[package - main-armv7-default][devel/py-pykdtree] Failed for py39-pykdtree-1.3.9 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Mon, 13 Nov 2023 20:36:14 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p2a0323b27e39_s13a9745746/logs/py39-pykdtree-1.3.9.log
Build URL:      https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p2a0323b27e39_s13a9745746
Log:

=>> Building devel/py-pykdtree
build started at Mon Nov 13 20:35:58 UTC 2023
port directory: /usr/ports/devel/py-pykdtree
package name: py39-pykdtree-1.3.9
building for: FreeBSD main-armv7-default-job-08 15.0-CURRENT FreeBSD 15.0-CURRENT 1500003 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 793 Oct 19 01:02 /usr/ports/devel/py-pykdtree/Makefile
Ports top last git commit: 2a0323b27e3
Ports top unclean checkout: no
Port dir last git commit: 2b9e5e069d8
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e
Host OSVERSION: 1500000
Jail OSVERSION: 1500003
Job Id: 08




!!! Jail is newer than host. (Jail: 1500003, Host: 1500000) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-pykdtree-1.3.9 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.8.pkg
[main-armv7-default-job-08] Installing pkg-1.20.8...
[main-armv7-default-job-08] Extracting pkg-1.20.8: .......... done
===>   py39-pykdtree-1.3.9 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-pykdtree-1.3.9
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by py39-pykdtree-1.3.9 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by py39-pykdtree-1.3.9 for building
=> SHA256 Checksum OK for pykdtree-1.3.9.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by py39-pykdtree-1.3.9 for building
===>  Extracting for py39-pykdtree-1.3.9
=> SHA256 Checksum OK for pykdtree-1.3.9.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-pykdtree-1.3.9
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-pykdtree-1.3.9 depends on package: py39-numpy>=0,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.25.0_2,1.pkg
[main-armv7-default-job-08] Installing py39-numpy-1.25.0_2,1...
[main-armv7-default-job-08] `-- Installing gcc12-12.2.0_6...
[main-armv7-default-job-08] |   `-- Installing binutils-2.40_4,1...
[main-armv7-default-job-08] |   | `-- Installing gettext-runtime-0.22.3...
[main-armv7-default-job-08] |   |   `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-08] |   |   `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-08] |   | `-- Extracting gettext-runtime-0.22.3: .......... done
[main-armv7-default-job-08] |   | `-- Installing zstd-1.5.5...
[main-armv7-default-job-08] |   |   `-- Installing liblz4-1.9.4,1...
[main-armv7-default-job-08] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[main-armv7-default-job-08] |   | `-- Extracting zstd-1.5.5: .......... done
[main-armv7-default-job-08] |   `-- Extracting binutils-2.40_4,1: .......... done
[main-armv7-default-job-08] |   `-- Installing gmp-6.3.0...
[main-armv7-default-job-08] |   `-- Extracting gmp-6.3.0: .......... done
[main-armv7-default-job-08] |   `-- Installing mpc-1.3.1_1...
[main-armv7-default-job-08] |   | `-- Installing mpfr-4.2.1,1...
[main-armv7-default-job-08] |   | `-- Extracting mpfr-4.2.1,1: .......... done
[main-armv7-default-job-08] |   `-- Extracting mpc-1.3.1_1: ......... done
[main-armv7-default-job-08] `-- Extracting gcc12-12.2.0_6: .......... done
[main-armv7-default-job-08] `-- Installing openblas-0.3.20,2...
[main-armv7-default-job-08] `-- Extracting openblas-0.3.20,2: .......... done
[main-armv7-default-job-08] `-- Installing py39-setuptools-63.1.0_1...
[main-armv7-default-job-08] |   `-- Installing python39-3.9.18...
[main-armv7-default-job-08] |   | `-- Installing libffi-3.4.4...
[main-armv7-default-job-08] |   | `-- Extracting libffi-3.4.4: .......... done
[main-armv7-default-job-08] |   | `-- Installing mpdecimal-2.5.1...
[main-armv7-default-job-08] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[main-armv7-default-job-08] |   | `-- Installing readline-8.2.1...
[main-armv7-default-job-08] |   | `-- Extracting readline-8.2.1: .......... done
[main-armv7-default-job-08] |   `-- Extracting python39-3.9.18: .......... done
[main-armv7-default-job-08] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[main-armv7-default-job-08] `-- Installing suitesparse-umfpack-6.2.2...
[main-armv7-default-job-08] |   `-- Installing suitesparse-amd-3.2.1...
[main-armv7-default-job-08] |   | `-- Installing suitesparse-config-7.3.0...
[main-armv7-default-job-08] |   | `-- Extracting suitesparse-config-7.3.0: .......... done
[main-armv7-default-job-08] |   `-- Extracting suitesparse-amd-3.2.1: .......... done
[main-armv7-default-job-08] |   `-- Installing suitesparse-camd-3.2.1...
[main-armv7-default-job-08] |   `-- Extracting suitesparse-camd-3.2.1: .......... done
[main-armv7-default-job-08] |   `-- Installing suitesparse-ccolamd-3.2.1...
[main-armv7-default-job-08] |   `-- Extracting suitesparse-ccolamd-3.2.1: .......... done
[main-armv7-default-job-08] |   `-- Installing suitesparse-cholmod-5.0.0...
[main-armv7-default-job-08] |   | `-- Installing suitesparse-colamd-3.2.1...
[main-armv7-default-job-08] |   | `-- Extracting suitesparse-colamd-3.2.1: .......... done
[main-armv7-default-job-08] |   `-- Extracting suitesparse-cholmod-5.0.0: .......... done
[main-armv7-default-job-08] `-- Extracting suitesparse-umfpack-6.2.2: .......... done
[main-armv7-default-job-08] Extracting py39-numpy-1.25.0_2,1: .......... done
=====
Message from gcc12-12.2.0_6:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   py39-pykdtree-1.3.9 depends on package: py39-numpy>=0,1 - found
===>   Returning to build of py39-pykdtree-1.3.9
===>   py39-pykdtree-1.3.9 depends on package: py39-setuptools>=0 - found
===>   py39-pykdtree-1.3.9 depends on package: py39-wheel>=0 - not found
===>   Installing existing package /packages/All/py39-wheel-0.41.3.pkg
[main-armv7-default-job-08] Installing py39-wheel-0.41.3...
[main-armv7-default-job-08] Extracting py39-wheel-0.41.3: .......... done
===>   py39-pykdtree-1.3.9 depends on package: py39-wheel>=0 - found
===>   Returning to build of py39-pykdtree-1.3.9
===>   py39-pykdtree-1.3.9 depends on executable: cython-3.9 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.36.pkg
[main-armv7-default-job-08] Installing py39-cython-0.29.36...
[main-armv7-default-job-08] Extracting py39-cython-0.29.36: .......... done
===>   py39-pykdtree-1.3.9 depends on executable: cython-3.9 - found
===>   Returning to build of py39-pykdtree-1.3.9
===>   py39-pykdtree-1.3.9 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-pykdtree-1.3.9 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-pykdtree-1.3.9
running config
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py39-pykdtree-1.3.9
running build
running build_py
creating build
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39/pykdtree
copying pykdtree/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/pykdtree
copying pykdtree/test_tree.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/pykdtree
running build_ext
Will use gomp for OpenMP.
Compiler: unix / OpenMP: gomp / OpenMP compile args: ['-fopenmp'] / OpenMP link args: ['-lgomp']
building 'pykdtree.kdtree' extension
creating build/temp.freebsd-15.0-CURRENT-arm-cpython-39
creating build/temp.freebsd-15.0-CURRENT-arm-cpython-39/pykdtree
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c pykdtree/_kdtree_core.c -o build/temp.freebsd-15.0-CURRENT-arm-cpython-39/pykdtree/_kdtree_core.o -std=c99 -O3 -fopenmp
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c pykdtree/kdtree.c -o build/temp.freebsd-15.0-CURRENT-arm-cpython-39/pykdtree/kdtree.o -std=c99 -O3 -fopenmp
In file included from pykdtree/kdtree.c:1177:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929:
/usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
pykdtree/kdtree.c:1184:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 warning and 1 error generated.
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1

Stop.
make: stopped in /usr/ports/devel/py-pykdtree