From nobody Mon Feb 05 03:40:48 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TSsbj0CSkz590V4 for ; Mon, 5 Feb 2024 03:40:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TSsbh3w2Qz41Qy for ; Mon, 5 Feb 2024 03:40:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1707104448; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=qmW8PFtYKKpiMomeuUOC107NWJRc+ceL5GTMHSg0dAE=; b=nXw+WzdGusn55f14xBEfV1Ja3gbMd9LUA33Qny3auH8NtKnIZeV7xhxE6WMciq41ONz0dD y1QL3DfE0ULkV2D4w38VjH8MGZKIMABEFCEH2FAUam4TAEAq0mN+y9BnhC4ZMHuImHa60h O2P/N1Zfl6rEhPmFfYISN50JMhGApxoXulVExwCXBlv65dXswZa0JtYW8OMWZAbCHRk/A6 OsxRznajDHxWprNsXr6wQCCbDxRD4IUqHv4WSHeeezshoYyfhUkHE6MEjtbolwn8cXU2R6 +xw5xVlhz4QkiLTO4YBQsMXYVMMhRO0rm4WfT9Sx3SG+RHIjHqIa5bV6om5I7A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1707104448; a=rsa-sha256; cv=none; b=ivvB1LNDwhSoTEn56VHsYEt0CfGzjnn1sbhb5fRBu0jQQKnaXt6iJQK0GHWQQL+pMSY0/P 3Mm0Rp1Pvpn0QmyyCeZ7X3/CybQoaXbfOrQhjb3ylG/kBo2vZO4lDHuOrA2Xl0/UgkYD99 PWf+hHq7Low38DRREE3D6oz4/0SPbCZsqSSwGFCVkTudOdm7k765brL9zlRtOgovoUnoy0 A29Zv0/I0OJC6/WUu0MNbCPbjzQmsa8v8WnuSADNGl1OqZbF8+xxYLsYfSpXYJXF+Wwszu nlJQ8sQEGG3bSmnK5kkE4X2hPF1lodARtF6grMTdRhjG1awstk5J1rUo3nzihg== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TSsbh2rfyzPMH for ; Mon, 5 Feb 2024 03:40:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 4153emNw039326 for ; Mon, 5 Feb 2024 03:40:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 4153em3V039319; Mon, 5 Feb 2024 03:40:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 5 Feb 2024 03:40:48 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202402050340.4153em3V039319@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-powerpc64le-default][biology/jalview] Failed for jalview-2.11.2.5 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pe72d10c28234_s4347ef6050/logs/jalview-2.11.2.5.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pe72d10c28234_s4347ef6050 Log: =>> Building biology/jalview build started at Mon Feb 5 03:35:42 UTC 2024 port directory: /usr/ports/biology/jalview package name: jalview-2.11.2.5 building for: FreeBSD main-powerpc64le-default-job-13 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2018 Jun 27 2023 /usr/ports/biology/jalview/Makefile Ports top last git commit: e72d10c282 Ports top unclean checkout: no Port dir last git commit: 4301fdb656 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500000 Jail OSVERSION: 1500008 Job Id: 13 !!! Jail is newer than host. (Jail: 1500008, Host: 1500000) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500008 UNAME_v=FreeBSD 15.0-CURRENT 1500008 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-powerpc64le-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/jalview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/jalview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTAL L_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/jalview" EXAMPLESDIR="share/examples/jalview" DATADIR="share/java/jalview" WWWDIR="www/jalview" ETCDIR="etc/jalview" --End PLIST_SUB-- --SUB_LIST-- JAVA=/usr/local/openjdk11/bin/java JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/java/jalview DOCSDIR=/usr/local/share/doc/jalview EXAMPLESDIR=/usr/local/share/examples/jalview WWWDIR=/usr/local/www/jalview ETCDIR=/usr/local/etc/jalview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> jalview-2.11.2.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-powerpc64le-default-job-13] Installing pkg-1.20.9_1... [main-powerpc64le-default-job-13] Extracting pkg-1.20.9_1: .......... done ===> jalview-2.11.2.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of jalview-2.11.2.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.2.5 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.2.5 for building => SHA256 Checksum OK for jalview_2_11_2_5.tar.gz. => SHA256 Checksum OK for jalview-2.11.2.5-deps.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.2.5 for building ===> Extracting for jalview-2.11.2.5 => SHA256 Checksum OK for jalview_2_11_2_5.tar.gz. => SHA256 Checksum OK for jalview-2.11.2.5-deps.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for jalview-2.11.2.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> jalview-2.11.2.5 depends on executable: gradle761 - not found ===> Installing existing package /packages/All/gradle761-7.6.1.pkg [main-powerpc64le-default-job-13] Installing gradle761-7.6.1... [main-powerpc64le-default-job-13] `-- Installing openjdk8-8.392.08.1_1... [main-powerpc64le-default-job-13] | `-- Installing alsa-lib-1.2.10... [main-powerpc64le-default-job-13] | `-- Extracting alsa-lib-1.2.10: .......... done [main-powerpc64le-default-job-13] | `-- Installing dejavu-2.37_3... [main-powerpc64le-default-job-13] | | `-- Installing fontconfig-2.15.0_2,1... [main-powerpc64le-default-job-13] | | `-- Installing expat-2.5.0_1... [main-powerpc64le-default-job-13] | | `-- Extracting expat-2.5.0_1: .......... done [main-powerpc64le-default-job-13] | | `-- Installing freetype2-2.13.2... [main-powerpc64le-default-job-13] | | | `-- Installing brotli-1.1.0,1... [main-powerpc64le-default-job-13] | | | `-- Extracting brotli-1.1.0,1: .......... done [main-powerpc64le-default-job-13] | | | `-- Installing png-1.6.40... [main-powerpc64le-default-job-13] | | | `-- Extracting png-1.6.40: .......... done (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from libinotify-20211018_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.392.08.1_1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> jalview-2.11.2.5 depends on executable: gradle761 - found ===> Returning to build of jalview-2.11.2.5 ===> jalview-2.11.2.5 depends on file: /usr/local/openjdk11/bin/java - not found ===> Installing existing package /packages/All/openjdk11-11.0.21+9.1.pkg [main-powerpc64le-default-job-13] Installing openjdk11-11.0.21+9.1... [main-powerpc64le-default-job-13] `-- Installing jpeg-turbo-3.0.1_1... [main-powerpc64le-default-job-13] `-- Extracting jpeg-turbo-3.0.1_1: .......... done [main-powerpc64le-default-job-13] `-- Installing lcms2-2.16_1... [main-powerpc64le-default-job-13] | `-- Installing tiff-4.4.0_3... [main-powerpc64le-default-job-13] | | `-- Installing jbigkit-2.1_2... [main-powerpc64le-default-job-13] | | `-- Extracting jbigkit-2.1_2: .......... done [main-powerpc64le-default-job-13] | | `-- Installing libdeflate-1.19... [main-powerpc64le-default-job-13] | | `-- Extracting libdeflate-1.19: .......... done [main-powerpc64le-default-job-13] | | `-- Installing zstd-1.5.5_1... [main-powerpc64le-default-job-13] | | `-- Installing liblz4-1.9.4_1,1... [main-powerpc64le-default-job-13] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [main-powerpc64le-default-job-13] | | `-- Extracting zstd-1.5.5_1: .......... done [main-powerpc64le-default-job-13] | `-- Extracting tiff-4.4.0_3: .......... done [main-powerpc64le-default-job-13] `-- Extracting lcms2-2.16_1: .......... done [main-powerpc64le-default-job-13] `-- Installing libXrandr-1.5.2_1... [main-powerpc64le-default-job-13] `-- Extracting libXrandr-1.5.2_1: .......... done [main-powerpc64le-default-job-13] `-- Installing xorg-fonts-truetype-7.7_1... [main-powerpc64le-default-job-13] | `-- Installing encodings-1.0.5,1... [main-powerpc64le-default-job-13] | `-- Extracting encodings-1.0.5,1: .......... done [main-powerpc64le-default-job-13] | `-- Installing font-bh-ttf-1.0.3_5... [main-powerpc64le-default-job-13] | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [main-powerpc64le-default-job-13] | `-- Installing font-misc-ethiopic-1.0.4... [main-powerpc64le-default-job-13] | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [main-powerpc64le-default-job-13] | `-- Installing font-misc-meltho-1.0.3_5... [main-powerpc64le-default-job-13] | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [main-powerpc64le-default-job-13] `-- Extracting xorg-fonts-truetype-7.7_1: ... done [main-powerpc64le-default-job-13] Extracting openjdk11-11.0.21+9.1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from openjdk11-11.0.21+9.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> jalview-2.11.2.5 depends on file: /usr/local/openjdk11/bin/java - found ===> Returning to build of jalview-2.11.2.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for jalview-2.11.2.5 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for jalview-2.11.2.5 Welcome to Gradle 7.6.1! Here are the highlights of this release: - Added support for Java 19. - Introduced `--rerun` flag for individual task rerun. - Improved dependency block for test suites to be strongly typed. - Added a pluggable system for Java toolchains provisioning. For more details see https://docs.gradle.org/7.6.1/release-notes.html Starting a Gradle Daemon (subsequent builds will be faster) > Configure project : Using properties from file './utils/channels/default/channel_gradle.properties' JALVIEW_VERSION is set to '2.11.2.5' HEADLESS BUILD J2S ENABLED Not in a git repository. Using git values from RELEASE properties file. Using a LOCAL profile. > Task :copyHelp > Task :buildIndices > Task :copyResources > Task :copyChannelResources > Task :createBuildProperties Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6.1/userguide/validation_problems.html#implicit_dependency for more details about this problem. > Task :buildResources > Task :copyDocs > Task :convertMdFiles Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/README-DMG_creation.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/README-DMG_background_image_creation.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/building.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/releaseprocess.html > Task :releasesTemplates Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6.1/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6.1/userguide/validation_problems.html#implicit_dependency for more details about this problem. > Task :prepare > Task :compileJava Setting target compatibility to 11 Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. The message received from the daemon indicates that the daemon has disappeared. Build request sent: Build{id=fcd8c456-c436-42bb-8891-efa910c4c46e, currentDir=/wrkdirs/usr/ports/biology/jalview/work/jalview} Attempting to read last messages from the daemon log... Daemon pid: 13187 log file: /wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/7.6.1/daemon-13187.out.log ----- Last 20 lines from daemon log file - daemon-13187.out.log ----- Using properties from file './utils/channels/default/channel_gradle.properties' JALVIEW_VERSION is set to '2.11.2.5' HEADLESS BUILD J2S ENABLED Not in a git repository. Using git values from RELEASE properties file. Using a LOCAL profile. Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6.1/userguide/validation_problems.html#implicit_dependency for more details about this problem. Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/README-DMG_creation.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/README-DMG_background_image_creation.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/building.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/releaseprocess.html Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6.1/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6.1/userguide/validation_problems.html#implicit_dependency for more details about this problem. Setting target compatibility to 11 Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. ----- End of the daemon log ----- JVM crash log found: file:///wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/7.6.1/hs_err_pid13187.log FAILURE: Build failed with an exception. * What went wrong: Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed) * Try: > Run with --stacktrace option to get the stack trace. > Run with --info or --debug option to get more log output. > Run with --scan to get full insights. * Get more help at https://help.gradle.org *** Error code 1 Stop. make: stopped in /usr/ports/biology/jalview