[exp - 124amd64-default-build-as-user][math/libRmath] Failed for libRmath-4.3.1 in build
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Date: Sat, 30 Sep 2023 13:41:03 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/package19/data/124amd64-default-build-as-user/6c4bce474ffc/logs/libRmath-4.3.1.log
Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=124amd64-default-build-as-user&build=6c4bce474ffc
Log:
=>> Building math/libRmath
build started at Sat Sep 30 13:39:52 UTC 2023
port directory: /usr/ports/math/libRmath
package name: libRmath-4.3.1
building for: FreeBSD 124amd64-default-build-as-user-job-07 12.4-RELEASE-p5 FreeBSD 12.4-RELEASE-p5 amd64
maintained by: ports@FreeBSD.org
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=======================<phase: check-sanity >============================
===> NOTICE:
The libRmath port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> libRmath-4.3.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.7.pkg
[124amd64-default-build-as-user-job-07] Installing pkg-1.20.7...
[124amd64-default-build-as-user-job-07] Extracting pkg-1.20.7: .......... done
===> libRmath-4.3.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libRmath-4.3.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The libRmath port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.3.1 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
The libRmath port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.3.1 for building
=> SHA256 Checksum OK for R-4.3.1.tar.gz.
<snip>
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
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checking whether leap seconds are treated according to POSIX... yes
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checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... yes
checking for lpr... lpr
checking for paperconf... false
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran12 option to support OpenMP... (cached) -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... no
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
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config.status: creating m4/Makefile
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config.status: creating src/Makefile
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config.status: creating src/extra/Makefile
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config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
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config.status: creating src/library/compiler/DESCRIPTION
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config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
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config.status: creating src/library/grid/Makefile
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config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
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config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
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config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
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config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
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config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
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R is now configured for amd64-portbld-freebsd12.4
Source directory: .
Installation directory: /usr/local
C compiler: cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing
Fortran fixed-form compiler: gfortran12 -O -Wl,-rpath=/usr/local/lib/gcc12
Default C++ compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++11 compiler: c++ -std=gnu++11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++14 compiler: c++ -std=gnu++14 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++17 compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++20 compiler: c++ -std=gnu++20 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++23 compiler: c++ -std=gnu++2b -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
Fortran free-form compiler: gfortran12 -Wl,-rpath=/usr/local/lib/gcc12
Obj-C compiler: cc -g -O2 -fobjc-exceptions
Interfaces supported:
External libraries: pcre2, curl
Additional capabilities:
Options enabled: shared BLAS, R profiling
Capabilities skipped: PNG, JPEG, TIFF, NLS, cairo, ICU
Options not enabled: memory profiling
Recommended packages: yes
configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
configure: WARNING: I could not determine a browser
configure: WARNING: I could not determine a PDF viewer
===========================================================================
=======================<phase: build >============================
===> Building for libRmath-4.3.1
--- ../../include/Rconfig.h ---
--- Copy ---
--- inc ---
--- ../../include/Rconfig.h ---
(cd ../../include; /usr/bin/make Rconfig.h)
--- Rconfig.h ---
Copying source files
--- inc ---
(cd ../../include; /usr/bin/make Rmath.h)
--- Makedeps ---
--- mlutils.d ---
--- d1mach.d ---
making mlutils.d from mlutils.c
--- mlutils.d ---
In file included from mlutils.c:24:
./../nmath.h:44:10: fatal error: 'Rmath.h' file not found
#include <Rmath.h>
^~~~~~~~~
1 error generated.
*** [mlutils.d] Error code 1
make[2]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
--- d1mach.d ---
making d1mach.d from d1mach.c
--- inc ---
--- Rmath.h ---
*** [inc] Error code 2
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
--- Makedeps ---
1 error
make[2]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
*** [Makedeps] Error code 2
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
2 errors
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.3.1/src/nmath/standalone
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/libRmath