From nobody Fri Oct 27 19:33:36 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4SHCWh62pqz4ybQL for ; Fri, 27 Oct 2023 19:33:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4SHCWh1jFJz4DyH for ; Fri, 27 Oct 2023 19:33:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1698435216; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=mgO55pVNHRzMfL979lC60x/b+Eib2UBlZ7lravRvSr4=; b=QAqSwIwaX3wfcc4GXgysNuWwmBhI/G3e/6uI92RJfsBkR7QmRF2RJW3DksPkwlG+t0EvQ7 xAl3d2+Ufcc+HeQKCJu3PiIr14meGTYz2Qy+5U/rU6yDp5LfUElqUAslmjpHIEz+tXcZnf MPtHkEg6Zma2Z7/UfOo1J6lT/W+HJ1ns6IBSEYbZyfi6sptBYDBnvFX6OCulAkt4XaoQ8o 8AGbPtJCILMgXfAVks6FMe6IuWSVtgUaunhNK5gOclVFYpPw1ZDdDS/r/Ob/ounw3dBlFL mwUkHdryjhbnsscPPcLJfuTdUTTBsxlSxWYcFQSN2pFWykjRCoMquIAnjMeEWA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1698435216; a=rsa-sha256; cv=none; b=qgH5JXpljQRsGWKR8MdL6RGvsKil3xcss/+0ArgsnaHy+/ezcfxtUMuPMzJQORTYukMMvM LxTYNJcx//Fs3UACamA4XBkohW3uXTATJ80R+6VEbVk2MiNZnmY1WOyya179TXWcHqtSG8 lhETJDgjXSlyiKaCYbl5ampLw+gd69VyREbt3Z05HesUArypMZDos+rSf2qkuSiV/YRwOr uNCPANOSY8CnnLoqWP+6yBz+WYmX9M9yiPoN9VyjeXqaUV8ZCQnPGjqbCiotdil5j4SP17 LarQCiAs6gMGDfg6XWk3HO95H2fHd3yTbWIcokA3IeDhqCObWVjjhw+ORGn0LA== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4SHCWh0mNJzBt7 for ; Fri, 27 Oct 2023 19:33:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 5512 by ampere3.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere3.nyi.freebsd.org); Fri, 27 Oct 2023 19:33:36 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - 132releng-armv7-default][biology/mashmap] Failed for mashmap-3.1.1 in build Date: Fri, 27 Oct 2023 19:33:36 +0000 Message-Id: <653c1090.5512.2818c69f@ampere3.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/132releng-armv7-default/08943441f26e/logs/mashmap-3.1.1.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=132releng-armv7-default&build=08943441f26e Log: =>> Building biology/mashmap build started at Fri Oct 27 19:33:18 UTC 2023 port directory: /usr/ports/biology/mashmap package name: mashmap-3.1.1 building for: FreeBSD 132releng-armv7-default-job-08 13.2-RELEASE-p4 FreeBSD 13.2-RELEASE-p4 1302001 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1500000 Jail OSVERSION: 1302001 Job Id: 08 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p4 1302001 UNAME_r=13.2-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/132releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/132releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/132releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for mashmap-3.1.1: NATIVE=off: Use native optimization (-march=native) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mashmap/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mashmap/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mashmap/work/.cache HOME=/wrkdirs/usr/ports/biology/mashmap/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mashmap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mashmap/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mashmap/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mashmap/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mashmap/work/.cache HOME=/wrkdirs/usr/ports/biology/mashmap/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mashmap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mashmap/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/mashmap/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mashmap" EXAMPLESDIR="share/examples/mashmap" DATADIR="share/mashmap" WWWDIR="www/mashmap" ETCDIR="etc/mashmap" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mashmap DOCSDIR=/usr/local/share/doc/mashmap EXAMPLESDIR=/usr/local/share/examples/mashmap WWWDIR=/usr/local/www/mashmap ETCDIR=/usr/local/etc/mashmap --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=3 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv7-unknown-freebsd13.2-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv7-unknown-freebsd13.2-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv7-unknown-freebsd13.2-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.2-RELEASE-p4 OSREL=13.2 OSVERSION=1302001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> mashmap-3.1.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.7.pkg [132releng-armv7-default-job-08] Installing pkg-1.20.7... [132releng-armv7-default-job-08] Extracting pkg-1.20.7: .......... done ===> mashmap-3.1.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of mashmap-3.1.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by mashmap-3.1.1 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by mashmap-3.1.1 for building => SHA256 Checksum OK for marbl-MashMap-v3.1.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by mashmap-3.1.1 for building ===> Extracting for mashmap-3.1.1 => SHA256 Checksum OK for marbl-MashMap-v3.1.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for mashmap-3.1.1 =========================================================================== =================================================== ===> mashmap-3.1.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.26.1_3.pkg [132releng-armv7-default-job-08] Installing cmake-core-3.26.1_3... [132releng-armv7-default-job-08] `-- Installing expat-2.5.0... [132releng-armv7-default-job-08] `-- Extracting expat-2.5.0: .......... done [132releng-armv7-default-job-08] `-- Installing jsoncpp-1.9.5... [132releng-armv7-default-job-08] `-- Extracting jsoncpp-1.9.5: .......... done [132releng-armv7-default-job-08] `-- Installing libuv-1.46.0... [132releng-armv7-default-job-08] `-- Extracting libuv-1.46.0: .......... done [132releng-armv7-default-job-08] `-- Installing rhash-1.4.4... [132releng-armv7-default-job-08] | `-- Installing gettext-runtime-0.22_1... [132releng-armv7-default-job-08] | | `-- Installing indexinfo-0.3.1... [132releng-armv7-default-job-08] | | `-- Extracting indexinfo-0.3.1: .... done [132releng-armv7-default-job-08] | `-- Extracting gettext-runtime-0.22_1: .......... done [132releng-armv7-default-job-08] `-- Extracting rhash-1.4.4: .......... done [132releng-armv7-default-job-08] Extracting cmake-core-3.26.1_3: .......... done ===> mashmap-3.1.1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of mashmap-3.1.1 ===> mashmap-3.1.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [132releng-armv7-default-job-08] Installing ninja-1.11.1,2... [132releng-armv7-default-job-08] `-- Installing python39-3.9.18... [132releng-armv7-default-job-08] | `-- Installing libffi-3.4.4... [132releng-armv7-default-job-08] | `-- Extracting libffi-3.4.4: .......... done [132releng-armv7-default-job-08] | `-- Installing mpdecimal-2.5.1... [132releng-armv7-default-job-08] | `-- Extracting mpdecimal-2.5.1: .......... done [132releng-armv7-default-job-08] | `-- Installing readline-8.2.1... [132releng-armv7-default-job-08] | `-- Extracting readline-8.2.1: .......... done [132releng-armv7-default-job-08] `-- Extracting python39-3.9.18: .......... done [132releng-armv7-default-job-08] Extracting ninja-1.11.1,2: ........ done ===== Message from python39-3.9.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> mashmap-3.1.1 depends on executable: ninja - found ===> Returning to build of mashmap-3.1.1 =========================================================================== =================================================== ===> mashmap-3.1.1 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.7.1.pkg [132releng-armv7-default-job-08] Installing gsl-2.7.1... [132releng-armv7-default-job-08] Extracting gsl-2.7.1: .......... done ===> mashmap-3.1.1 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of mashmap-3.1.1 ===> mashmap-3.1.1 depends on shared library: libhts.so - not found ===> Installing existing package /packages/All/htslib-1.17.pkg [132releng-armv7-default-job-08] Installing htslib-1.17... [132releng-armv7-default-job-08] `-- Installing curl-8.3.0_1... [132releng-armv7-default-job-08] | `-- Installing libnghttp2-1.56.0... [132releng-armv7-default-job-08] | `-- Extracting libnghttp2-1.56.0: .......... done [132releng-armv7-default-job-08] | `-- Installing libpsl-0.21.2_3... [132releng-armv7-default-job-08] | | `-- Installing libidn2-2.3.4... [132releng-armv7-default-job-08] | | `-- Installing libunistring-1.1... [132releng-armv7-default-job-08] | | `-- Extracting libunistring-1.1: .......... done [132releng-armv7-default-job-08] | | `-- Extracting libidn2-2.3.4: .......... done [132releng-armv7-default-job-08] | `-- Extracting libpsl-0.21.2_3: .......... done [132releng-armv7-default-job-08] | `-- Installing libssh2-1.11.0,3... [132releng-armv7-default-job-08] | `-- Extracting libssh2-1.11.0,3: .......... done [132releng-armv7-default-job-08] `-- Extracting curl-8.3.0_1: .......... done [132releng-armv7-default-job-08] `-- Installing libdeflate-1.19... [132releng-armv7-default-job-08] `-- Extracting libdeflate-1.19: .......... done [132releng-armv7-default-job-08] Extracting htslib-1.17: .......... done ===> mashmap-3.1.1 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so) ===> Returning to build of mashmap-3.1.1 =========================================================================== =================================================== ===> Configuring for mashmap-3.1.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/mashmap/work/.build -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CMAKE_BUILD_TYPE: Release -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/mashmap/work/.build =========================================================================== =================================================== ===> Building for mashmap-3.1.1 [ 16% 3/6] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++17 -Wfatal-errors -MD -MT CMakeFiles/mashmap-align.dir/src/common/utils.cpp.o -MF CMakeFiles/mashmap-align.dir/src/common/utils.cpp.o.d -o CMakeFiles/mashmap-align.dir/src/common/utils.cpp.o -c /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common/utils.cpp [ 33% 4/6] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++17 -Wfatal-errors -MD -MT CMakeFiles/mashmap.dir/src/common/utils.cpp.o -MF CMakeFiles/mashmap.dir/src/common/utils.cpp.o.d -o CMakeFiles/mashmap.dir/src/common/utils.cpp.o -c /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common/utils.cpp [ 50% 4/6] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++17 -Wfatal-errors -MD -MT CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o -MF CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o.d -o CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o -c /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/map/mash_map.cpp FAILED: CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++17 -Wfatal-errors -MD -MT CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o -MF CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o.d -o CMakeFiles/mashmap.dir/src/map/mash_map.cpp.o -c /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/map/mash_map.cpp In file included from /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/map/mash_map.cpp:13: In file included from /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/map/include/map_parameters.hpp:14: /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common/ALeS.hpp:294:11: fatal error: unknown type name '__uint128_t' typedef __uint128_t uint128_t; ^ 1 error generated. [ 66% 4/6] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++17 -Wfatal-errors -MD -MT CMakeFiles/mashmap-align.dir/src/align/align.cpp.o -MF CMakeFiles/mashmap-align.dir/src/align/align.cpp.o.d -o CMakeFiles/mashmap-align.dir/src/align/align.cpp.o -c /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/align/align.cpp FAILED: CMakeFiles/mashmap-align.dir/src/align/align.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src -I/wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++17 -Wfatal-errors -MD -MT CMakeFiles/mashmap-align.dir/src/align/align.cpp.o -MF CMakeFiles/mashmap-align.dir/src/align/align.cpp.o.d -o CMakeFiles/mashmap-align.dir/src/align/align.cpp.o -c /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/align/align.cpp In file included from /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/align/align.cpp:18: In file included from /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/align/include/parseCmdArgs.hpp:16: In file included from /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/map/include/parseCmdArgs.hpp:16: In file included from /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/map/include/map_parameters.hpp:14: /wrkdirs/usr/ports/biology/mashmap/work/MashMap-3.1.1/src/common/ALeS.hpp:294:11: fatal error: unknown type name '__uint128_t' typedef __uint128_t uint128_t; ^ 1 error generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/mashmap