[package - 140releng-amd64-default][science/pastix] Failed for pastix-6.3.0 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 12 Nov 2023 02:50:58 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     thierry@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy12/data/140releng-amd64-default/d5268d5f7157/logs/pastix-6.3.0.log
Build URL:      https://pkg-status.freebsd.org/beefy12/build.html?mastername=140releng-amd64-default&build=d5268d5f7157
Log:

=>> Building science/pastix
build started at Sun Nov 12 02:48:52 UTC 2023
port directory: /usr/ports/science/pastix
package name: pastix-6.3.0
building for: FreeBSD 140releng-amd64-default-job-01 14.0-RC4 FreeBSD 14.0-RC4 1400097 amd64
maintained by: thierry@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 1433 Aug 26 01:01 /usr/ports/science/pastix/Makefile
Ports top last git commit: d5268d5f71
Ports top unclean checkout: no
Port dir last git commit: 157c391cc1
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e
Host OSVERSION: 1500000
Jail OSVERSION: 1400097
Job Id: 01

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---Begin OPTIONS List---
===> The following configuration options are available for pastix-6.3.0:
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
thierry@FreeBSD.org
--End MAINTAINER--

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--PLIST_SUB--
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
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####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   pastix-6.3.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.8.pkg
[140releng-amd64-default-job-01] Installing pkg-1.20.8...
[140releng-amd64-default-job-01] Extracting pkg-1.20.8: .......... done
===>   pastix-6.3.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pastix-6.3.0
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by pastix-6.3.0 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by pastix-6.3.0 for building
=> SHA256 Checksum OK for pastix-6.3.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by pastix-6.3.0 for building
===>  Extracting for pastix-6.3.0
=> SHA256 Checksum OK for pastix-6.3.0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for pastix-6.3.0
===>  Applying FreeBSD patches for pastix-6.3.0 from /usr/ports/science/pastix/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   pastix-6.3.0 depends on executable: bash - not found
===>   Installing existing package /packages/All/bash-5.2.15.pkg
[140releng-amd64-default-job-01] Installing bash-5.2.15...
[140releng-amd64-default-job-01] `-- Installing gettext-runtime-0.22.3...
[140releng-amd64-default-job-01] |   `-- Installing indexinfo-0.3.1...
[140releng-amd64-default-job-01] |   `-- Extracting indexinfo-0.3.1: .... done
[140releng-amd64-default-job-01] `-- Extracting gettext-runtime-0.22.3: .......... done
[140releng-amd64-default-job-01] `-- Installing readline-8.2.1...
[140releng-amd64-default-job-01] `-- Extracting readline-8.2.1: .......... done
[140releng-amd64-default-job-01] Extracting bash-5.2.15: .......... done
===>   pastix-6.3.0 depends on executable: bash - found
===>   Returning to build of pastix-6.3.0
===>   pastix-6.3.0 depends on package: py39-numpy>=1.16,1<1.26,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.25.0_2,1.pkg
[140releng-amd64-default-job-01] Installing py39-numpy-1.25.0_2,1...
[140releng-amd64-default-job-01] `-- Installing gcc12-12.2.0_6...
[140releng-amd64-default-job-01] |   `-- Installing binutils-2.40_4,1...
[140releng-amd64-default-job-01] |   | `-- Installing zstd-1.5.5...
[140releng-amd64-default-job-01] |   |   `-- Installing liblz4-1.9.4,1...
[140releng-amd64-default-job-01] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[140releng-amd64-default-job-01] |   | `-- Extracting zstd-1.5.5: .......... done
[140releng-amd64-default-job-01] |   `-- Extracting binutils-2.40_4,1: .......... done
[140releng-amd64-default-job-01] |   `-- Installing gmp-6.3.0...
[140releng-amd64-default-job-01] |   `-- Extracting gmp-6.3.0: .......... done
<snip>
[ 90%] Building C object CMakeFiles/pastix.dir/common/isched_hwloc.c.o
/usr/bin/cc -Dpastix_EXPORTS -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -isystem /usr/local/include -isystem /usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/pastix.dir/common/isched_hwloc.c.o -MF CMakeFiles/pastix.dir/common/isched_hwloc.c.o.d -o CMakeFiles/pastix.dir
/common/isched_hwloc.c.o -c /wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common/isched_hwloc.c
--- CMakeFiles/pastix.dir/common/s_integer.c.o ---
[ 90%] Building C object CMakeFiles/pastix.dir/common/s_integer.c.o
/usr/bin/cc -Dpastix_EXPORTS -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -isystem /usr/local/include -isystem /usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -pthread -DPRECISION_s -UPRECISION_p -UPRECISION_d -UPRECISION_c -UPRECISION_z -MD -MT CMakeFiles/pastix.dir/common/s_integer.c.o -MF CMake
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--- CMakeFiles/pastix.dir/bcsc/bcsc_sinit.c.o ---
[ 90%] Building C object CMakeFiles/pastix.dir/bcsc/bcsc_sinit.c.o
/usr/bin/cc -Dpastix_EXPORTS -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -isystem /usr/local/include -isystem /usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -pthread -DPRECISION_s -UPRECISION_p -UPRECISION_d -UPRECISION_c -UPRECISION_z -MD -MT CMakeFiles/pastix.dir/bcsc/bcsc_sinit.c.o -MF CMakeF
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--- CMakeFiles/pastix.dir/bcsc/bcsc_snorm.c.o ---
[ 90%] Building C object CMakeFiles/pastix.dir/bcsc/bcsc_snorm.c.o
/usr/bin/cc -Dpastix_EXPORTS -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -isystem /usr/local/include -isystem /usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -pthread -DPRECISION_s -UPRECISION_p -UPRECISION_d -UPRECISION_c -UPRECISION_z -MD -MT CMakeFiles/pastix.dir/bcsc/bcsc_snorm.c.o -MF CMakeF
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--- CMakeFiles/pastix.dir/bcsc/bcsc_sspmv.c.o ---
[ 90%] Building C object CMakeFiles/pastix.dir/bcsc/bcsc_sspmv.c.o
/usr/bin/cc -Dpastix_EXPORTS -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -isystem /usr/local/include -isystem /usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -pthread -DPRECISION_s -UPRECISION_p -UPRECISION_d -UPRECISION_c -UPRECISION_z -MD -MT CMakeFiles/pastix.dir/bcsc/bcsc_sspmv.c.o -MF CMakeF
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--- CMakeFiles/pastix.dir/bcsc/bvec_scompute.c.o ---
[ 91%] Building C object CMakeFiles/pastix.dir/bcsc/bvec_scompute.c.o
/usr/bin/cc -Dpastix_EXPORTS -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/common -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -isystem /usr/local/include -isystem /usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -pthread -DPRECISION_s -UPRECISION_p -UPRECISION_d -UPRECISION_c -UPRECISION_z -MD -MT CMakeFiles/pastix.dir/bcsc/bvec_scompute.c.o -MF CMa
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cd /wrkdirs/usr/ports/science/pastix/work/.build/example && /usr/bin/cc  -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIE -MD -MT example/CMakeFiles/dump_rank.dir/dump_rank.c.o -MF CMakeFiles/dump_rank.dir/dump_rank.c.o.d -o CMakeFiles/dump_rank.dir/dump_rank.c.o -c /wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/example/dump_rank.c
--- example/CMakeFiles/pastix_benchmark.dir/all ---
cd /wrkdirs/usr/ports/science/pastix/work/.build/example && /usr/bin/cc  -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0 -I/wrkdirs/usr/ports/science/pastix/work/.build -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/include -I/wrkdirs/usr/ports/science/pastix/work/.build/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/spm/include -I/wrkdirs/usr/ports/science/pastix/work/.build/spm/include -I/wrkdirs/usr/ports/science/pastix/work/pastix-6.3.0/kernels -I/wrkdirs/usr/ports/science/pastix/work/.build/kernels -isystem /usr/local/include/lapacke -isystem /usr/local/include/cblas -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIE -MD -MT example/CMakeFiles/pastix_benchmark.dir/pastix_benchmark.c.o -MF CMakeFiles/pastix_benchmark.dir/pastix_benchmark.c.o.d -o CMakeFiles/pastix_benchmark.dir/pastix_benchmark.c.o -c /wrkdirs/usr/ports/science/pastix
/work/pastix-6.3.0/example/pastix_benchmark.c
--- example/pastix_benchmark ---
--- example/CMakeFiles/ordering_grid.dir/all ---
--- example/ordering_grid ---
--- example/CMakeFiles/pastix_benchmark.dir/all ---
[ 92%] Linking C executable pastix_benchmark
cd /wrkdirs/usr/ports/science/pastix/work/.build/example && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pastix_benchmark.dir/link.txt --verbose=1
--- example/CMakeFiles/ordering_grid.dir/all ---
[ 92%] Linking C executable ordering_grid
cd /wrkdirs/usr/ports/science/pastix/work/.build/example && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ordering_grid.dir/link.txt --verbose=1
--- example/CMakeFiles/pastix_benchmark.dir/all ---
/usr/bin/cc  -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG  -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc12  -L/usr/local/lib/gcc12 -fstack-protector-strong CMakeFiles/pastix_benchmark.dir/pastix_benchmark.c.o -o pastix_benchmark  -Wl,-rpath,/wrkdirs/usr/ports/science/pastix/work/.build:/wrkdirs/usr/ports/science/pastix/work/.build/kernels:/wrkdirs/usr/ports/science/pastix/work/.build/spm/src ../libpastix.so.6.3.0 ../kernels/libpastix_kernels.so /usr/local/lib/libopenblas.so ../spm/src/libspm.so.1.2.0 
--- example/CMakeFiles/ordering_grid.dir/all ---
/usr/bin/cc  -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -mcx16 -Drestrict= -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG  -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc12  -L/usr/local/lib/gcc12 -fstack-protector-strong CMakeFiles/ordering_grid.dir/ordering_grid.c.o -o ordering_grid  -Wl,-rpath,/wrkdirs/usr/ports/science/pastix/work/.build:/wrkdirs/usr/ports/science/pastix/work/.build/kernels:/wrkdirs/usr/ports/science/pastix/work/.build/spm/src ../libpastix.so.6.3.0 ../kernels/libpastix_kernels.so /usr/local/lib/libopenblas.so ../spm/src/libspm.so.1.2.0 
ld: error: undefined reference due to --no-allow-shlib-undefined: cabs
>>> referenced by ../kernels/libpastix_kernels.so

ld: error: undefined reference due to --no-allow-shlib-undefined: cabsf
>>> referenced by ../kernels/libpastix_kernels.so

ld: error: undefined reference due to --no-allow-shlib-undefined: csqrt
>>> referenced by ../kernels/libpastix_kernels.so

ld: error: undefined reference due to --no-allow-shlib-undefined: csqrtf
>>> referenced by ../kernels/libpastix_kernels.so
--- example/CMakeFiles/pastix_benchmark.dir/all ---
ld: error: undefined reference due to --no-allow-shlib-undefined: cabs
>>> referenced by ../kernels/libpastix_kernels.so

ld: error: undefined reference due to --no-allow-shlib-undefined: cabsf
>>> referenced by ../kernels/libpastix_kernels.so

ld: error: undefined reference due to --no-allow-shlib-undefined: csqrt
>>> referenced by ../kernels/libpastix_kernels.so

ld: error: undefined reference due to --no-allow-shlib-undefined: csqrtf
>>> referenced by ../kernels/libpastix_kernels.so
--- example/CMakeFiles/ordering_grid.dir/all ---
cc: error: linker command failed with exit code 1 (use -v to see invocation)
--- example/CMakeFiles/pastix_benchmark.dir/all ---
cc: error: linker command failed with exit code 1 (use -v to see invocation)
--- example/CMakeFiles/ordering_grid.dir/all ---
*** [example/ordering_grid] Error code 1

make[3]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
--- example/CMakeFiles/pastix_benchmark.dir/all ---
*** [example/pastix_benchmark] Error code 1

make[3]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
1 error

make[3]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
--- example/CMakeFiles/ordering_grid.dir/all ---
1 error

make[3]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
--- example/CMakeFiles/pastix_benchmark.dir/all ---
*** [example/CMakeFiles/pastix_benchmark.dir/all] Error code 2

make[2]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
--- example/CMakeFiles/ordering_grid.dir/all ---
*** [example/CMakeFiles/ordering_grid.dir/all] Error code 2

make[2]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
--- example/CMakeFiles/dump_rank.dir/all ---
*** [example/CMakeFiles/dump_rank.dir/all] Error code 6

make[2]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
3 errors

make[2]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
*** [all] Error code 2

make[1]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
1 error

make[1]: stopped in /wrkdirs/usr/ports/science/pastix/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/pastix