[package - main-amd64-default][biology/viennarna] Failed for viennarna-2.6.3 in build
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Date: Sat, 02 Sep 2023 18:21:03 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p2c18c2a2da98_s4a9cd9fc22/logs/viennarna-2.6.3.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p2c18c2a2da98_s4a9cd9fc22
Log:
=>> Building biology/viennarna
build started at Sat Sep 2 18:15:56 UTC 2023
port directory: /usr/ports/biology/viennarna
package name: viennarna-2.6.3
building for: FreeBSD main-amd64-default-job-05 15.0-CURRENT FreeBSD 15.0-CURRENT 1500000 amd64
maintained by: yuri@FreeBSD.org
Makefile ident:
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Jail OSVERSION: 1500000
Job Id: 05
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===> The following configuration options are available for viennarna-2.6.3:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License ViennaRNALicense accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> viennarna-2.6.3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.6.pkg
[main-amd64-default-job-05] Installing pkg-1.20.6...
[main-amd64-default-job-05] Extracting pkg-1.20.6: .......... done
===> viennarna-2.6.3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of viennarna-2.6.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License ViennaRNALicense accepted by the user
===> Fetching all distfiles required by viennarna-2.6.3 for building
===========================================================================
=======================<phase: checksum >============================
===> License ViennaRNALicense accepted by the user
===> Fetching all distfiles required by viennarna-2.6.3 for building
=> SHA256 Checksum OK for ViennaRNA-2.6.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License ViennaRNALicense accepted by the user
===> Fetching all distfiles required by viennarna-2.6.3 for building
===> Extracting for viennarna-2.6.3
=> SHA256 Checksum OK for ViennaRNA-2.6.3.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for viennarna-2.6.3
===> Applying FreeBSD patches for viennarna-2.6.3 from /usr/ports/biology/viennarna/files
===========================================================================
=======================<phase: build-depends >============================
===> viennarna-2.6.3 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.2.15.pkg
[main-amd64-default-job-05] Installing bash-5.2.15...
[main-amd64-default-job-05] `-- Installing gettext-runtime-0.22_1...
[main-amd64-default-job-05] | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-05] | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-05] `-- Extracting gettext-runtime-0.22_1: .......... done
[main-amd64-default-job-05] `-- Installing readline-8.2.1...
[main-amd64-default-job-05] `-- Extracting readline-8.2.1: .......... done
[main-amd64-default-job-05] Extracting bash-5.2.15: .......... done
<snip>
mv -f $depbase.Tpo $depbase.Po
depbase=`echo rna_alphabet.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT rna_alphabet.o -MD -MP -MF $depbase.Tpo -c -o rna_alphabet.o rna_alphabet.cpp &&\
mv -f $depbase.Tpo $depbase.Po
1 warning generated.
depbase=`echo rnaforest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT rnaforest.o -MD -MP -MF $depbase.Tpo -c -o rnaforest.o rnaforest.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo rnafuncs.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT rnafuncs.o -MD -MP -MF $depbase.Tpo -c -o rnafuncs.o rnafuncs.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo anchors/bplex.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT anchors/bplex.o -MD -MP -MF $depbase.Tpo -c -o anchors/bplex.o anchors/bplex.cpp &&\
mv -f $depbase.Tpo $depbase.Po
anchors/bplex.lpp:5:1: warning: class 'Pair' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
class Pair;
^
./anchors/basepair.h:7:8: note: previous use is here
struct Pair {
^
anchors/bplex.lpp:5:1: note: did you mean struct here?
class Pair;
^~~~~
struct
anchors/bplex.cpp:1106:16: warning: function 'yyinput' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static int yyinput (void)
^
2 warnings generated.
depbase=`echo anchors/shape.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT anchors/shape.o -MD -MP -MF $depbase.Tpo -c -o anchors/shape.o anchors/shape.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo anchors/anchors.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT anchors/anchors.o -MD -MP -MF $depbase.Tpo -c -o anchors/anchors.o anchors/anchors.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo frontend/Arguments.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT frontend/Arguments.o -MD -MP -MF $depbase.Tpo -c -o frontend/Arguments.o frontend/Arguments.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo frontend/rnaforester_options.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT frontend/rnaforester_options.o -MD -MP -MF $depbase.Tpo -c -o frontend/rnaforester_options.o frontend/rnaforester_options.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo TED/rnaforestsz.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT TED/rnaforestsz.o -MD -MP -MF $depbase.Tpo -c -o TED/rnaforestsz.o TED/rnaforestsz.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo wmatch/glib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT wmatch/glib.o -MD -MP -MF $depbase.Tpo -c -o wmatch/glib.o wmatch/glib.c &&\
mv -f $depbase.Tpo $depbase.Po
In file included from wmatch/glib.c:1:
./wmatch/graphtypes.h:49:33: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern EuclidGraph ReadEuclid(),NewEuclid();
^
./wmatch/graphtypes.h:71:17: note: conflicting prototype is here
EuclidGraph NewEuclid(int size);
^
./wmatch/graphtypes.h:60:34: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern MatrixGraph ReadMatrix(), NewMatrix();
^
./wmatch/graphtypes.h:72:17: note: conflicting prototype is here
MatrixGraph NewMatrix(int size);
^
./wmatch/graphtypes.h:49:20: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern EuclidGraph ReadEuclid(),NewEuclid();
^
./wmatch/graphtypes.h:76:17: note: conflicting prototype is here
EuclidGraph ReadEuclid(int *size,char *file);
^
./wmatch/graphtypes.h:60:20: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern MatrixGraph ReadMatrix(), NewMatrix();
^
./wmatch/graphtypes.h:78:17: note: conflicting prototype is here
MatrixGraph ReadMatrix(int *size,char *file);
^
./wmatch/graphtypes.h:50:12: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern int eucdist(),eucdistsq();
^
./wmatch/graphtypes.h:80:9: note: conflicting prototype is here
int eucdist (EuclidGraph graph,int i,int j);
^
./wmatch/graphtypes.h:50:22: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern int eucdist(),eucdistsq();
^
./wmatch/graphtypes.h:82:9: note: conflicting prototype is here
int eucdistsq(EuclidGraph graph,int i,int j);
^
6 warnings generated.
depbase=`echo wmatch/wmatch.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I.. -I../../../src/ViennaRNA -I../../../src -DVRNA_WITH_NAVIEW_LAYOUT -I/usr/local/include -I./anchors -I./frontend -I./TED -I./utils -I./wmatch -isystem /usr/local/include -I../g2-0.72/include/ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT wmatch/wmatch.o -MD -MP -MF $depbase.Tpo -c -o wmatch/wmatch.o wmatch/wmatch.c &&\
mv -f $depbase.Tpo $depbase.Po
In file included from wmatch/wmatch.c:15:
./wmatch/graphtypes.h:49:33: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern EuclidGraph ReadEuclid(),NewEuclid();
^
./wmatch/graphtypes.h:71:17: note: conflicting prototype is here
EuclidGraph NewEuclid(int size);
^
./wmatch/graphtypes.h:60:34: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern MatrixGraph ReadMatrix(), NewMatrix();
^
./wmatch/graphtypes.h:72:17: note: conflicting prototype is here
MatrixGraph NewMatrix(int size);
^
./wmatch/graphtypes.h:49:20: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern EuclidGraph ReadEuclid(),NewEuclid();
^
./wmatch/graphtypes.h:76:17: note: conflicting prototype is here
EuclidGraph ReadEuclid(int *size,char *file);
^
./wmatch/graphtypes.h:60:20: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern MatrixGraph ReadMatrix(), NewMatrix();
^
./wmatch/graphtypes.h:78:17: note: conflicting prototype is here
MatrixGraph ReadMatrix(int *size,char *file);
^
./wmatch/graphtypes.h:50:12: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern int eucdist(),eucdistsq();
^
./wmatch/graphtypes.h:80:9: note: conflicting prototype is here
int eucdist (EuclidGraph graph,int i,int j);
^
./wmatch/graphtypes.h:50:22: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent declaration [-Wdeprecated-non-prototype]
extern int eucdist(),eucdistsq();
^
./wmatch/graphtypes.h:82:9: note: conflicting prototype is here
int eucdistsq(EuclidGraph graph,int i,int j);
^
6 warnings generated.
c++ -Wall -std=c++98 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -L../g2-0.72 -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong -o RNAforester anchors/bplex.o anchors/shape.o anchors/anchors.o aligner.o main.o forestbase.o parser.o progressive_align.o rna_profile_alignment.o rna_alignment.o rna_algebra.o rna_alphabet.o rnaforest.o rnafuncs.o frontend/Arguments.o frontend/rnaforester_options.o TED/rnaforestsz.o wmatch/glib.o wmatch/wmatch.o -fno-strict-aliasing -L../../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++ -lg2 -L/usr/local/lib
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester/src'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester/src'
Making all in man
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester/man'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester/man'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/RNAforester'
Making all in src/Kinwalker
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker'
gmake all-recursive
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker'
Making all in man
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker/man'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker/man'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker'
c++ -DHAVE_CONFIG_H -I. -I./../../src/ViennaRNA -I./../../src -DVRNA_WITH_NAVIEW_LAYOUT -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp
c++ -DHAVE_CONFIG_H -I. -I./../../src/ViennaRNA -I./../../src -DVRNA_WITH_NAVIEW_LAYOUT -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT Energy.o -MD -MP -MF .deps/Energy.Tpo -c -o Energy.o Energy.cpp
mv -f .deps/main.Tpo .deps/main.Po
c++ -DHAVE_CONFIG_H -I. -I./../../src/ViennaRNA -I./../../src -DVRNA_WITH_NAVIEW_LAYOUT -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT MorganHiggs.o -MD -MP -MF .deps/MorganHiggs.Tpo -c -o MorganHiggs.o MorganHiggs.cpp
mv -f .deps/Energy.Tpo .deps/Energy.Po
c++ -DHAVE_CONFIG_H -I. -I./../../src/ViennaRNA -I./../../src -DVRNA_WITH_NAVIEW_LAYOUT -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o Node.cpp
MorganHiggs.cpp:528:26: warning: adding 'size_t' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int]
if(MHS_debug) cout<<i+" "+PrintBasePair(mStack.bp[i])<<endl;
~^~~~
MorganHiggs.cpp:528:26: note: use array indexing to silence this warning
Node.cpp:65:38: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
struct BasePairConflict :public std::binary_function<std::pair<int,int>,std::pair<int,int>,bool>{
~~~~~^~~~~~~~~~~~~~~
__binary_function
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
Node.cpp:392:49: error: no member named 'mem_fun' in namespace 'std'; did you mean 'mem_fn'?
if(find_if(extrema.begin(),extrema.end(),std::mem_fun(&Node::IsTranscribed))==extrema.end()){
~~~~~^~~~~~~
mem_fn
/usr/include/c++/v1/__functional/mem_fn.h:52:1: note: 'mem_fn' declared here
mem_fn(_Rp _Tp::* __pm) _NOEXCEPT
^
Node.cpp:471:56: error: no member named 'mem_fun' in namespace 'std'; did you mean 'mem_fn'?
if(find_if(extrema.begin()+i,extrema.end(),std::mem_fun(&Node::IsTranscribed))==extrema.end()) Node::transcribed_front_maximal=true;
~~~~~^~~~~~~
mem_fn
/usr/include/c++/v1/__functional/mem_fn.h:52:1: note: 'mem_fn' declared here
mem_fn(_Rp _Tp::* __pm) _NOEXCEPT
^
Node.cpp:770:98: error: no member named 'bind2nd' in namespace 'std'
std::vector<std::pair<int,int> >::iterator it=remove_if(basepairs.begin(),basepairs.end(),std::bind2nd(BasePairConflict(),bp_to_add));
~~~~~^
4 errors generated.
gmake[5]: *** [Makefile:487: Node.o] Error 1
gmake[5]: *** Waiting for unfinished jobs....
1 warning generated.
mv -f .deps/MorganHiggs.Tpo .deps/MorganHiggs.Po
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker'
gmake[4]: *** [Makefile:507: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker'
gmake[3]: *** [Makefile:354: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3/src/Kinwalker'
gmake[2]: *** [Makefile:727: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3'
gmake[1]: *** [Makefile:610: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.6.3'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/viennarna