterly-job-07] `-- Installing rhash-1.4.4... [132powerpc64le-quarterly-job-07] | `-- Installing gettext-runtime-0.22.3... [132powerpc64le-quarterly-job-07] | | `-- Installing indexinfo-0.3.1... [132powerpc64le-quarterly-job-07] | | `-- Extracting indexinfo-0.3.1: .... done [132powerpc64le-quarterly-job-07] | `-- Extracting gettext-runtime-0.22.3: .......... done [132powerpc64le-quarterly-job-07] `-- Extracting rhash-1.4.4: .......... done [132powerpc64le-quarterly-job-07] Extracting cmake-core-3.28.1: .......... done ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of megahit-1.2.9_1 ===> megahit-1.2.9_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [132powerpc64le-quarterly-job-07] Installing ninja-1.11.1,2... [132powerpc64le-quarterly-job-07] `-- Installing python39-3.9.18... [132powerpc64le-quarterly-job-07] | `-- Installing libffi-3.4.4... [132powerpc64le-quarterly-job-07] | `-- Extracting libffi-3.4.4: .......... done [132powerpc64le-quarterly-job-07] | `-- Installing mpdecimal-2.5.1... [132powerpc64le-quarterly-job-07] | `-- Extracting mpdecimal-2.5.1: .......... done Python3_EXECUTABLE Python_ADDITIONAL_VERSIONS Python_EXECUTABLE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/megahit/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for megahit-1.2.9_1 [ 0% 3/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_buildlib.cpp c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument] c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_buildlib.cpp:1: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] int64_t num_bases = 0; ^ 1 warning generated. [ 1% 4/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp FAILED: CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument] c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:13: /usr/lib/clang/14.0.5/include/ia32intrin.h:200:10: error: use of undeclared identifier '__builtin_ia32_readeflags_u32' return __builtin_ia32_readeflags_u32(); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:206:3: error: use of undeclared identifier '__builtin_ia32_writeeflags_u32' __builtin_ia32_writeeflags_u32(__f); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:288:10: error: use of undeclared identifier '__builtin_ia32_crc32qi' return __builtin_ia32_crc32qi(__C, __D); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:309:10: error: use of undeclared identifier '__builtin_ia32_crc32hi' return __builtin_ia32_crc32hi(__C, __D); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:330:10: error: use of undeclared identifier '__builtin_ia32_crc32si' return __builtin_ia32_crc32si(__C, __D); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:358:10: error: use of undeclared identifier '__builtin_ia32_rdpmc' return __builtin_ia32_rdpmc(__A); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:364:10: error: use of undeclared identifier '__builtin_ia32_rdtscp' return __builtin_ia32_rdtscp(__A); ^ /usr/lib/clang/14.0.5/include/ia32intrin.h:373:3: error: use of undeclared identifier '__builtin_ia32_wbinvd' __builtin_ia32_wbinvd(); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: /usr/lib/clang/14.0.5/include/immintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture" #error "This header is only meant to be used on x86 and x64 architecture" ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:17: In file included from /usr/lib/clang/14.0.5/include/x86gprintrin.h:25: /usr/lib/clang/14.0.5/include/crc32intrin.h:33:10: error: use of undeclared identifier '__builtin_ia32_crc32qi' return __builtin_ia32_crc32qi(__C, __D); ^ /usr/lib/clang/14.0.5/include/crc32intrin.h:53:10: error: use of undeclared identifier '__builtin_ia32_crc32hi' return __builtin_ia32_crc32hi(__C, __D); ^ /usr/lib/clang/14.0.5/include/crc32intrin.h:73:10: error: use of undeclared identifier '__builtin_ia32_crc32si' return __builtin_ia32_crc32si(__C, __D); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:21: /usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." #error \ ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26: /usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." #error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26: In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:56: /usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." #error \ ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:31: /usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." #error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:31: In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:43: /usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." #error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:36: /usr/lib/clang/14.0.5/include/ppc_wrappers/pmmintrin.h:35:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning." #error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning." ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11: In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15: In file included from /usr/lib/clang/14.0.5/include/immintrin.h:36: In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/pmmintrin.h:44: /usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." #error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error." ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 2% 4/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp FAILED: CMakeFiles/megahit_core.dir/src/main.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument] c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp:27: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:29:16: error: couldn't allocate output register for constraint 'a' asm volatile("cpuid\n\t" ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:15:16: error: couldn't allocate output register for constraint 'a' asm volatile("cpuid\n\t" ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:15:16: error: couldn't allocate output register for constraint 'a' /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:29:16: error: couldn't allocate output register for constraint 'a' asm volatile("cpuid\n\t" ^ 4 errors generated. [ 3% 4/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument] c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:38: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] int64_t num_bases = 0; ^ 1 warning generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/megahit