[package - main-i386-default][biology/gcta] Failed for gcta-1.26.0_4 in build
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Date: Sun, 08 Oct 2023 01:34:25 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/pde9b672bc747_s4640df1b0a/logs/gcta-1.26.0_4.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=pde9b672bc747_s4640df1b0a
Log:
=>> Building biology/gcta
build started at Sun Oct 8 01:32:55 UTC 2023
port directory: /usr/ports/biology/gcta
package name: gcta-1.26.0_4
building for: FreeBSD main-i386-default-job-09 15.0-CURRENT FreeBSD 15.0-CURRENT 1500001 i386
maintained by: jwb@FreeBSD.org
Makefile ident:
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Host OSVERSION: 1500000
Jail OSVERSION: 1500001
Job Id: 09
!!! Jail is newer than host. (Jail: 1500001, Host: 1500000) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> gcta-1.26.0_4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.7.pkg
[main-i386-default-job-09] Installing pkg-1.20.7...
[main-i386-default-job-09] Extracting pkg-1.20.7: .......... done
===> gcta-1.26.0_4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of gcta-1.26.0_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by gcta-1.26.0_4 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by gcta-1.26.0_4 for building
=> SHA256 Checksum OK for gcta_1.26.0_src.zip.
=> SHA256 Checksum OK for eigen-3.3.9.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by gcta-1.26.0_4 for building
===> Extracting for gcta-1.26.0_4
=> SHA256 Checksum OK for gcta_1.26.0_src.zip.
=> SHA256 Checksum OK for eigen-3.3.9.tar.gz.
Archive: /portdistfiles/gcta_1.26.0_src.zip
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/bivar_reml.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/cdflib.h
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/CommFunc.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/CommFunc.h
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/Copyright.txt
<snip>
^
joint_meta.cpp:766:12: note: in instantiation of member function 'Eigen::SimplicialLDLT<Eigen::SparseMatrix<double>, 1, Eigen::AMDOrdering<int>>::compute' requested here
solver.compute(B);
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
In file included from joint_meta.cpp:1:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Matrix<double, -1, 1, 0>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_inverse_op<double>, const Matrix<double, -1, 1, 0, -1, 1>>>' required here
: public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::Matrix<double, -1, 1, 0>, Eigen::Dense>' requested here
class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/DiagonalMatrix.h:230:20: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Matrix<double, -1, 1, 0>>' requested here
typedef typename DiagonalVectorType::Scalar Scalar;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/EigenBase.h:41:30: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
typedef typename internal::traits<Derived>::StorageKind StorageKind;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment_no_alias<Eigen::Matrix<double, -1, 1, 0>, Eigen::Solve<Eigen::SimplicialLDLT<Eigen::SparseMatrix<double>, 1, Eigen::AMDOrdering<int>>, Eigen::Matrix<double, -1, 1, 0>>, Eigen::internal::assign_op<double, double>>' requested here
call_assignment_no_alias(dst, src, func);
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment<Eigen::Matrix<double, -1, 1, 0>, Eigen::Solve<Eigen::SimplicialLDLT<Eigen::SparseMatrix<double>, 1, Eigen::AMDOrdering<int>>, Eigen::Matrix<double, -1, 1, 0>>, Eigen::internal::assign_op<double, double>>' requested here
call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen::internal::call_assignment<Eigen::Matrix<double, -1, 1, 0>, Eigen::Solve<Eigen::SimplicialLDLT<Eigen::SparseMatrix<double>, 1, Eigen::AMDOrdering<int>>, Eigen::Matrix<double, -1, 1, 0>>>' requested here
internal::call_assignment(this->derived(), other.derived());
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/Matrix.h:225:20: note: in instantiation of function template specialization 'Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0>>::_set<Eigen::Solve<Eigen::SimplicialLDLT<Eigen::SparseMatrix<double>, 1, Eigen::AMDOrdering<int>>, Eigen::Matrix<double, -1, 1, 0>>>' requested here
return Base::_set(other);
^
joint_meta.cpp:770:8: note: in instantiation of function template specialization 'Eigen::Matrix<double, -1, 1, 0>::operator=<Eigen::Solve<Eigen::SimplicialLDLT<Eigen::SparseMatrix<double>, 1, Eigen::AMDOrdering<int>>, Eigen::Matrix<double, -1, 1, 0>>>' requested here
bJ = solver.solve(Xty);
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
7 warnings generated.
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/local/include -c mlm_assoc.cpp
13 warnings generated.
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/local/include -c mkl.cpp
12 warnings generated.
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/local/include -c option.cpp
mkl.cpp:360:5: error: no matching function for call to 'dpotrf_'
dpotrf_(&uplo, &int_n, Vi_mkl, &int_n, &info);
^~~~~~~
/usr/local/include/lapack.h:13624:12: note: candidate function not viable: requires 6 arguments, but 5 were provided
lapack_int LAPACK_dpotrf_base(
^
/usr/local/include/lapack.h:13623:28: note: expanded from macro 'LAPACK_dpotrf_base'
#define LAPACK_dpotrf_base LAPACK_GLOBAL(dpotrf,DPOTRF)
^
/usr/local/include/lapacke_mangling.h:12:39: note: expanded from macro 'LAPACK_GLOBAL'
#define LAPACK_GLOBAL(lcname,UCNAME) lcname##_
^
<scratch space>:224:1: note: expanded from here
dpotrf_
^
mkl.cpp:372:9: error: no matching function for call to 'dpotri_'
dpotri_(&uplo, &int_n, Vi_mkl, &int_n, &info);
^~~~~~~
/usr/local/include/lapack.h:13752:6: note: candidate function not viable: requires 6 arguments, but 5 were provided
void LAPACK_dpotri_base(
^
/usr/local/include/lapack.h:13751:28: note: expanded from macro 'LAPACK_dpotri_base'
#define LAPACK_dpotri_base LAPACK_GLOBAL(dpotri,DPOTRI)
^
/usr/local/include/lapacke_mangling.h:12:39: note: expanded from macro 'LAPACK_GLOBAL'
#define LAPACK_GLOBAL(lcname,UCNAME) lcname##_
^
<scratch space>:232:1: note: expanded from here
dpotri_
^
In file included from mlm_assoc.cpp:13:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<Matrix<double, -1, 1, 0, -1, 1>>, const ArrayWrapper<const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>>>>' required here
: public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>, Eigen::Dense>' requested here
public CwiseBinaryOpImpl<
^
mlm_assoc.cpp:197:39: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>' requested here
if(!no_adj_covar) y_buf=_y.array()-(_X*_b).array(); // adjust phenotype for covariates
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
2 errors generated.
gmake[1]: *** [Makefile:72: mkl.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
In file included from mlm_assoc.cpp:13:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1, 0>>, const Eigen::Map<Eigen::Matrix<double, -1, 1, 0>, 1>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Matrix<double, -1, 1, 0, -1, 1>>, const Map<Matrix<double, -1, 1, 0, -1, 1>, 1, Stride<0, 0>>>>' required here
: public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1, 0>>, const Eigen::Map<Eigen::Matrix<double, -1, 1, 0>, 1>, Eigen::Dense>' requested here
public CwiseBinaryOpImpl<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/GeneralProduct.h:287:40: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1, 0>>, const Eigen::Map<Eigen::Matrix<double, -1, 1, 0>, 1>>' requested here
dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size());
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/ProductEvaluators.h:383:31: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
>::run(actual_lhs, actual_rhs, dst, alpha);
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment_no_alias<Eigen::Matrix<double, -1, 1, 0>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>, Eigen::internal::assign_op<double, double>>' requested here
call_assignment_no_alias(dst, src, func);
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment<Eigen::Matrix<double, -1, 1, 0>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>, Eigen::internal::assign_op<double, double>>' requested here
call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen::internal::call_assignment<Eigen::Matrix<double, -1, 1, 0>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>>' requested here
internal::call_assignment(this->derived(), other.derived());
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/Matrix.h:225:20: note: in instantiation of function template specialization 'Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0>>::_set<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>>' requested here
return Base::_set(other);
^
mlm_assoc.cpp:197:28: note: in instantiation of function template specialization 'Eigen::Matrix<double, -1, 1, 0>::operator=<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0>, Eigen::Matrix<double, -1, 1, 0>>>>>' requested here
if(!no_adj_covar) y_buf=_y.array()-(_X*_b).array(); // adjust phenotype for covariates
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
option.cpp:135:24: warning: ISO C++11 does not allow conversion from string literal to 'value_type' (aka 'char *') [-Wwritable-strings]
argv[option_num] = "gcta";
^
option.cpp:136:28: warning: ISO C++11 does not allow conversion from string literal to 'value_type' (aka 'char *') [-Wwritable-strings]
argv[option_num + 1] = "gcta";
^
2 warnings generated.
2 warnings generated.
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/gcta