[package - main-powerpc-default][biology/ngs-sdk] Failed for ngs-sdk-3.0.1 in build
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Date: Thu, 01 Feb 2024 00:01:42 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul1/data/main-powerpc-default/pa8c72eab473a_s67082f077f/logs/ngs-sdk-3.0.1.log
Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=main-powerpc-default&build=pa8c72eab473a_s67082f077f
Log:
=>> Building biology/ngs-sdk
build started at Thu Feb 1 00:01:09 UTC 2024
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-3.0.1
building for: FreeBSD main-powerpc-default-job-05 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1625 Jul 11 2023 /usr/ports/biology/ngs-sdk/Makefile
Ports top last git commit: a8c72eab47
Ports top unclean checkout: no
Port dir last git commit: 3b489c6e56
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.0
Host OSVERSION: 1500003
Jail OSVERSION: 1500008
Job Id: 05
!!! Jail is newer than host. (Jail: 1500008, Host: 1500003) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1500008
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=powerpc
UNAME_p=powerpc
UNAME_r=15.0-CURRENT
LOCALBASE=/usr/local
UNAME_v=FreeBSD 15.0-CURRENT 1500008
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.0
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-powerpc-default/05/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-powerpc-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-powerpc-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.0
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build"
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555"
BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=powerpc
MACHINE_ARCH=powerpc
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[main-powerpc-default-job-05] Installing pkg-1.20.9...
[main-powerpc-default-job-05] Extracting pkg-1.20.9: .......... done
===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ngs-sdk-3.0.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-3.0.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-3.0.1 for building
=> SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-3.0.1 for building
===> Extracting for ngs-sdk-3.0.1
=> SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ngs-sdk-3.0.1
===> Applying FreeBSD patches for ngs-sdk-3.0.1 from /usr/ports/biology/ngs-sdk/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ngs-sdk-3.0.1 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[main-powerpc-default-job-05] Installing gmake-4.3_2...
[main-powerpc-default-job-05] `-- Installing gettext-runtime-0.22.3...
[main-powerpc-default-job-05] | `-- Installing indexinfo-0.3.1...
[main-powerpc-default-job-05] | `-- Extracting indexinfo-0.3.1: .... done
[main-powerpc-default-job-05] `-- Extracting gettext-runtime-0.22.3: .......... done
[main-powerpc-default-job-05] Extracting gmake-4.3_2: .......... done
===> ngs-sdk-3.0.1 depends on package: gmake>=4.3 - found
===> Returning to build of ngs-sdk-3.0.1
===> ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - not found
===> Installing existing package /packages/All/perl5-5.36.3_1.pkg
[main-powerpc-default-job-05] Installing perl5-5.36.3_1...
[main-powerpc-default-job-05] Extracting perl5-5.36.3_1: .......... done
===> ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - found
===> Returning to build of ngs-sdk-3.0.1
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for ngs-sdk-3.0.1
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... powerpc
configure: error: unsupported architecture 'FreeBSD':'powerpc'
CONFIGURING ngs-java
Configuring NGS-JAVA package
checking system type... FreeBSD
checking machine architecture... powerpc
configure: error: unsupported architecture 'FreeBSD':'powerpc'
CONFIGURING ngs-python
Configuring NGS-PYTHON package
checking system type... FreeBSD
checking machine architecture... powerpc
configure: error: unsupported architecture 'FreeBSD':'powerpc'
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for ngs-sdk-3.0.1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1'
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk'
*** File 'Makefile.config.FreeBSD.powerpc' is missing. Please run ./configure
gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.powerpc] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk'
gmake[1]: *** [Makefile:54: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ngs-sdk