From nobody Tue Apr 16 07:38:45 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VJbWT6rXGz5G3Qm for ; Tue, 16 Apr 2024 07:38:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VJbWT42DFz4q1m for ; Tue, 16 Apr 2024 07:38:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1713253125; a=rsa-sha256; cv=none; b=OWWutgZLSsPnm1dVAVULeWRxnemqcEIDFOqBAlKcCGi/J7k00slIfjxJszGFUNjRHggd/Z 9eYj4lgBKHre75NoEIGItk1U1QKyu8x/evWLxInMrCU5fA1rQzhwHGVqF3epFKbzBGflnr wzugrnXG4XSYs0xd2sMVAZbYA2gIhV1m7iE9zBmzvwgunnBZxMN2J0OZpXIuKfSaIGVSCH 9nbh1an1KyKgkPl/9sKqm8oqRhpN0FJfhZorN1tk4c6ueSmxCOHW+F+ytxBAv+4vTWyk/O EmzZ4MPAPeydPrMPoBo0dbstUl6PVDDNJTDqodYqf89zJdMjz9WL4Bn4NxCglg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713253125; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=Cs3z60pwOVoH7Y1H6PtiNTZ0iM2/anKsWoe6cFJTU4o=; b=xxZs+aIrPH0qHcEpnuoCOfNpwfSuvvQnwUUbr6GLjAkdngVEJAuXFc7cL3UPfwYS4fbrhb 540mBbI1mYvtJVIGXMJ+C4dNI+mO3sWIegV6RfbfEqEE57pFZ00WVXc/GW26B8GNJ/a6IU OvMv7t0gtZS6JBVFU5d/7Oxw+x58fNQJoqh3giTuOSt/qKmMqGxBwVY0eM9Rqc8DJwE4p6 PkixSOzlyAGFl7bSnMdvEY/tNhWC0dfJX+0A1eSXmz9Nbw+ZrvZr659yzYirpogBxqlkAu Fw7uMdTy7u7PxZ0SGdHtkJG1TQbJCaA6rEtpOdEvVmKZrnHbc9VqBDTRuRCZyg== Received: from package19.nyi.freebsd.org (package19.nyi.freebsd.org [IPv6:2610:1c1:1:607e::16:7]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4VJbWT3S38zZlK for ; Tue, 16 Apr 2024 07:38:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 4221 by package19.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on package19.nyi.freebsd.org); Tue, 16 Apr 2024 07:38:45 +0000 To: jwb@FreeBSD.org Subject: [exp - 140amd64-default-build-as-user][biology/minimap2] Failed for minimap2-2.28 in package Cc: pkg-fallout@FreeBSD.org Date: Tue, 16 Apr 2024 07:38:45 +0000 Message-Id: <661e2b05.4221.76469f30@package19.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/package19/data/140amd64-default-build-as-user/68eb816d1485/logs/minimap2-2.28.log Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=140amd64-default-build-as-user&build=68eb816d1485 Log: =>> Building biology/minimap2 build started at Tue Apr 16 07:38:37 UTC 2024 port directory: /usr/ports/biology/minimap2 package name: minimap2-2.28 building for: FreeBSD 140amd64-default-build-as-user-job-02 14.0-RELEASE-p6 FreeBSD 14.0-RELEASE-p6 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 461 Apr 15 00:02 /usr/ports/biology/minimap2/Makefile Ports top last git commit: 68eb816d148 Ports top unclean checkout: no Port dir last git commit: 8efa6a22830 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6 Host OSVERSION: 1500006 Jail OSVERSION: 1400097 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p6 UNAME_r=14.0-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-1-g1e9f97d6 MASTERMNT=/poudriere/data/.m/140amd64-default-build-as-user/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/poudriere/data/.m/140amd64-default-build-as-user/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/poudriere/data/.m/140amd64-default-build-as-user/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/minimap2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/minimap2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/minimap2/work/.cache HOME=/wrkdirs/usr/ports/biology/minimap2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/minimap2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/minimap2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/minimap2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/minimap2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/minimap2/work/.cache HOME=/wrkdirs/usr/ports/biology/minimap2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/minimap2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/minimap2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIP T="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/minimap2" EXAMPLESDIR="share/examples/minimap2" DATADIR="share/minimap2" WWWDIR="www/minimap2" ETCDIR="etc/minimap2" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/minimap2 DOCSDIR=/usr/local/share/doc/minimap2 EXAMPLESDIR=/usr/local/share/examples/minimap2 WWWDIR=/usr/local/www/minimap2 ETCDIR=/usr/local/etc/minimap2 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> minimap2-2.28 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.1.pkg [140amd64-default-build-as-user-job-02] Installing pkg-1.21.1... [140amd64-default-build-as-user-job-02] Extracting pkg-1.21.1: .......... done ===> minimap2-2.28 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of minimap2-2.28 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user => lh3-minimap2-v2.28_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/lh3/minimap2/tar.gz/v2.28?dummy=/lh3-minimap2-v2.28_GH0.tar.gz fetch: https://codeload.github.com/lh3/minimap2/tar.gz/v2.28?dummy=/lh3-minimap2-v2.28_GH0.tar.gz: size unknown fetch: https://codeload.github.com/lh3/minimap2/tar.gz/v2.28?dummy=/lh3-minimap2-v2.28_GH0.tar.gz: size of remote file is not known lh3-minimap2-v2.28_GH0.tar.gz 254 kB 5775 kBps 00s ===> Fetching all distfiles required by minimap2-2.28 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by minimap2-2.28 for building => SHA256 Checksum OK for lh3-minimap2-v2.28_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MIT accepted by the user ===> Fetching all distfiles required by minimap2-2.28 for building ===> Extracting for minimap2-2.28 => SHA256 Checksum OK for lh3-minimap2-v2.28_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for minimap2-2.28 ===> Applying FreeBSD patches for minimap2-2.28 from /usr/ports/biology/minimap2/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> minimap2-2.28 depends on package: simde>0 - not found ===> Installing existing package /packages/All/simde-0.8.0.pkg [140amd64-default-build-as-user-job-02] Installing simde-0.8.0... [140amd64-default-build-as-user-job-02] Extracting simde-0.8.0: .......... done ===> minimap2-2.28 depends on package: simde>0 - found ===> Returning to build of minimap2-2.28 ===> minimap2-2.28 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [140amd64-default-build-as-user-job-02] Installing gmake-4.4.1... [140amd64-default-build-as-user-job-02] `-- Installing gettext-runtime-0.22.5... [140amd64-default-build-as-user-job-02] | `-- Installing indexinfo-0.3.1... [140amd64-default-build-as-user-job-02] | `-- Extracting indexinfo-0.3.1: .... done [140amd64-default-build-as-user-job-02] `-- Extracting gettext-runtime-0.22.5: .......... done [140amd64-default-build-as-user-job-02] Extracting gmake-4.4.1: .......... done ===> minimap2-2.28 depends on package: gmake>=4.4.1 - found ===> Returning to build of minimap2-2.28 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for minimap2-2.28 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for minimap2-2.28 cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include main.c -o main.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include kthread.c -o kthread.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include kalloc.c -o kalloc.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include misc.c -o misc.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include bseq.c -o bseq.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include sketch.c -o sketch.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include sdust.c -o sdust.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include options.c -o options.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include index.c -o index.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include lchain.c -o lchain.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include align.c -o align.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include hit.c -o hit.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include map.c -o map.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include format.c -o format.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include pe.c -o pe.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include seed.c -o seed.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include esterr.c -o esterr.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include splitidx.c -o splitidx.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -msse4.1 -isystem /usr/local/include ksw2_extz2_sse.c -o ksw2_extz2_simde.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -msse4.1 -isystem /usr/local/include ksw2_extd2_sse.c -o ksw2_extd2_simde.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -msse4.1 -isystem /usr/local/include ksw2_exts2_sse.c -o ksw2_exts2_simde.o cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -msse2 -isystem /usr/local/include ksw2_ll_sse.c -o ksw2_ll_simde.o cc -D_SDUST_MAIN -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ sdust.c kalloc.o -o sdust -lz cc -c -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ -isystem /usr/local/include example.c -o example.o ar -csru libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o lchain.o align.o hit.o map.o format.o pe.o seed.o esterr.o splitidx.o ksw2_extz2_simde.o ksw2_extd2_simde.o ksw2_exts2_simde.o ksw2_ll_simde.o cc -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread cc -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__ example.o -o minimap2-lite -L. -lminimap2 -lm -lz -lpthread =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for minimap2-2.28 ===> Generating temporary packing list mkdir -p /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin mkdir -p /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/man/man1 mkdir -p /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/share/minimap2 install -c minimap2 /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin install -c minimap2-lite /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin install -c sdust /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin install -c minimap2.1 /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/man/man1 cp -R test /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/share/minimap2 strip /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin/minimap2 strip /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin/minimap2-lite strip /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/bin/sdust ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-16T07:38:37+0000' 'PKG_NOTE_ports_top_git_hash=68eb816d148' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=8efa6a22830' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.1-1-g1e9f97d6' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for minimap2-2.28 ===> Building minimap2-2.28 pkg-static: Unable to access file /wrkdirs/usr/ports/biology/minimap2/work/stage/usr/local/man/man1/minimap2.1.gz:No such file or directory *** Error code 1 Stop. make: stopped in /usr/ports/biology/minimap2