[package - main-powerpc64le-default][biology/ngs-sdk] Failed for ngs-sdk-3.0.1 in build
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Date: Tue, 06 Feb 2024 05:52:18 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pe72d10c28234_s4347ef6050/logs/ngs-sdk-3.0.1.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pe72d10c28234_s4347ef6050 Log: =>> Building biology/ngs-sdk build started at Tue Feb 6 05:51:39 UTC 2024 port directory: /usr/ports/biology/ngs-sdk package name: ngs-sdk-3.0.1 building for: FreeBSD main-powerpc64le-default-job-11 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1625 Jun 27 2023 /usr/ports/biology/ngs-sdk/Makefile Ports top last git commit: e72d10c282 Ports top unclean checkout: no Port dir last git commit: 3b489c6e56 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500000 Jail OSVERSION: 1500008 Job Id: 11 !!! Jail is newer than host. (Jail: 1500008, Host: 1500000) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500008 UNAME_v=FreeBSD 15.0-CURRENT 1500008 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-powerpc64le-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="instal l -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-powerpc64le-default-job-11] Installing pkg-1.20.9_1... [main-powerpc64le-default-job-11] Extracting pkg-1.20.9_1: .......... done ===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ngs-sdk-3.0.1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building => SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building ===> Extracting for ngs-sdk-3.0.1 => SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ngs-sdk-3.0.1 ===> Applying FreeBSD patches for ngs-sdk-3.0.1 from /usr/ports/biology/ngs-sdk/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ngs-sdk-3.0.1 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_3.pkg [main-powerpc64le-default-job-11] Installing gmake-4.3_3... [main-powerpc64le-default-job-11] `-- Installing gettext-runtime-0.22.3_1... [main-powerpc64le-default-job-11] | `-- Installing indexinfo-0.3.1... [main-powerpc64le-default-job-11] | `-- Extracting indexinfo-0.3.1: .... done [main-powerpc64le-default-job-11] `-- Extracting gettext-runtime-0.22.3_1: .......... done [main-powerpc64le-default-job-11] Extracting gmake-4.3_3: .......... done ===> ngs-sdk-3.0.1 depends on package: gmake>=4.3 - found ===> Returning to build of ngs-sdk-3.0.1 ===> ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - not found ===> Installing existing package /packages/All/perl5-5.36.3_1.pkg [main-powerpc64le-default-job-11] Installing perl5-5.36.3_1... [main-powerpc64le-default-job-11] Extracting perl5-5.36.3_1: .......... done ===> ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - found ===> Returning to build of ngs-sdk-3.0.1 =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for ngs-sdk-3.0.1 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... FreeBSD checking machine architecture... powerpc configure: error: unsupported architecture 'FreeBSD':'powerpc' CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... FreeBSD checking machine architecture... powerpc configure: error: unsupported architecture 'FreeBSD':'powerpc' CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... FreeBSD checking machine architecture... powerpc configure: error: unsupported architecture 'FreeBSD':'powerpc' =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ngs-sdk-3.0.1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' *** File 'Makefile.config.FreeBSD.powerpc' is missing. Please run ./configure gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.powerpc] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' gmake[1]: *** [Makefile:54: ngs-sdk] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/ngs-sdk