[package - 140amd64-default][science/py-meshio] Failed for py39-meshio-5.3.5 in build
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Date: Sun, 04 Feb 2024 21:55:14 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: thierry@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy12/data/140amd64-default/3f853a69d83c/logs/py39-meshio-5.3.5.log Build URL: https://pkg-status.freebsd.org/beefy12/build.html?mastername=140amd64-default&build=3f853a69d83c Log: =>> Building science/py-meshio build started at Sun Feb 4 21:55:07 UTC 2024 port directory: /usr/ports/science/py-meshio package name: py39-meshio-5.3.5 building for: FreeBSD 140amd64-default-job-06 14.0-RELEASE-p4 FreeBSD 14.0-RELEASE-p4 amd64 maintained by: thierry@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 665 Feb 3 01:01 /usr/ports/science/py-meshio/Makefile Ports top last git commit: 3f853a69d8 Ports top unclean checkout: no Port dir last git commit: a2b33f94ae Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500006 Jail OSVERSION: 1400097 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p4 UNAME_r=14.0-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/140amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140amd64-default/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- thierry@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-meshio/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-meshio/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-meshio/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-meshio/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 5 55" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VER=5.3.5 PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/meshio" EXAMPLESDIR="share/examples/meshio" DATADIR="share/meshio" WWWDIR="www/meshio" ETCDIR="etc/meshio" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/meshio DOCSDIR=/usr/local/share/doc/meshio EXAMPLESDIR=/usr/local/share/examples/meshio WWWDIR=/usr/local/www/meshio ETCDIR=/usr/local/etc/meshio --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-meshio-5.3.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [140amd64-default-job-06] Installing pkg-1.20.9_1... [140amd64-default-job-06] Extracting pkg-1.20.9_1: .......... done ===> py39-meshio-5.3.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-meshio-5.3.5 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user => meshio-5.3.5.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/m/meshio/meshio-5.3.5.tar.gz meshio-5.3.5.tar.gz 479 kB 50 MBps 00s ===> Fetching all distfiles required by py39-meshio-5.3.5 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-meshio-5.3.5 for building => SHA256 Checksum OK for meshio-5.3.5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-meshio-5.3.5 for building ===> Extracting for py39-meshio-5.3.5 => SHA256 Checksum OK for meshio-5.3.5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-meshio-5.3.5 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-meshio-5.3.5 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [140amd64-default-job-06] Installing py39-numpy-1.25.0_6,1... [140amd64-default-job-06] `-- Installing gcc12-12.2.0_8... [140amd64-default-job-06] | `-- Installing binutils-2.40_5,1... [140amd64-default-job-06] | | `-- Installing gettext-runtime-0.22.3_1... [140amd64-default-job-06] | | `-- Installing indexinfo-0.3.1... [140amd64-default-job-06] | | `-- Extracting indexinfo-0.3.1: .... done [140amd64-default-job-06] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [140amd64-default-job-06] | | `-- Installing zstd-1.5.5_1... [140amd64-default-job-06] | | `-- Installing liblz4-1.9.4_1,1... [140amd64-default-job-06] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [140amd64-default-job-06] | | `-- Extracting zstd-1.5.5_1: .......... done [140amd64-default-job-06] | `-- Extracting binutils-2.40_5,1: .......... done [140amd64-default-job-06] | `-- Installing gmp-6.3.0... [140amd64-default-job-06] | `-- Extracting gmp-6.3.0: .......... done [140amd64-default-job-06] | `-- Installing mpc-1.3.1_1... [140amd64-default-job-06] | | `-- Installing mpfr-4.2.1,1... [140amd64-default-job-06] | | `-- Extracting mpfr-4.2.1,1: .......... done [140amd64-default-job-06] | `-- Extracting mpc-1.3.1_1: ......... done [140amd64-default-job-06] `-- Extracting gcc12-12.2.0_8: .......... done [140amd64-default-job-06] `-- Installing openblas-0.3.25,2... [140amd64-default-job-06] `-- Extracting openblas-0.3.25,2: .......... done [140amd64-default-job-06] `-- Installing py39-setuptools-63.1.0_1... [140amd64-default-job-06] | `-- Installing python39-3.9.18_1... [140amd64-default-job-06] | | `-- Installing libffi-3.4.4_1... [140amd64-default-job-06] | | `-- Extracting libffi-3.4.4_1: .......... done [140amd64-default-job-06] | | `-- Installing mpdecimal-2.5.1... [140amd64-default-job-06] | | `-- Extracting mpdecimal-2.5.1: .......... done [140amd64-default-job-06] | | `-- Installing readline-8.2.7_1... [140amd64-default-job-06] | | `-- Extracting readline-8.2.7_1: .......... done [140amd64-default-job-06] | `-- Extracting python39-3.9.18_1: .......... done [140amd64-default-job-06] `-- Extracting py39-setuptools-63.1.0_1: .......... done [140amd64-default-job-06] `-- Installing suitesparse-umfpack-6.3.2... [140amd64-default-job-06] | `-- Installing suitesparse-amd-3.3.1... [140amd64-default-job-06] | | `-- Installing suitesparse-config-7.6.0... [140amd64-default-job-06] | | `-- Extracting suitesparse-config-7.6.0: .......... done [140amd64-default-job-06] | `-- Extracting suitesparse-amd-3.3.1: .......... done [140amd64-default-job-06] | `-- Installing suitesparse-camd-3.3.1... [140amd64-default-job-06] | `-- Extracting suitesparse-camd-3.3.1: .......... done [140amd64-default-job-06] | `-- Installing suitesparse-ccolamd-3.3.2... [140amd64-default-job-06] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [140amd64-default-job-06] | `-- Installing suitesparse-cholmod-5.2.0... [140amd64-default-job-06] | | `-- Installing suitesparse-colamd-3.3.2... [140amd64-default-job-06] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [140amd64-default-job-06] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [140amd64-default-job-06] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [140amd64-default-job-06] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc12-12.2.0_8: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-meshio-5.3.5 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-meshio-5.3.5 ===> py39-meshio-5.3.5 depends on package: py39-h5py>0 - not found ===> Installing existing package /packages/All/py39-h5py-3.10.0.pkg [140amd64-default-job-06] Installing py39-h5py-3.10.0... [140amd64-default-job-06] `-- Installing hdf5-1.12.2_2,1... [140amd64-default-job-06] | `-- Installing libaec-1.1.2... [140amd64-default-job-06] | `-- Extracting libaec-1.1.2: .......... done [140amd64-default-job-06] `-- Extracting hdf5-1.12.2_2,1: .......... done [140amd64-default-job-06] Extracting py39-h5py-3.10.0: .......... done ===> py39-meshio-5.3.5 depends on package: py39-h5py>0 - found ===> Returning to build of py39-meshio-5.3.5 ===> py39-meshio-5.3.5 depends on file: /usr/local/bin/python3.9 - found ===> py39-meshio-5.3.5 depends on package: py39-build>=0 - not found ===> Installing existing package /packages/All/py39-build-0.10.0_2.pkg [140amd64-default-job-06] Installing py39-build-0.10.0_2... [140amd64-default-job-06] `-- Installing py39-packaging-23.2... [140amd64-default-job-06] `-- Extracting py39-packaging-23.2: .......... done [140amd64-default-job-06] `-- Installing py39-pyproject_hooks-1.0.0_2... [140amd64-default-job-06] | `-- Installing py39-tomli-2.0.1_2... [140amd64-default-job-06] | `-- Extracting py39-tomli-2.0.1_2: .......... done [140amd64-default-job-06] `-- Extracting py39-pyproject_hooks-1.0.0_2: .......... done [140amd64-default-job-06] Extracting py39-build-0.10.0_2: .......... done ===> py39-meshio-5.3.5 depends on package: py39-build>=0 - found ===> Returning to build of py39-meshio-5.3.5 ===> py39-meshio-5.3.5 depends on package: py39-installer>=0 - not found ===> Installing existing package /packages/All/py39-installer-0.7.0.pkg [140amd64-default-job-06] Installing py39-installer-0.7.0... [140amd64-default-job-06] Extracting py39-installer-0.7.0: .......... done ===> py39-meshio-5.3.5 depends on package: py39-installer>=0 - found ===> Returning to build of py39-meshio-5.3.5 =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-meshio-5.3.5 =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-meshio-5.3.5 * Getting build dependencies for wheel... running egg_info writing src/meshio.egg-info/PKG-INFO writing dependency_links to src/meshio.egg-info/dependency_links.txt writing entry points to src/meshio.egg-info/entry_points.txt writing requirements to src/meshio.egg-info/requires.txt writing top-level names to src/meshio.egg-info/top_level.txt reading manifest file 'src/meshio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'src/meshio.egg-info/SOURCES.txt' ERROR Missing dependencies: wheel *** Error code 1 Stop. make: stopped in /usr/ports/science/py-meshio