[package - 140releng-armv7-quarterly][biology/wfa2-lib] Failed for wfa2-lib-2.3.5 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Sun, 25 Aug 2024 18:33:38 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/140releng-armv7-quarterly/8103237c5a27/logs/wfa2-lib-2.3.5.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=140releng-armv7-quarterly&build=8103237c5a27
Log:
=>> Building biology/wfa2-lib
build started at Sun Aug 25 18:33:19 UTC 2024
port directory: /usr/ports/biology/wfa2-lib
package name: wfa2-lib-2.3.5
building for: FreeBSD 140releng-armv7-quarterly-job-02 14.0-RELEASE-p9 FreeBSD 14.0-RELEASE-p9 1400097 arm
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 396 Jul 16 01:02 /usr/ports/biology/wfa2-lib/Makefile
Ports top last git commit: 8103237c5
Ports top unclean checkout: no
Port dir last git commit: e0c9a053f
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500019
Jail OSVERSION: 1400097
Job Id: 02
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400097
UNAME_v=FreeBSD 14.0-RELEASE-p9 1400097
UNAME_r=14.0-RELEASE-p9
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-30-g79e3edcd
MASTERMNT=/usr/local/poudriere/data/.m/140releng-armv7-quarterly/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=tmux-256color
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/140releng-armv7-quarterly/02/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=140releng-armv7-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/140releng-armv7-quarterly/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work/.cache HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wfa2-lib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work/.cache HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wfa2-lib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install
-s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/wfa2-lib" EXAMPLESDIR="share/examples/wfa2-lib" DATADIR="share/wfa2-lib" WWWDIR="www/wfa2-lib" ETCDIR="etc/wfa2-lib"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/wfa2-lib DOCSDIR=/usr/local/share/doc/wfa2-lib EXAMPLESDIR=/usr/local/share/examples/wfa2-lib WWWDIR=/usr/local/www/wfa2-lib ETCDIR=/usr/local/etc/wfa2-lib
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> wfa2-lib-2.3.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[140releng-armv7-quarterly-job-02] Installing pkg-1.21.3...
[140releng-armv7-quarterly-job-02] Extracting pkg-1.21.3: .......... done
===> wfa2-lib-2.3.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of wfa2-lib-2.3.5
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by wfa2-lib-2.3.5 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by wfa2-lib-2.3.5 for building
=> SHA256 Checksum OK for smarco-WFA2-lib-v2.3.5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by wfa2-lib-2.3.5 for building
===> Extracting for wfa2-lib-2.3.5
=> SHA256 Checksum OK for smarco-WFA2-lib-v2.3.5_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for wfa2-lib-2.3.5
===> Applying FreeBSD patches for wfa2-lib-2.3.5 from /usr/ports/biology/wfa2-lib/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> wfa2-lib-2.3.5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.29.6.pkg
[140releng-armv7-quarterly-job-02] Installing cmake-core-3.29.6...
[140releng-armv7-quarterly-job-02] `-- Installing expat-2.6.2...
[140releng-armv7-quarterly-job-02] `-- Extracting expat-2.6.2: .......... done
[140releng-armv7-quarterly-job-02] `-- Installing jsoncpp-1.9.5...
[140releng-armv7-quarterly-job-02] `-- Extracting jsoncpp-1.9.5: .......... done
[140releng-armv7-quarterly-job-02] `-- Installing libuv-1.48.0...
[140releng-armv7-quarterly-job-02] `-- Extracting libuv-1.48.0: .......... done
[140releng-armv7-quarterly-job-02] `-- Installing rhash-1.4.4_1...
[140releng-armv7-quarterly-job-02] | `-- Installing gettext-runtime-0.22.5...
[140releng-armv7-quarterly-job-02] | | `-- Installing indexinfo-0.3.1...
[140releng-armv7-quarterly-job-02] | | `-- Extracting indexinfo-0.3.1: .... done
[140releng-armv7-quarterly-job-02] | `-- Extracting gettext-runtime-0.22.5: .......... done
[140releng-armv7-quarterly-job-02] `-- Extracting rhash-1.4.4_1: .......... done
[140releng-armv7-quarterly-job-02] Extracting cmake-core-3.29.6: .......... done
===> wfa2-lib-2.3.5 depends on file: /usr/local/bin/cmake - found
===> Returning to build of wfa2-lib-2.3.5
===> wfa2-lib-2.3.5 depends on executable: ninja - not found
<snip>
CONVERT_B_TO_MB(read_global_pos*sizeof(bt_block_t)),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
#define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
^~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace_buffer.c:515:9: warning: format specifies type 'unsigned long' but the argument has type 'unsigned int' [-Wformat]
CONVERT_B_TO_MB(write_global_pos*sizeof(bt_block_t)),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
#define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
^~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
[ 38% 50/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace_offload.c
[ 39% 51/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialigner.c
[ 40% 52/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace.c
[ 41% 53/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront.c
[ 41% 54/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:676:23: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,&breakpoint,0);
^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:676:7: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,&breakpoint,0);
^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:25: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,
^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:9: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,
^~~~~~~~~~~~~~~
4 warnings generated.
[ 42% 55/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_components.c
[ 43% 56/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine2p.c
[ 44% 57/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine.c
[ 45% 58/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute.c
[ 45% 59/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_debug.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_debug.c:170:32: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used));
~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
%llu
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
#define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
^~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
[ 46% 60/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_linear.c
[ 47% 61/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_edit.c
[ 48% 62/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend.c
[ 49% 63/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_display.c
[ 50% 64/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:176:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
int wf_compute_distance_end2end(
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:193:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
int wf_compute_distance_end2end_weighted(
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:212:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
int wf_compute_distance_endsfree(
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
void wavefront_heuristic_wfadaptive(
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:297:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
void wf_heuristic_compute_sw_scores(
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:329:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
void wavefront_heuristic_xdrop(
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:400:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
bool wavefront_heuristic_zdrop(
^
8 warnings generated.
[ 50% 65/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_pcigar.c
[ 51% 66/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_penalties.c
[ 52% 67/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_plot.c
[ 53% 68/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_slab.c
[ 54% 69/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_sequences.c
[ 54% 70/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels_avx.c
[ 55% 71/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_termination.c
[ 56% 72/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c:321:7: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
CONVERT_B_TO_MB(slab_size),
^~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
#define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
^~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c:322:7: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
CONVERT_B_TO_MB(bt_buffer_used),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
#define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
^~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
[ 57% 73/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels.c
[ 58% 74/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_stack.c.o -MF CMakeFiles/wfa2.dir/system/mm_stack.c.o.d -o CMakeFiles/wfa2.dir/system/mm_stack.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_stack.c
[ 58% 75/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_allocator.c.o -MF CMakeFiles/wfa2.dir/system/mm_allocator.c.o.d -o CMakeFiles/wfa2.dir/system/mm_allocator.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_allocator.c
[ 59% 76/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_timer.c.o -MF CMakeFiles/wfa2.dir/system/profiler_timer.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_timer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_timer.c
[ 60% 77/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_counter.c.o -MF CMakeFiles/wfa2.dir/system/profiler_counter.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_counter.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_counter.c
[ 61% 78/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/bitmap.c.o -MF CMakeFiles/wfa2.dir/utils/bitmap.c.o.d -o CMakeFiles/wfa2.dir/utils/bitmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/bitmap.c
[ 62% 79/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/dna_text.c.o -MF CMakeFiles/wfa2.dir/utils/dna_text.c.o.d -o CMakeFiles/wfa2.dir/utils/dna_text.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/dna_text.c
[ 62% 80/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -MF CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o.d -o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/sequence_buffer.c
[ 63% 81/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/commons.c.o -MF CMakeFiles/wfa2.dir/utils/commons.c.o.d -o CMakeFiles/wfa2.dir/utils/commons.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/commons.c
[ 64% 82/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/vector.c.o -MF CMakeFiles/wfa2.dir/utils/vector.c.o.d -o CMakeFiles/wfa2.dir/utils/vector.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/vector.c
[ 65% 83/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine2p_penalties.c
[ 66% 84/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine_penalties.c
[ 66% 85/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/heatmap.c.o -MF CMakeFiles/wfa2.dir/utils/heatmap.c.o.d -o CMakeFiles/wfa2.dir/utils/heatmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/heatmap.c
[ 67% 86/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -MF CMakeFiles/wfa2.dir/alignment/score_matrix.c.o.d -o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/score_matrix.c
[ 68% 87/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/cigar.c.o -MF CMakeFiles/wfa2.dir/alignment/cigar.c.o.d -o CMakeFiles/wfa2.dir/alignment/cigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:50:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
['M'] = SAM_CIGAR_MATCH,
^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:38:26: note: expanded from macro 'SAM_CIGAR_MATCH'
#define SAM_CIGAR_MATCH 0
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
[0 ... 255] = SAM_CIGAR_NA,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
#define SAM_CIGAR_NA 15
^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:51:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
['I'] = SAM_CIGAR_INS,
^~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:39:26: note: expanded from macro 'SAM_CIGAR_INS'
#define SAM_CIGAR_INS 1
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
[0 ... 255] = SAM_CIGAR_NA,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
#define SAM_CIGAR_NA 15
^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:52:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
['D'] = SAM_CIGAR_DEL,
^~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:40:26: note: expanded from macro 'SAM_CIGAR_DEL'
#define SAM_CIGAR_DEL 2
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
[0 ... 255] = SAM_CIGAR_NA,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
#define SAM_CIGAR_NA 15
^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:53:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
['N'] = SAM_CIGAR_N_SKIP,
^~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:41:26: note: expanded from macro 'SAM_CIGAR_N_SKIP'
#define SAM_CIGAR_N_SKIP 3
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
[0 ... 255] = SAM_CIGAR_NA,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
#define SAM_CIGAR_NA 15
^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:54:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
['='] = SAM_CIGAR_EQ,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:42:26: note: expanded from macro 'SAM_CIGAR_EQ'
#define SAM_CIGAR_EQ 7
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
[0 ... 255] = SAM_CIGAR_NA,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
#define SAM_CIGAR_NA 15
^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:55:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
['X'] = SAM_CIGAR_X,
^~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:43:26: note: expanded from macro 'SAM_CIGAR_X'
#define SAM_CIGAR_X 8
^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
[0 ... 255] = SAM_CIGAR_NA,
^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
#define SAM_CIGAR_NA 15
^~
6 warnings generated.
[ 69% 88/124] : && /usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libwfa2.so.0 -o libwfa2.so.0 CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o CMakeFiles/wfa2.di
r/wavefront/wavefront_compute_edit.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o CMakeFiles/wfa2.dir/system/mm_stack.c.o CMakeFiles/wfa2.dir/system/mm_allocator.c.o CMakeFiles/wfa2.dir/system/profiler_counter.c.o CMakeFiles/wfa2.dir/system/profiler_timer.c.o CMakeFiles/wfa2.di
r/utils/bitmap.c.o CMakeFiles/wfa2.dir/utils/dna_text.c.o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o CMakeFiles/wfa2.dir/utils/vector.c.o CMakeFiles/wfa2.dir/utils/commons.c.o CMakeFiles/wfa2.dir/utils/heatmap.c.o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o CMakeFiles/wfa2.dir/alignment/cigar.c.o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o && :
[ 70% 89/124] /usr/local/bin/cmake -E cmake_symlink_library libwfa2.so.0 libwfa2.so.0 libwfa2.so && :
[ 70% 90/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark_params.c
[ 71% 91/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c
FAILED: CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c:32:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
[ 72% 91/124] /usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/bindings/cpp/WFAligner.cpp
[ 73% 91/124] /usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2cpp_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/bindings/cpp/WFAligner.cpp
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/wfa2-lib