[package - 132powerpc64le-quarterly][biology/infernal] Failed for infernal-1.1.4 in configure
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Date: Thu, 01 Feb 2024 02:47:54 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: mzaki@e-mail.ne.jp
Log URL: https://pkg-status.freebsd.org/foul2/data/132powerpc64le-quarterly/68593b1d8800/logs/infernal-1.1.4.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=132powerpc64le-quarterly&build=68593b1d8800
Log:
=>> Building biology/infernal
build started at Thu Feb 1 02:46:49 UTC 2024
port directory: /usr/ports/biology/infernal
package name: infernal-1.1.4
building for: FreeBSD 132powerpc64le-quarterly-job-19 13.2-RELEASE FreeBSD 13.2-RELEASE powerpc
maintained by: mzaki@e-mail.ne.jp
Makefile datestamp: -rw-r--r-- 1 root wheel 1645 Jan 6 01:03 /usr/ports/biology/infernal/Makefile
Ports top last git commit: 68593b1d8
Ports top unclean checkout: no
Port dir last git commit: 756e18783
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500000
Jail OSVERSION: 1302001
Job Id: 19
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1302001
UNAME_v=FreeBSD 13.2-RELEASE
UNAME_r=13.2-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1
MASTERMNT=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/19/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=132powerpc64le-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for infernal-1.1.4:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
TEST=off: Build and/or run tests
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
mzaki@e-mail.ne.jp
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/infernal/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/infernal/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/infernal/work/.cache HOME=/wrkdirs/usr/ports/biology/infernal/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/infernal/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/infernal/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/infernal/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/infernal/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/infernal/work/.cache HOME=/wrkdirs/usr/ports/biology/infernal/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/infernal/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/infernal/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m
555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/infernal" EXAMPLESDIR="share/examples/infernal" DATADIR="share/infernal" WWWDIR="www/infernal" ETCDIR="etc/infernal"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/infernal DOCSDIR=/usr/local/share/doc/infernal EXAMPLESDIR=/usr/local/share/examples/infernal WWWDIR=/usr/local/www/infernal ETCDIR=/usr/local/etc/infernal
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> infernal-1.1.4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[132powerpc64le-quarterly-job-19] Installing pkg-1.20.9...
[132powerpc64le-quarterly-job-19] Extracting pkg-1.20.9: .......... done
===> infernal-1.1.4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of infernal-1.1.4
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by infernal-1.1.4 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by infernal-1.1.4 for building
=> SHA256 Checksum OK for infernal-1.1.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by infernal-1.1.4 for building
===> Extracting for infernal-1.1.4
=> SHA256 Checksum OK for infernal-1.1.4.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for infernal-1.1.4
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> infernal-1.1.4 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[132powerpc64le-quarterly-job-19] Installing gmake-4.3_2...
[132powerpc64le-quarterly-job-19] `-- Installing gettext-runtime-0.22.3...
[132powerpc64le-quarterly-job-19] | `-- Installing indexinfo-0.3.1...
[132powerpc64le-quarterly-job-19] | `-- Extracting indexinfo-0.3.1: .... done
[132powerpc64le-quarterly-job-19] `-- Extracting gettext-runtime-0.22.3: .......... done
[132powerpc64le-quarterly-job-19] Extracting gmake-4.3_2: .......... done
===> infernal-1.1.4 depends on package: gmake>=4.3 - found
===> Returning to build of infernal-1.1.4
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for infernal-1.1.4
configure: loading site script /usr/ports/Templates/config.site
configure: Configuring Infernal for your system.
checking build system type... powerpc64le-portbld-freebsd13.2
checking host system type... powerpc64le-portbld-freebsd13.2
checking whether to compile using MPI... no
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for cc option to accept ISO C99... none needed
checking for cc option to accept ISO Standard C... (cached) none needed
checking how to run the C preprocessor... cpp
checking for a BSD-compatible install... /usr/bin/install -c
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether ln -s works... yes
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking whether cc is Clang... yes
checking whether Clang needs flag to prevent "argument unused" warning when linking with -pthread... no
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking whether cc can compile our Altivec/VMX code... yes
checking whether cc can compile our SSE code... no
configure: Activating Altivec/VMX vector DP implementation
checking compiler support --start-group... yes
checking for gzip... /usr/bin/gzip
checking for python3... no
checking for library containing clock_gettime... none required
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for netinet/in.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for sys/sysctl.h... (cached) yes
checking altivec.h usability... yes
checking altivec.h presence... yes
checking for altivec.h... yes
checking for uint8_t... (cached) yes
checking for uint16_t... (cached) yes
checking for uint32_t... (cached) yes
checking for uint64_t... (cached) yes
checking for off_t... (cached) yes
checking whether byte ordering is bigendian... no
configure: ::::::::::--- no vector instruction set ---::::::::::
configure: Infernal Altivec/VMX only supports bigendian platforms: e.g. ppc64 not ppc64le
configure: error: No supported vectorization found for your machine.
===> Script "configure" failed unexpectedly.
Please report the problem to mzaki@e-mail.ne.jp [maintainer] and attach the
"/wrkdirs/usr/ports/biology/infernal/work/infernal-1.1.4/config.log" including
the output of the failure of your make command. Also, it might be a good idea
to provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/infernal