[package - 132powerpc64le-quarterly][math/R-cran-units] Failed for R-cran-units-0.8.4 in stage
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Date: Sat, 28 Oct 2023 08:59:06 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: eduardo@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/132powerpc64le-quarterly/e5430fa2f579/logs/R-cran-units-0.8.4.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=132powerpc64le-quarterly&build=e5430fa2f579
Log:
=>> Building math/R-cran-units
build started at Sat Oct 28 08:55:56 UTC 2023
port directory: /usr/ports/math/R-cran-units
package name: R-cran-units-0.8.4
building for: FreeBSD 132powerpc64le-quarterly-job-01 13.2-RELEASE FreeBSD 13.2-RELEASE powerpc
maintained by: eduardo@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-units-0.8.4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.8.pkg
[132powerpc64le-quarterly-job-01] Installing pkg-1.20.8...
[132powerpc64le-quarterly-job-01] Extracting pkg-1.20.8: .......... done
===> R-cran-units-0.8.4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-units-0.8.4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-units-0.8.4 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-units-0.8.4 for building
=> SHA256 Checksum OK for units_0.8-4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-units-0.8.4 for building
===> Extracting for R-cran-units-0.8.4
=> SHA256 Checksum OK for units_0.8-4.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-units-0.8.4
===========================================================================
=======================<phase: build-depends >============================
===> R-cran-units-0.8.4 depends on package: R-cran-Rcpp>=0.12.10 - not found
===> Installing existing package /packages/All/R-cran-Rcpp-1.0.11.pkg
[132powerpc64le-quarterly-job-01] Installing R-cran-Rcpp-1.0.11...
[132powerpc64le-quarterly-job-01] `-- Installing R-4.3.1_1...
[132powerpc64le-quarterly-job-01] | `-- Installing cairo-1.17.4_2,3...
[132powerpc64le-quarterly-job-01] | | `-- Installing fontconfig-2.14.2,1...
[132powerpc64le-quarterly-job-01] | | `-- Installing expat-2.5.0...
[132powerpc64le-quarterly-job-01] | | `-- Extracting expat-2.5.0: .......... done
[132powerpc64le-quarterly-job-01] | | `-- Installing freetype2-2.13.1...
[132powerpc64le-quarterly-job-01] | | | `-- Installing brotli-1.1.0,1...
[132powerpc64le-quarterly-job-01] | | | `-- Extracting brotli-1.1.0,1: .......... done
[132powerpc64le-quarterly-job-01] | | | `-- Installing png-1.6.40...
[132powerpc64le-quarterly-job-01] | | | `-- Extracting png-1.6.40: .......... done
[132powerpc64le-quarterly-job-01] | | `-- Extracting freetype2-2.13.1: .......... done
[132powerpc64le-quarterly-job-01] | | `-- Extracting fontconfig-2.14.2,1: .......... done
[132powerpc64le-quarterly-job-01] | | `-- Installing gettext-runtime-0.22_1...
<snip>
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from ghostscript9-agpl-base-9.56.1_12:
--
This package installs a script named dvipdf that depends on dvips. If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from libthai-0.1.29:
--
===> NOTICE:
The libthai port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from dejavu-2.37_3:
--
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/share/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> R-cran-units-0.8.4 depends on package: R-cran-Rcpp>=0.12.10 - found
===> Returning to build of R-cran-units-0.8.4
===> R-cran-units-0.8.4 depends on file: /usr/local/bin/R - found
===> R-cran-units-0.8.4 depends on executable: gfortran12 - found
===> R-cran-units-0.8.4 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> R-cran-units-0.8.4 depends on shared library: libexpat.so - found (/usr/local/lib/libexpat.so)
===> R-cran-units-0.8.4 depends on shared library: libudunits2.so - not found
===> Installing existing package /packages/All/udunits-2.2.28.pkg
[132powerpc64le-quarterly-job-01] Installing udunits-2.2.28...
[132powerpc64le-quarterly-job-01] Extracting udunits-2.2.28: .......... done
===> R-cran-units-0.8.4 depends on shared library: libudunits2.so - found (/usr/local/lib/libudunits2.so)
===> Returning to build of R-cran-units-0.8.4
===========================================================================
=======================<phase: configure >============================
===> Configuring for R-cran-units-0.8.4
===========================================================================
=======================<phase: build >============================
===========================================================================
=======================<phase: run-depends >============================
===> R-cran-units-0.8.4 depends on package: R-cran-Rcpp>=0.12.10 - found
===> R-cran-units-0.8.4 depends on file: /usr/local/bin/R - found
===> R-cran-units-0.8.4 depends on executable: gfortran12 - found
===========================================================================
=======================<phase: stage >============================
===> Staging for R-cran-units-0.8.4
===> Generating temporary packing list
* installing *source* package 'units' ...
** package 'units' successfully unpacked and MD5 sums checked
** using staged installation
configure: units: 0.8-4
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether c++ -std=gnu++17 accepts -g... yes
checking for c++ -std=gnu++17 option to enable C++11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for _Bool... no
checking for stdbool.h that conforms to C99... yes
checking for error_at_line... no
checking for gcc... cc
checking whether the compiler supports GNU C... yes
checking whether cc accepts -g... yes
checking for cc option to enable C11 features... none needed
checking for XML_ParserCreate in -lexpat... yes
checking for udunits2.h... yes
checking for ut_read_xml in -ludunits2... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: 'FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)'
gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-units/work/units/src'
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c udunits.cpp -o udunits.o
c++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -o units.so RcppExports.o udunits.o -lexpat -lexpat -ludunits2 -L/usr/local/lib/R/lib -lR
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-units/work/units/src'
installing to /wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library/00LOCK-units/00new/units/libs
** R
** demo
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** caught segfault ***
address 0x656d6d6f632e0074, cause 'memory not mapped'
Traceback:
1: R_ut_parse(u)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
6: try(R_ut_parse(u), silent = TRUE)
7: ud_is_parseable("B")
8: fun(libname, pkgname)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(fun(libname, pkgname), error = identity)
13: runHook(".onLoad", env, package.lib, package)
14: loadNamespace(package, lib.loc)
15: doTryCatch(return(expr), name, parentenv, handler)
16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
17: tryCatchList(expr, classes, parentenv, handlers)
18: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)})
19: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
20: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
21: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))
22: doTryCatch(return(expr), name, parentenv, handler)
23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
24: tryCatchList(expr, classes, parentenv, handlers)
25: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
26: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))
27: tools:::.test_load_package("units", "/wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library/00LOCK-units/00new")
An irrecoverable exception occurred. R is aborting now ...
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
*** caught segfault ***
address 0x656d6d6f632e0074, cause 'memory not mapped'
Traceback:
1: R_ut_parse(u)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
6: try(R_ut_parse(u), silent = TRUE)
7: ud_is_parseable("B")
8: fun(libname, pkgname)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(fun(libname, pkgname), error = identity)
13: runHook(".onLoad", env, package.lib, package)
14: loadNamespace(package, lib.loc)
15: doTryCatch(return(expr), name, parentenv, handler)
16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
17: tryCatchList(expr, classes, parentenv, handlers)
18: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)})
19: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
20: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
21: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))
22: doTryCatch(return(expr), name, parentenv, handler)
23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
24: tryCatchList(expr, classes, parentenv, handlers)
25: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
26: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))
27: tools:::.test_load_package("units", "/wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library")
An irrecoverable exception occurred. R is aborting now ...
** testing if installed package keeps a record of temporary installation path
Warning in file(con, "rb") :
cannot open file '/tmp/RtmpaRkGDk/fileaa5317ba26b2': No such file or directory
Error in file(con, "rb") : cannot open the connection
* removing '/wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library/units'
*** Error code 1
Stop.
make: stopped in /usr/ports/math/R-cran-units