[package - 140releng-armv7-quarterly][devel/py-pykdtree] Failed for py39-pykdtree-1.3.7.post0 in build
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Date: Fri, 17 Nov 2023 15:59:00 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/140releng-armv7-quarterly/a24e513f186f/logs/py39-pykdtree-1.3.7.post0.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=140releng-armv7-quarterly&build=a24e513f186f
Log:
=>> Building devel/py-pykdtree
build started at Fri Nov 17 15:58:49 UTC 2023
port directory: /usr/ports/devel/py-pykdtree
package name: py39-pykdtree-1.3.7.post0
building for: FreeBSD 140releng-armv7-quarterly-job-07 14.0-RC4 FreeBSD 14.0-RC4 1400097 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 649 Oct 5 01:01 /usr/ports/devel/py-pykdtree/Makefile
Ports top last git commit: a24e513f1
Ports top unclean checkout: no
Port dir last git commit: 46c5200e9
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e
Host OSVERSION: 1500000
Jail OSVERSION: 1400097
Job Id: 07
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sunpoet@FreeBSD.org
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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kqueues (-k) unlimited
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--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-pykdtree-1.3.7.post0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.8.pkg
[140releng-armv7-quarterly-job-07] Installing pkg-1.20.8...
[140releng-armv7-quarterly-job-07] Extracting pkg-1.20.8: .......... done
===> py39-pykdtree-1.3.7.post0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-pykdtree-1.3.7.post0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by py39-pykdtree-1.3.7.post0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by py39-pykdtree-1.3.7.post0 for building
=> SHA256 Checksum OK for pykdtree-1.3.7.post0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by py39-pykdtree-1.3.7.post0 for building
===> Extracting for py39-pykdtree-1.3.7.post0
=> SHA256 Checksum OK for pykdtree-1.3.7.post0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py39-pykdtree-1.3.7.post0
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-pykdtree-1.3.7.post0 depends on package: py39-numpy>=0,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.25.0_1,1.pkg
[140releng-armv7-quarterly-job-07] Installing py39-numpy-1.25.0_1,1...
[140releng-armv7-quarterly-job-07] `-- Installing gcc12-12.2.0_6...
[140releng-armv7-quarterly-job-07] | `-- Installing binutils-2.40_4,1...
[140releng-armv7-quarterly-job-07] | | `-- Installing gettext-runtime-0.22_1...
[140releng-armv7-quarterly-job-07] | | `-- Installing indexinfo-0.3.1...
[140releng-armv7-quarterly-job-07] | | `-- Extracting indexinfo-0.3.1: .... done
[140releng-armv7-quarterly-job-07] | | `-- Extracting gettext-runtime-0.22_1: .......... done
[140releng-armv7-quarterly-job-07] | | `-- Installing zstd-1.5.5...
[140releng-armv7-quarterly-job-07] | | `-- Installing liblz4-1.9.4,1...
[140releng-armv7-quarterly-job-07] | | `-- Extracting liblz4-1.9.4,1: .......... done
[140releng-armv7-quarterly-job-07] | | `-- Extracting zstd-1.5.5: .......... done
[140releng-armv7-quarterly-job-07] | `-- Extracting binutils-2.40_4,1: .......... done
[140releng-armv7-quarterly-job-07] | `-- Installing gmp-6.3.0...
[140releng-armv7-quarterly-job-07] | `-- Extracting gmp-6.3.0: .......... done
[140releng-armv7-quarterly-job-07] | `-- Installing mpc-1.3.1_1...
[140releng-armv7-quarterly-job-07] | | `-- Installing mpfr-4.2.1,1...
[140releng-armv7-quarterly-job-07] | | `-- Extracting mpfr-4.2.1,1: .......... done
[140releng-armv7-quarterly-job-07] | `-- Extracting mpc-1.3.1_1: ......... done
[140releng-armv7-quarterly-job-07] `-- Extracting gcc12-12.2.0_6: .......... done
[140releng-armv7-quarterly-job-07] `-- Installing openblas-0.3.20,2...
[140releng-armv7-quarterly-job-07] `-- Extracting openblas-0.3.20,2: .......... done
[140releng-armv7-quarterly-job-07] `-- Installing py39-setuptools-63.1.0_1...
[140releng-armv7-quarterly-job-07] | `-- Installing python39-3.9.18...
[140releng-armv7-quarterly-job-07] | | `-- Installing libffi-3.4.4...
[140releng-armv7-quarterly-job-07] | | `-- Extracting libffi-3.4.4: .......... done
[140releng-armv7-quarterly-job-07] | | `-- Installing mpdecimal-2.5.1...
[140releng-armv7-quarterly-job-07] | | `-- Extracting mpdecimal-2.5.1: .......... done
[140releng-armv7-quarterly-job-07] | | `-- Installing readline-8.2.1...
[140releng-armv7-quarterly-job-07] | | `-- Extracting readline-8.2.1: .......... done
[140releng-armv7-quarterly-job-07] | `-- Extracting python39-3.9.18: .......... done
[140releng-armv7-quarterly-job-07] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[140releng-armv7-quarterly-job-07] `-- Installing suitesparse-umfpack-6.2.0...
[140releng-armv7-quarterly-job-07] | `-- Installing suitesparse-amd-3.2.0...
[140releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-config-7.2.0...
[140releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-config-7.2.0: .......... done
[140releng-armv7-quarterly-job-07] | `-- Extracting suitesparse-amd-3.2.0: .......... done
[140releng-armv7-quarterly-job-07] | `-- Installing suitesparse-camd-3.2.0...
[140releng-armv7-quarterly-job-07] | `-- Extracting suitesparse-camd-3.2.0: .......... done
[140releng-armv7-quarterly-job-07] | `-- Installing suitesparse-ccolamd-3.2.0...
[140releng-armv7-quarterly-job-07] | `-- Extracting suitesparse-ccolamd-3.2.0: .......... done
[140releng-armv7-quarterly-job-07] | `-- Installing suitesparse-cholmod-4.2.0...
[140releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-colamd-3.2.0...
[140releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-colamd-3.2.0: .......... done
[140releng-armv7-quarterly-job-07] | `-- Extracting suitesparse-cholmod-4.2.0: .......... done
[140releng-armv7-quarterly-job-07] `-- Extracting suitesparse-umfpack-6.2.0: .......... done
[140releng-armv7-quarterly-job-07] Extracting py39-numpy-1.25.0_1,1: .......... done
=====
Message from gcc12-12.2.0_6:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> py39-pykdtree-1.3.7.post0 depends on package: py39-numpy>=0,1 - found
===> Returning to build of py39-pykdtree-1.3.7.post0
===> py39-pykdtree-1.3.7.post0 depends on package: py39-setuptools>=63.1.0 - found
===> py39-pykdtree-1.3.7.post0 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py39-pykdtree-1.3.7.post0
running config
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py39-pykdtree-1.3.7.post0
running build
running build_py
creating build
creating build/lib.freebsd-14.0-RC4-arm-cpython-39
creating build/lib.freebsd-14.0-RC4-arm-cpython-39/pykdtree
copying pykdtree/__init__.py -> build/lib.freebsd-14.0-RC4-arm-cpython-39/pykdtree
copying pykdtree/test_tree.py -> build/lib.freebsd-14.0-RC4-arm-cpython-39/pykdtree
running build_ext
Will use gomp for OpenMP.
Compiler: unix / OpenMP: gomp / OpenMP compile args: ['-fopenmp'] / OpenMP link args: ['-lgomp']
building 'pykdtree.kdtree' extension
creating build/temp.freebsd-14.0-RC4-arm-cpython-39
creating build/temp.freebsd-14.0-RC4-arm-cpython-39/pykdtree
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -c pykdtree/_kdtree_core.c -o build/temp.freebsd-14.0-RC4-arm-cpython-39/pykdtree/_kdtree_core.o -std=c99 -O3 -fopenmp
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -c pykdtree/kdtree.c -o build/temp.freebsd-14.0-RC4-arm-cpython-39/pykdtree/kdtree.o -std=c99 -O3 -fopenmp
In file included from pykdtree/kdtree.c:746:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929:
/usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
pykdtree/kdtree.c:756:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 warning and 1 error generated.
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1
Stop.
make: stopped in /usr/ports/devel/py-pykdtree