[package - 132releng-armv7-quarterly][devel/R-cran-rJava] Failed for R-cran-rJava-1.0.10 in stage

From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 03 Feb 2024 06:13:10 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     thierry@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/132releng-armv7-quarterly/68593b1d8800/logs/R-cran-rJava-1.0.10.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=132releng-armv7-quarterly&build=68593b1d8800
Log:

=>> Building devel/R-cran-rJava
build started at Sat Feb  3 06:12:17 UTC 2024
port directory: /usr/ports/devel/R-cran-rJava
package name: R-cran-rJava-1.0.10
building for: FreeBSD 132releng-armv7-quarterly-job-12 13.2-RELEASE-p6 FreeBSD 13.2-RELEASE-p6 1302001 arm
maintained by: thierry@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root  wheel  925 Jan 16 01:02 /usr/ports/devel/R-cran-rJava/Makefile
Ports top last git commit: 68593b1d8
Ports top unclean checkout: no
Port dir last git commit: 72cbe1a32
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500006
Jail OSVERSION: 1302001
Job Id: 12

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---End OPTIONS List---

--MAINTAINER--
thierry@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran12" F90="gfortran12" FC="gfortran12"	 FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.cache  HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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va/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=""-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server " -Wl,-rpath=/usr/local/lib/gcc12  -L/usr/local/lib/gcc12 -fstack-protector-strong " LIBS=""  CXX="c++" CX
XFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
JAVASHAREDIR="share/java"  JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/rJava OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/rJava"  EXAMPLESDIR="share/examples/rJava"  DATADIR="share/rJava"  WWWDIR="www/rJava"  ETCDIR="etc/rJava"
--End PLIST_SUB--

--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"  JAVAJARDIR="/usr/local/share/java/classes"  JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/rJava DOCSDIR=/usr/local/share/doc/rJava EXAMPLESDIR=/usr/local/share/examples/rJava  WWWDIR=/usr/local/www/rJava ETCDIR=/usr/local/etc/rJava
--End SUB_LIST--

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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
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####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
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locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
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--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.9.pkg
[132releng-armv7-quarterly-job-12] Installing pkg-1.20.9...
[132releng-armv7-quarterly-job-12] Extracting pkg-1.20.9: .......... done
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-rJava-1.0.10
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by R-cran-rJava-1.0.10 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by R-cran-rJava-1.0.10 for building
=> SHA256 Checksum OK for rJava_1.0-10.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by R-cran-rJava-1.0.10 for building
===>  Extracting for R-cran-rJava-1.0.10
=> SHA256 Checksum OK for rJava_1.0-10.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for R-cran-rJava-1.0.10
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/openjdk8/bin/java - not found
===>   Installing existing package /packages/All/openjdk8-8.392.08.1_1.pkg
[132releng-armv7-quarterly-job-12] Installing openjdk8-8.392.08.1_1...
[132releng-armv7-quarterly-job-12] `-- Installing alsa-lib-1.2.10...
[132releng-armv7-quarterly-job-12] `-- Extracting alsa-lib-1.2.10: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing dejavu-2.37_3...
[132releng-armv7-quarterly-job-12] |   `-- Installing fontconfig-2.14.2,1...
[132releng-armv7-quarterly-job-12] |   | `-- Installing expat-2.5.0...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting expat-2.5.0: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing freetype2-2.13.2...
[132releng-armv7-quarterly-job-12] |   |   `-- Installing brotli-1.1.0,1...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting brotli-1.1.0,1: .......... done
[132releng-armv7-quarterly-job-12] |   |   `-- Installing png-1.6.40...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting png-1.6.40: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Extracting freetype2-2.13.2: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting fontconfig-2.14.2,1: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing mkfontscale-1.2.1...
[132releng-armv7-quarterly-job-12] |   | `-- Installing libfontenc-1.1.7...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting libfontenc-1.1.7: ......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting mkfontscale-1.2.1: ....... done
[132releng-armv7-quarterly-job-12] `-- Extracting dejavu-2.37_3: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing giflib-5.2.1...
[132releng-armv7-quarterly-job-12] `-- Extracting giflib-5.2.1: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing java-zoneinfo-2021.e...
[132releng-armv7-quarterly-job-12] `-- Extracting java-zoneinfo-2021.e: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing javavmwrapper-2.7.9...
[132releng-armv7-quarterly-job-12] `-- Extracting javavmwrapper-2.7.9: .......... done
<snip>
[132releng-armv7-quarterly-job-12] |   `-- Installing openjpeg-2.5.0_1...
[132releng-armv7-quarterly-job-12] |   `-- Extracting openjpeg-2.5.0_1: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing poppler-data-0.4.12...
[132releng-armv7-quarterly-job-12] |   `-- Extracting poppler-data-0.4.12: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing urw-base35-fonts-20200910...
[132releng-armv7-quarterly-job-12] |   `-- Extracting urw-base35-fonts-20200910: .......... done
[132releng-armv7-quarterly-job-12] `-- Extracting ghostscript10-10.02.1_1: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing gmake-4.3_2...
[132releng-armv7-quarterly-job-12] `-- Extracting gmake-4.3_2: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing harfbuzz-8.3.0...
[132releng-armv7-quarterly-job-12] |   `-- Installing graphite2-1.3.14...
[132releng-armv7-quarterly-job-12] |   `-- Extracting graphite2-1.3.14: .......... done
[132releng-armv7-quarterly-job-12] `-- Extracting harfbuzz-8.3.0: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing icu-74.2,1...
[132releng-armv7-quarterly-job-12] `-- Extracting icu-74.2,1: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing libXScrnSaver-1.2.4...
[132releng-armv7-quarterly-job-12] `-- Extracting libXScrnSaver-1.2.4: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing libXmu-1.1.4,1...
[132releng-armv7-quarterly-job-12] `-- Extracting libXmu-1.1.4,1: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing pango-1.50.14...
[132releng-armv7-quarterly-job-12] |   `-- Installing encodings-1.0.5,1...
[132releng-armv7-quarterly-job-12] |   `-- Extracting encodings-1.0.5,1: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing fribidi-1.0.13...
[132releng-armv7-quarterly-job-12] |   `-- Extracting fribidi-1.0.13: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing libXft-2.3.7...
[132releng-armv7-quarterly-job-12] |   `-- Extracting libXft-2.3.7: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing libthai-0.1.29...
[132releng-armv7-quarterly-job-12] |   | `-- Installing libdatrie-0.2.13_1...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting libdatrie-0.2.13_1: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting libthai-0.1.29: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing xorg-fonts-truetype-7.7_1...
[132releng-armv7-quarterly-job-12] |   | `-- Installing font-bh-ttf-1.0.3_5...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting font-bh-ttf-1.0.3_5: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing font-misc-ethiopic-1.0.4...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting font-misc-ethiopic-1.0.4: ...... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing font-misc-meltho-1.0.3_5...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting font-misc-meltho-1.0.3_5: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting xorg-fonts-truetype-7.7_1: ... done
[132releng-armv7-quarterly-job-12] `-- Extracting pango-1.50.14: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing tcl86-8.6.13...
[132releng-armv7-quarterly-job-12] `-- Extracting tcl86-8.6.13: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing tk86-8.6.13...
[132releng-armv7-quarterly-job-12] `-- Extracting tk86-8.6.13: .......... done
[132releng-armv7-quarterly-job-12] Extracting R-4.3.2_1: .......... done
==> Running trigger: fontconfig.ucl
Running fc-cache to build fontconfig cache...
==> Running trigger: gio-modules.ucl
Generating GIO modules cache
==> Running trigger: glib-schemas.ucl
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from python39-3.9.18:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
=====
Message from gcc12-12.2.0_7:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from ghostscript10-10.02.1_1:

--
This package installs a script named dvipdf that depends on dvips.  If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from libthai-0.1.29:

--
===>   NOTICE:

The libthai port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/bin/R - found
===>   Returning to build of R-cran-rJava-1.0.10
===>   R-cran-rJava-1.0.10 depends on executable: gfortran12 - found
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   R-cran-rJava-1.0.10 depends on shared library: libicuuc.so - found (/usr/local/lib/libicuuc.so)
===>   R-cran-rJava-1.0.10 depends on shared library: libpcre2-8.so - found (/usr/local/lib/libpcre2-8.so)
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for R-cran-rJava-1.0.10
/usr/local/bin/R CMD javareconf -e exit
Java interpreter : /usr/local/bin/java
Java version     : 1.8.0_392
Java home path   : /usr/local/openjdk8/jre
Java compiler    : /usr/local/bin/javac
Java headers gen.: /usr/local/bin/javah
Java archive tool: /usr/local/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/freebsd
detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm -lpthread
using C compiler: 'FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)'
gmake[1]: Entering directory '/tmp/Rjavareconf.L0pTDE'
cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd  -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include    -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -c conftest.c -o conftest.o
cc -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -L/usr/local/lib -fstack-protector-strong -o conftest.so conftest.o -L/usr/local/openjdk8/jre/lib/arm/server -ljvm -lpthread -L/usr/local/lib/R/lib -lR
gmake[1]: Leaving directory '/tmp/Rjavareconf.L0pTDE'

The following Java variables have been exported:
JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH
Running: exit
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===========================================================================
=======================<phase: run-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/openjdk8/bin/java - found
===>   R-cran-rJava-1.0.10 depends on file: /usr/local/bin/R - found
===>   R-cran-rJava-1.0.10 depends on executable: gfortran12 - found
===========================================================================
=======================<phase: stage          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Staging for R-cran-rJava-1.0.10
===>   Generating temporary packing list
* installing *source* package 'rJava' ...
** package 'rJava' successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether cc supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/local/openjdk8/bin/java'
archiver    : '/usr/local/openjdk8/bin/jar'
compiler    : '/usr/local/openjdk8/bin/javac'
header prep.: '/usr/local/openjdk8/bin/javah'
cpp flags   : '-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd'
java libs   : '-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server -L/usr/local/openjdk8/jre/lib/armv7/server -ljvm -lpthread'
checking whether Java run-time works... yes
checking whether -Xrs is supported... yes
checking whether -Xrs will be used... yes
checking whether JVM will be loaded dynamically... no
checking whether JNI programs can be compiled... configure: error: Cannot compile a simple JNI program. See config.log for details.

Make sure you have Java Development Kit installed and correctly registered in R.
If in doubt, re-run "R CMD javareconf" as root.

ERROR: configuration failed for package 'rJava'
* removing '/wrkdirs/usr/ports/devel/R-cran-rJava/work/stage/usr/local/lib/R/library/rJava'
*** Error code 1

Stop.
make: stopped in /usr/ports/devel/R-cran-rJava