From nobody Wed Feb 07 04:20:35 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TV6Nh3svqz58hQt for ; Wed, 7 Feb 2024 04:20:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TV6Nh0gRWz4TMQ for ; Wed, 7 Feb 2024 04:20:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1707279636; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=T9dyVsUC7psJ3NIS84Hh7o3jkOpN8+1PG3zcCMuG4c4=; b=tASSGgjEy1A8I8Pznh3MRR2DB03xJBfIDo9g0Qoj61Ru/1KfJ+ge7kHsf2Hi0HnLNY3d6n CqEnNreakhTGL/tX4uLdfZ/wKbay5XkoLtxmvMS+g9OtDlqqCyzl29LyGEItm3LbbOGoBP C6Rp5Tw9PU7J6P44mgDShhYPtotRZX8KwBnJeQyfSdBRkBQuqj0mIOGGUBbQY9TiW9ievN moOQsTflHsgk27oRDA8+xXDfN+1OJezc05t+hnEDcgRFujnllwiva/8Oty8//hWYqTRJHK TY5qp2lrHA5cu8Gfw3mtZZnNj7WJoUgr4Vj9K7KzIa+vNyCdwyFGG4wfadcGQA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1707279636; a=rsa-sha256; cv=none; b=JB8BlRWTwRAXp2CS+oqqzf3FokrIbPKRmbjN+Mz+SIfOtLQhMvgHg4MTkmulwOcSatOjhU W/0BjbmUaSGPSFwbdHgmr3dumpPwP4ehQu6L35M4kwKNBRLT0QjNBC6fu4+Lg8QFPmGg1e WmJN/Ov0RoQ6wYYV7NXHui77FAOSe0mFeAMp13ykYbQLa6VMI+6gNEi2JBSfKAt8aOCn14 lS9a3a1oC3aaFfDoMwPfZrWZq/8rqaMTcdf5dfaH3hMuugF0dURZ96DyNbJC4Hz3PrmbNy AIHLScpeY6EYXIkFOr0O86KGK2DtrEuqfq96//yMAG1eHn8NoLKLg2i72wjT5A== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TV6Ng6q7JzsMc for ; Wed, 7 Feb 2024 04:20:35 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 4174KZ2E035967 for ; Wed, 7 Feb 2024 04:20:35 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 4174KZTY035947; Wed, 7 Feb 2024 04:20:35 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Wed, 7 Feb 2024 04:20:35 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202402070420.4174KZTY035947@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-powerpc64le-default][biology/iqtree] Failed for iqtree-2.2.2.7 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pe72d10c28234_s4347ef6050/logs/iqtree-2.2.2.7.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pe72d10c28234_s4347ef6050 Log: =>> Building biology/iqtree build started at Wed Feb 7 04:19:19 UTC 2024 port directory: /usr/ports/biology/iqtree package name: iqtree-2.2.2.7 building for: FreeBSD main-powerpc64le-default-job-21 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc maintained by: jrm@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1183 Sep 17 01:03 /usr/ports/biology/iqtree/Makefile Ports top last git commit: e72d10c282 Ports top unclean checkout: no Port dir last git commit: 8a1ec0de6b Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500000 Jail OSVERSION: 1500008 Job Id: 21 !!! Jail is newer than host. (Jail: 1500008, Host: 1500000) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500008 UNAME_v=FreeBSD 15.0-CURRENT 1500008 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/21/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-powerpc64le-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for iqtree-2.2.2.7: EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jrm@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/iqtree/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTAL L_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/iqtree" EXAMPLESDIR="share/examples/iqtree" DATADIR="share/iqtree" WWWDIR="www/iqtree" ETCDIR="etc/iqtree" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/iqtree DOCSDIR=/usr/local/share/doc/iqtree EXAMPLESDIR=/usr/local/share/examples/iqtree WWWDIR=/usr/local/www/iqtree ETCDIR=/usr/local/etc/iqtree --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> iqtree-2.2.2.7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-powerpc64le-default-job-21] Installing pkg-1.20.9_1... [main-powerpc64le-default-job-21] Extracting pkg-1.20.9_1: .......... done ===> iqtree-2.2.2.7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of iqtree-2.2.2.7 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.2.2.7 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.2.2.7 for building => SHA256 Checksum OK for iqtree-iqtree2-v2.2.2.7_GH0.tar.gz. => SHA256 Checksum OK for tothuhien-lsd2-26ba127_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.2.2.7 for building ===> Extracting for iqtree-2.2.2.7 => SHA256 Checksum OK for iqtree-iqtree2-v2.2.2.7_GH0.tar.gz. => SHA256 Checksum OK for tothuhien-lsd2-26ba127_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for iqtree-2.2.2.7 ===> Applying FreeBSD patches for iqtree-2.2.2.7 from /usr/ports/biology/iqtree/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> iqtree-2.2.2.7 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.1.pkg [main-powerpc64le-default-job-21] Installing cmake-core-3.28.1... [main-powerpc64le-default-job-21] `-- Installing expat-2.5.0_1... [main-powerpc64le-default-job-21] `-- Extracting expat-2.5.0_1: .......... done [main-powerpc64le-default-job-21] `-- Installing jsoncpp-1.9.5... [main-powerpc64le-default-job-21] `-- Extracting jsoncpp-1.9.5: .......... done [main-powerpc64le-default-job-21] `-- Installing libuv-1.47.0... [main-powerpc64le-default-job-21] `-- Extracting libuv-1.47.0: .......... done [main-powerpc64le-default-job-21] `-- Installing rhash-1.4.4_1... [main-powerpc64le-default-job-21] | `-- Installing gettext-runtime-0.22.3_1... | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d' 65 | inline Vec2d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:70:8: error: unknown type name 'Vec4f' 70 | inline Vec4f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:70:27: error: use of undeclared identifier 'Vec4f' 70 | inline Vec4f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:77:8: error: unknown type name 'Vec4d' 77 | inline Vec4d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:77:27: error: use of undeclared identifier 'Vec4d' 77 | inline Vec4d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:82:8: error: unknown type name 'Vec8f' 82 | inline Vec8f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:82:27: error: use of undeclared identifier 'Vec8f' 82 | inline Vec8f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d' 108 | inline Vec2d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d' 108 | inline Vec2d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:113:8: error: unknown type name 'Vec4f' 113 | inline Vec4f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:113:22: error: use of undeclared identifier 'Vec4f' 113 | inline Vec4f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:120:8: error: unknown type name 'Vec4d' 120 | inline Vec4d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:120:22: error: use of undeclared identifier 'Vec4d' 120 | inline Vec4d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:125:8: error: unknown type name 'Vec8f' 125 | inline Vec8f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:125:22: error: use of undeclared identifier 'Vec8f' 125 | inline Vec8f nan_vec(int n) { | ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelsse.cpp:9: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:51:15: error: unknown type name 'Vec2d' 51 | static inline Vec2d vm_pow2n (Vec2d const & n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:51:31: error: unknown type name 'Vec2d' 51 | static inline Vec2d vm_pow2n (Vec2d const & n) { | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 0% 3/286] /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -MD -MT CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -MF CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o.d -o CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp FAILED: CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -MD -MT CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -MF CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o.d -o CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp c++: warning: argument unused during compilation: '-mavx' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:35: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher 38 | #error Please compile for the SSE2 instruction set or higher | ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d' 65 | inline Vec2d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d' 65 | inline Vec2d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:70:8: error: unknown type name 'Vec4f' 70 | inline Vec4f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:70:27: error: use of undeclared identifier 'Vec4f' 70 | inline Vec4f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:77:8: error: unknown type name 'Vec4d' 77 | inline Vec4d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:77:27: error: use of undeclared identifier 'Vec4d' 77 | inline Vec4d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:82:8: error: unknown type name 'Vec8f' 82 | inline Vec8f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:82:27: error: use of undeclared identifier 'Vec8f' 82 | inline Vec8f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d' 108 | inline Vec2d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d' 108 | inline Vec2d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:113:8: error: unknown type name 'Vec4f' 113 | inline Vec4f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:113:22: error: use of undeclared identifier 'Vec4f' 113 | inline Vec4f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:120:8: error: unknown type name 'Vec4d' 120 | inline Vec4d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:120:22: error: use of undeclared identifier 'Vec4d' 120 | inline Vec4d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:125:8: error: unknown type name 'Vec8f' 125 | inline Vec8f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:125:22: error: use of undeclared identifier 'Vec8f' 125 | inline Vec8f nan_vec(int n) { | ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:51:15: error: unknown type name 'Vec2d' 51 | static inline Vec2d vm_pow2n (Vec2d const & n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:51:31: error: unknown type name 'Vec2d' 51 | static inline Vec2d vm_pow2n (Vec2d const & n) { | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 1% 3/286] /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -mfma -MD -MT CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -MF CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o.d -o CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp FAILED: CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -mfma -MD -MT CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -MF CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o.d -o CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp c++: warning: argument unused during compilation: '-mavx' [-Wunused-command-line-argument] c++: warning: argument unused during compilation: '-mfma' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp:9: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher 38 | #error Please compile for the SSE2 instruction set or higher | ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp:10: In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d' 65 | inline Vec2d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d' 65 | inline Vec2d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:70:8: error: unknown type name 'Vec4f' 70 | inline Vec4f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:70:27: error: use of undeclared identifier 'Vec4f' 70 | inline Vec4f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:77:8: error: unknown type name 'Vec4d' 77 | inline Vec4d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:77:27: error: use of undeclared identifier 'Vec4d' 77 | inline Vec4d infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:82:8: error: unknown type name 'Vec8f' 82 | inline Vec8f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:82:27: error: use of undeclared identifier 'Vec8f' 82 | inline Vec8f infinite_vec() { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d' 108 | inline Vec2d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d' 108 | inline Vec2d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:113:8: error: unknown type name 'Vec4f' 113 | inline Vec4f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:113:22: error: use of undeclared identifier 'Vec4f' 113 | inline Vec4f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:120:8: error: unknown type name 'Vec4d' 120 | inline Vec4d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:120:22: error: use of undeclared identifier 'Vec4d' 120 | inline Vec4d nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:125:8: error: unknown type name 'Vec8f' 125 | inline Vec8f nan_vec(int n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:125:22: error: use of undeclared identifier 'Vec8f' 125 | inline Vec8f nan_vec(int n) { | ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp:10: /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:51:15: error: unknown type name 'Vec2d' 51 | static inline Vec2d vm_pow2n (Vec2d const & n) { | ^ /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:51:31: error: unknown type name 'Vec2d' 51 | static inline Vec2d vm_pow2n (Vec2d const & n) { | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/iqtree