[package - 132releng-armv7-quarterly][archivers/py-bitshuffle] Failed for py39-bitshuffle-0.5.1 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 20 Apr 2024 01:04:19 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/132releng-armv7-quarterly/1b931669de11/logs/py39-bitshuffle-0.5.1.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=132releng-armv7-quarterly&build=1b931669de11
Log:

=>> Building archivers/py-bitshuffle
build started at Sat Apr 20 01:03:49 UTC 2024
port directory: /usr/ports/archivers/py-bitshuffle
package name: py39-bitshuffle-0.5.1
building for: FreeBSD 132releng-armv7-quarterly-job-12 13.2-RELEASE-p6 FreeBSD 13.2-RELEASE-p6 1302001 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root  wheel  1013 Apr 14 01:02 /usr/ports/archivers/py-bitshuffle/Makefile
Ports top last git commit: 1b931669d
Ports top unclean checkout: no
Port dir last git commit: 1b931669d
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500006
Jail OSVERSION: 1302001
Job Id: 12

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sunpoet@FreeBSD.org
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--End PLIST_SUB--

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####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-bitshuffle-0.5.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.1.pkg
[132releng-armv7-quarterly-job-12] Installing pkg-1.21.1...
[132releng-armv7-quarterly-job-12] Extracting pkg-1.21.1: .......... done
===>   py39-bitshuffle-0.5.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-bitshuffle-0.5.1
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-bitshuffle-0.5.1 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-bitshuffle-0.5.1 for building
=> SHA256 Checksum OK for bitshuffle-0.5.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-bitshuffle-0.5.1 for building
===>  Extracting for py39-bitshuffle-0.5.1
=> SHA256 Checksum OK for bitshuffle-0.5.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-bitshuffle-0.5.1
===>  Applying FreeBSD patches for py39-bitshuffle-0.5.1 from /usr/ports/archivers/py-bitshuffle/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-bitshuffle-0.5.1 depends on package: py39-h5py>=2.4.0 - not found
===>   Installing existing package /packages/All/py39-h5py-3.10.0_1.pkg
[132releng-armv7-quarterly-job-12] Installing py39-h5py-3.10.0_1...
[132releng-armv7-quarterly-job-12] `-- Installing hdf5-1.12.2_2,1...
[132releng-armv7-quarterly-job-12] |   `-- Installing gcc13-13.2.0_4...
[132releng-armv7-quarterly-job-12] |   | `-- Installing binutils-2.40_5,1...
[132releng-armv7-quarterly-job-12] |   |   `-- Installing gettext-runtime-0.22.5...
[132releng-armv7-quarterly-job-12] |   |   | `-- Installing indexinfo-0.3.1...
[132releng-armv7-quarterly-job-12] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting gettext-runtime-0.22.5: .......... done
[132releng-armv7-quarterly-job-12] |   |   `-- Installing zstd-1.5.6...
[132releng-armv7-quarterly-job-12] |   |   | `-- Installing liblz4-1.9.4_1,1...
[132releng-armv7-quarterly-job-12] |   |   | `-- Extracting liblz4-1.9.4_1,1: .......... done
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting zstd-1.5.6: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Extracting binutils-2.40_5,1: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing gmp-6.3.0...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting gmp-6.3.0: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing mpc-1.3.1_1...
[132releng-armv7-quarterly-job-12] |   |   `-- Installing mpfr-4.2.1,1...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting mpfr-4.2.1,1: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Extracting mpc-1.3.1_1: ......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting gcc13-13.2.0_4: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing libaec-1.1.3...
[132releng-armv7-quarterly-job-12] |   `-- Extracting libaec-1.1.3: .......... done
[132releng-armv7-quarterly-job-12] `-- Extracting hdf5-1.12.2_2,1: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing py39-numpy-1.25.0_6,1...
[132releng-armv7-quarterly-job-12] |   `-- Installing openblas-0.3.25,2...
[132releng-armv7-quarterly-job-12] |   `-- Extracting openblas-0.3.25,2: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing py39-setuptools-63.1.0_1...
[132releng-armv7-quarterly-job-12] |   | `-- Installing python39-3.9.18_2...
[132releng-armv7-quarterly-job-12] |   |   `-- Installing libffi-3.4.4_1...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting libffi-3.4.4_1: .......... done
[132releng-armv7-quarterly-job-12] |   |   `-- Installing mpdecimal-4.0.0...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting mpdecimal-4.0.0: .......... done
[132releng-armv7-quarterly-job-12] |   |   `-- Installing readline-8.2.10...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting readline-8.2.10: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Extracting python39-3.9.18_2: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting py39-setuptools-63.1.0_1: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Installing suitesparse-umfpack-6.3.2...
[132releng-armv7-quarterly-job-12] |   | `-- Installing suitesparse-amd-3.3.1...
[132releng-armv7-quarterly-job-12] |   |   `-- Installing suitesparse-config-7.6.1...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting suitesparse-config-7.6.1: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Extracting suitesparse-amd-3.3.1: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing suitesparse-camd-3.3.1...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting suitesparse-camd-3.3.1: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing suitesparse-ccolamd-3.3.2...
[132releng-armv7-quarterly-job-12] |   | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Installing suitesparse-cholmod-5.2.0...
[132releng-armv7-quarterly-job-12] |   |   `-- Installing suitesparse-colamd-3.3.2...
[132releng-armv7-quarterly-job-12] |   |   `-- Extracting suitesparse-colamd-3.3.2: .......... done
[132releng-armv7-quarterly-job-12] |   | `-- Extracting suitesparse-cholmod-5.2.0: .......... done
[132releng-armv7-quarterly-job-12] |   `-- Extracting suitesparse-umfpack-6.3.2: .......... done
[132releng-armv7-quarterly-job-12] `-- Extracting py39-numpy-1.25.0_6,1: .......... done
[132releng-armv7-quarterly-job-12] Extracting py39-h5py-3.10.0_1: .......... done
=====
Message from gcc13-13.2.0_4:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc13

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18_2:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   py39-bitshuffle-0.5.1 depends on package: py39-h5py>=2.4.0 - found
===>   Returning to build of py39-bitshuffle-0.5.1
===>   py39-bitshuffle-0.5.1 depends on package: py39-numpy>=0,1 - found
===>   py39-bitshuffle-0.5.1 depends on package: py39-setuptools>=0.7 - found
===>   py39-bitshuffle-0.5.1 depends on package: py39-wheel>=0 - not found
===>   Installing existing package /packages/All/py39-wheel-0.43.0.pkg
[132releng-armv7-quarterly-job-12] Installing py39-wheel-0.43.0...
[132releng-armv7-quarterly-job-12] Extracting py39-wheel-0.43.0: .......... done
===>   py39-bitshuffle-0.5.1 depends on package: py39-wheel>=0 - found
===>   Returning to build of py39-bitshuffle-0.5.1
===>   py39-bitshuffle-0.5.1 depends on package: pkgconf>=1.3.0_1 - not found
===>   Installing existing package /packages/All/pkgconf-2.2.0,1.pkg
[132releng-armv7-quarterly-job-12] Installing pkgconf-2.2.0,1...
[132releng-armv7-quarterly-job-12] Extracting pkgconf-2.2.0,1: .......... done
===>   py39-bitshuffle-0.5.1 depends on package: pkgconf>=1.3.0_1 - found
===>   Returning to build of py39-bitshuffle-0.5.1
===>   py39-bitshuffle-0.5.1 depends on executable: cython-3.9 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.37.pkg
[132releng-armv7-quarterly-job-12] Installing py39-cython-0.29.37...
[132releng-armv7-quarterly-job-12] Extracting py39-cython-0.29.37: .......... done
===>   py39-bitshuffle-0.5.1 depends on executable: cython-3.9 - found
===>   Returning to build of py39-bitshuffle-0.5.1
===>   py39-bitshuffle-0.5.1 depends on file: /usr/local/bin/python3.9 - found
===>   py39-bitshuffle-0.5.1 depends on package: py39-build>=0 - not found
===>   Installing existing package /packages/All/py39-build-1.2.1.pkg
[132releng-armv7-quarterly-job-12] Installing py39-build-1.2.1...
[132releng-armv7-quarterly-job-12] `-- Installing py39-packaging-23.2...
[132releng-armv7-quarterly-job-12] `-- Extracting py39-packaging-23.2: .......... done
[132releng-armv7-quarterly-job-12] `-- Installing py39-pyproject_hooks-1.0.0_2...
[132releng-armv7-quarterly-job-12] |   `-- Installing py39-tomli-2.0.1_2...
[132releng-armv7-quarterly-job-12] |   `-- Extracting py39-tomli-2.0.1_2: .......... done
[132releng-armv7-quarterly-job-12] `-- Extracting py39-pyproject_hooks-1.0.0_2: .......... done
[132releng-armv7-quarterly-job-12] Extracting py39-build-1.2.1: .......... done
===>   py39-bitshuffle-0.5.1 depends on package: py39-build>=0 - found
===>   Returning to build of py39-bitshuffle-0.5.1
===>   py39-bitshuffle-0.5.1 depends on package: py39-installer>=0 - not found
===>   Installing existing package /packages/All/py39-installer-0.7.0.pkg
[132releng-armv7-quarterly-job-12] Installing py39-installer-0.7.0...
[132releng-armv7-quarterly-job-12] Extracting py39-installer-0.7.0: .......... done
===>   py39-bitshuffle-0.5.1 depends on package: py39-installer>=0 - found
===>   Returning to build of py39-bitshuffle-0.5.1
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-bitshuffle-0.5.1
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py39-bitshuffle-0.5.1
* Getting build dependencies for wheel...
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.freebsd-13.2-RELEASE-p6-arm-cpython-39
creating build/lib.freebsd-13.2-RELEASE-p6-arm-cpython-39/bitshuffle
copying bitshuffle/__init__.py -> build/lib.freebsd-13.2-RELEASE-p6-arm-cpython-39/bitshuffle
running build_ext
/usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/archivers/py-bitshuffle/work-py39/bitshuffle-0.5.1/bitshuffle/ext.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling bitshuffle/ext.pyx because it depends on /usr/local/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
[1/1] Cythonizing bitshuffle/ext.pyx

#################################
# Compiling with OpenMP support #
#################################

building 'bitshuffle.ext' extension
creating build/temp.freebsd-13.2-RELEASE-p6-arm-cpython-39
creating build/temp.freebsd-13.2-RELEASE-p6-arm-cpython-39/bitshuffle
creating build/temp.freebsd-13.2-RELEASE-p6-arm-cpython-39/lz4
creating build/temp.freebsd-13.2-RELEASE-p6-arm-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=5 -DBSHUF_VERSION_POINT=1 -Isrc/ -Ilz4/ -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c bitshuffle/ext.c -o build/temp.freebsd-13.2-RELEASE-p6-arm-cpython-39/bitshuffle/ext.o -fopenmp -mcpu=native -fPIC -ffast-math -O3 -std=c99 -fno-strict-aliasing
In file included from bitshuffle/ext.c:798:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929:
/usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
bitshuffle/ext.c:808:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 warning and 1 error generated.
error: command '/usr/bin/cc' failed with exit code 1

ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1

Stop.
make: stopped in /usr/ports/archivers/py-bitshuffle