[package - main-i386-default][science/py-dwave-samplers] Failed for py39-dwave-samplers-1.2.0 in configure

From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 16 Apr 2024 03:13:25 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy17/data/main-i386-default/pac25ee445c95_s605a00660ea/logs/py39-dwave-samplers-1.2.0.log
Build URL:      https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=pac25ee445c95_s605a00660ea
Log:

=>> Building science/py-dwave-samplers
build started at Tue Apr 16 03:13:01 UTC 2024
port directory: /usr/ports/science/py-dwave-samplers
package name: py39-dwave-samplers-1.2.0
building for: FreeBSD main-i386-default-job-05 15.0-CURRENT FreeBSD 15.0-CURRENT 1500018 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 1671 Jan 20 01:01 /usr/ports/science/py-dwave-samplers/Makefile
Ports top last git commit: ac25ee445c9
Ports top unclean checkout: no
Port dir last git commit: 2de22b0859b
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500006
Jail OSVERSION: 1500018
Job Id: 05




!!! Jail is newer than host. (Jail: 1500018, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1500018
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=15.0-CURRENT
LOCALBASE=/usr/local
UNAME_v=FreeBSD 15.0-CURRENT 1500018
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-1-g1e9f97d6
MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-i386-default/05/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  " BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644
"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.9  PYTHON_LIBDIR=lib/python3.9  PYTHON_PLATFORM=freebsd15  PYTHON_SITELIBDIR=lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/dwave-samplers"  EXAMPLESDIR="share/examples/dwave-samplers"  DATADIR="share/dwave-samplers"  WWWDIR="www/dwave-samplers"  ETCDIR="etc/dwave-samplers"
--End PLIST_SUB--

--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9  PYTHON_LIBDIR=/usr/local/lib/python3.9  PYTHON_PLATFORM=freebsd15  PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/dwave-samplers DOCSDIR=/usr/local/share/doc/dwave-samplers EXAMPLESDIR=/usr/local/share/examples/dwave-samplers  WWWDIR=/usr/local/www/dwave-samplers ETCDIR=/usr/local/etc/dwave-samplers
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  8192
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-dwave-samplers-1.2.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.2.pkg
[main-i386-default-job-05] Installing pkg-1.21.2...
[main-i386-default-job-05] Extracting pkg-1.21.2: .......... done
===>   py39-dwave-samplers-1.2.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-dwave-samplers-1.2.0
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by py39-dwave-samplers-1.2.0 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by py39-dwave-samplers-1.2.0 for building
=> SHA256 Checksum OK for dwavesystems-dwave-samplers-1.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by py39-dwave-samplers-1.2.0 for building
===>  Extracting for py39-dwave-samplers-1.2.0
=> SHA256 Checksum OK for dwavesystems-dwave-samplers-1.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-dwave-samplers-1.2.0
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-dwave-samplers-1.2.0 depends on package: py39-dimod>=0.12.13 - not found
===>   Installing existing package /packages/All/py39-dimod-0.12.14.pkg
[main-i386-default-job-05] Installing py39-dimod-0.12.14...
[main-i386-default-job-05] `-- Installing py39-numpy-1.25.0_6,1...
[main-i386-default-job-05] |   `-- Installing gcc13-13.2.0_4...
[main-i386-default-job-05] |   | `-- Installing binutils-2.40_5,1...
[main-i386-default-job-05] |   |   `-- Installing gettext-runtime-0.22.5...
[main-i386-default-job-05] |   |   | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-05] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-05] |   |   `-- Extracting gettext-runtime-0.22.5: .......... done
[main-i386-default-job-05] |   |   `-- Installing zstd-1.5.6...
[main-i386-default-job-05] |   |   | `-- Installing liblz4-1.9.4_1,1...
<snip>
[main-i386-default-job-05] |   |   `-- Installing xorg-fonts-truetype-7.7_1...
[main-i386-default-job-05] |   |   | `-- Installing dejavu-2.37_3...
[main-i386-default-job-05] |   |   |   `-- Installing mkfontscale-1.2.3...
[main-i386-default-job-05] |   |   |   | `-- Installing libfontenc-1.1.8...
[main-i386-default-job-05] |   |   |   | `-- Extracting libfontenc-1.1.8: ......... done
[main-i386-default-job-05] |   |   |   `-- Extracting mkfontscale-1.2.3: ....... done
[main-i386-default-job-05] |   |   | `-- Extracting dejavu-2.37_3: .......... done
[main-i386-default-job-05] |   |   | `-- Installing font-bh-ttf-1.0.3_5...
[main-i386-default-job-05] |   |   | `-- Extracting font-bh-ttf-1.0.3_5: .......... done
[main-i386-default-job-05] |   |   | `-- Installing font-misc-ethiopic-1.0.4...
[main-i386-default-job-05] |   |   | `-- Extracting font-misc-ethiopic-1.0.4: ...... done
[main-i386-default-job-05] |   |   | `-- Installing font-misc-meltho-1.0.3_5...
[main-i386-default-job-05] |   |   | `-- Extracting font-misc-meltho-1.0.3_5: .......... done
[main-i386-default-job-05] |   |   `-- Extracting xorg-fonts-truetype-7.7_1: ... done
[main-i386-default-job-05] |   | `-- Extracting pango-1.50.14: .......... done
[main-i386-default-job-05] |   `-- Extracting graphviz-9.0.0_4: .......... done
[main-i386-default-job-05] `-- Extracting py39-pydot-2.0.0: .......... done
[main-i386-default-job-05] `-- Installing py39-pygraphviz-1.6...
[main-i386-default-job-05] `-- Extracting py39-pygraphviz-1.6: .......... done
[main-i386-default-job-05] `-- Installing py39-scikit-sparse-0.4.8_8...
[main-i386-default-job-05] |   `-- Installing py39-scipy-1.11.1_2...
[main-i386-default-job-05] |   | `-- Installing blas-3.12.0_1...
[main-i386-default-job-05] |   | `-- Extracting blas-3.12.0_1: ........ done
[main-i386-default-job-05] |   `-- Extracting py39-scipy-1.11.1_2: .......... done
[main-i386-default-job-05] `-- Extracting py39-scikit-sparse-0.4.8_8: .......... done
[main-i386-default-job-05] `-- Installing py39-yaml-6.0.1...
[main-i386-default-job-05] |   `-- Installing libyaml-0.2.5...
[main-i386-default-job-05] |   `-- Extracting libyaml-0.2.5: ......... done
[main-i386-default-job-05] `-- Extracting py39-yaml-6.0.1: .......... done
[main-i386-default-job-05] Extracting py39-networkx-3.3,1: .......... done
==> Running trigger: fontconfig.ucl
Running fc-cache to build fontconfig cache...
==> Running trigger: gio-modules.ucl
Generating GIO modules cache
==> Running trigger: glib-schemas.ucl
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from boost-libs-1.84.0:

--
You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
=====
Message from freetype2-2.13.2:

--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).

The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:

FREETYPE_PROPERTIES=pcf:no-long-family-names=1

How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from postgresql15-client-15.6:

--
The PostgreSQL port has a collection of "side orders":

postgresql-docs
  For all of the html documentation

p5-Pg
  A perl5 API for client access to PostgreSQL databases.

postgresql-tcltk
  If you want tcl/tk client support.

postgresql-jdbc
  For Java JDBC support.

postgresql-odbc
  For client access from unix applications using ODBC as access
  method. Not needed to access unix PostgreSQL servers from Win32
  using ODBC. See below.

ruby-postgres, py-psycopg2
  For client access to PostgreSQL databases using the ruby & python
  languages.

postgresql-plperl, postgresql-pltcl & postgresql-plruby
  For using perl5, tcl & ruby as procedural languages.

postgresql-contrib
  Lots of contributed utilities, postgresql functions and
  datatypes. There you find pg_standby, pgcrypto and many other cool
  things.

etc...
=====
Message from py39-pandas-2.0.3_2,1:

--
Install math/py-statsmodels to enable parts of pandas.stats.
Install devel/py-xarray to enable the to_xarray() function.
=====
Message from dejavu-2.37_3:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===>   py39-dwave-samplers-1.2.0 depends on package: py39-networkx>=2.6.3 - found
===>   Returning to build of py39-dwave-samplers-1.2.0
===>   py39-dwave-samplers-1.2.0 depends on package: py39-numpy>=1.16,1<1.26,1 - found
===>   py39-dwave-samplers-1.2.0 depends on package: py39-reno>0 - not found
===>   Installing existing package /packages/All/py39-reno-4.1.0.pkg
[main-i386-default-job-05] Installing py39-reno-4.1.0...
[main-i386-default-job-05] `-- Installing py39-dulwich-0.21.2...
[main-i386-default-job-05] `-- Extracting py39-dulwich-0.21.2: .......... done
[main-i386-default-job-05] `-- Installing py39-pbr-5.11.1...
[main-i386-default-job-05] `-- Extracting py39-pbr-5.11.1: .......... done
[main-i386-default-job-05] Extracting py39-reno-4.1.0: .......... done
===>   py39-dwave-samplers-1.2.0 depends on package: py39-reno>0 - found
===>   Returning to build of py39-dwave-samplers-1.2.0
===>   py39-dwave-samplers-1.2.0 depends on package: py39-cython3>0 - not found
===>   Installing existing package /packages/All/py39-cython3-3.0.10.pkg
[main-i386-default-job-05] Installing py39-cython3-3.0.10...
[main-i386-default-job-05] Extracting py39-cython3-3.0.10: .......... done
===>   py39-dwave-samplers-1.2.0 depends on package: py39-cython3>0 - found
===>   Returning to build of py39-dwave-samplers-1.2.0
===>   py39-dwave-samplers-1.2.0 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-dwave-samplers-1.2.0 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-dwave-samplers-1.2.0
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 19, in <module>
    import dimod
  File "/usr/local/lib/python3.9/site-packages/dimod/__init__.py", line 18, in <module>
    from dimod.constrained import *
  File "/usr/local/lib/python3.9/site-packages/dimod/constrained/__init__.py", line 15, in <module>
    from dimod.constrained.constrained import *
  File "/usr/local/lib/python3.9/site-packages/dimod/constrained/constrained.py", line 65, in <module>
    from dimod.binary.binary_quadratic_model import BinaryQuadraticModel, Binary
  File "/usr/local/lib/python3.9/site-packages/dimod/binary/__init__.py", line 15, in <module>
    from dimod.binary.binary_quadratic_model import *
  File "/usr/local/lib/python3.9/site-packages/dimod/binary/binary_quadratic_model.py", line 54, in <module>
    from dimod.binary.cybqm import cyBQM_float32, cyBQM_float64
  File "/usr/local/lib/python3.9/site-packages/dimod/binary/cybqm/__init__.py", line 15, in <module>
    from dimod.binary.cybqm.cybqm_float32 import cyBQM_float32
  File "dimod/binary/cybqm/cybqm_float32.pyx", line 1, in init dimod.binary.cybqm.cybqm_float32
  File "dimod/cyqmbase/cyqmbase_float32.pyx", line 1, in init dimod.cyqmbase.cyqmbase_float32
  File "dimod/cyvariables.pyx", line 26, in init dimod.cyvariables
  File "/usr/local/lib/python3.9/site-packages/dimod/utilities.py", line 25, in <module>
    from dimod.typing import Variable
  File "/usr/local/lib/python3.9/site-packages/dimod/typing.py", line 93, in <module>
    import networkx as nx
  File "/usr/local/lib/python3.9/site-packages/networkx/__init__.py", line 19, in <module>
    from networkx import utils
  File "/usr/local/lib/python3.9/site-packages/networkx/utils/__init__.py", line 7, in <module>
    from networkx.utils.backends import *
  File "/usr/local/lib/python3.9/site-packages/networkx/utils/backends.py", line 258, in <module>
    backends = _get_backends("networkx.backends")
  File "/usr/local/lib/python3.9/site-packages/networkx/utils/backends.py", line 234, in _get_backends
    items = entry_points(group=group)
TypeError: entry_points() got an unexpected keyword argument 'group'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-dwave-samplers