[package - 132amd64-default][science/ghemical] Failed for ghemical-3.0.0_25 in package
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Date: Sat, 11 Nov 2023 11:56:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/132amd64-default/dd561896dcee/logs/ghemical-3.0.0_25.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=132amd64-default&build=dd561896dcee
Log:
=>> Building science/ghemical
build started at Sat Nov 11 11:54:04 UTC 2023
port directory: /usr/ports/science/ghemical
package name: ghemical-3.0.0_25
building for: FreeBSD 132amd64-default-job-09 13.2-RELEASE-p5 FreeBSD 13.2-RELEASE-p5 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1546 Apr 25 2023 /usr/ports/science/ghemical/Makefile
Ports top last git commit: dd561896dce
Ports top unclean checkout: no
Port dir last git commit: 8d3e020ed03
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e
Host OSVERSION: 1500000
Jail OSVERSION: 1302001
Job Id: 09
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1302001
UNAME_v=FreeBSD 13.2-RELEASE-p5
UNAME_r=13.2-RELEASE-p5
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.3.0-1251-ge8a0e12e
MASTERMNT=/usr/local/poudriere/data/.m/132amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/132amd64-default/09/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=132amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/132amd64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.3.0-1251-ge8a0e12e
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-gtk --enable-threads --disable-openbabel --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/ghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/ghemical/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/ghemical/work/.cache HOME=/wrkdirs/usr/ports/science/ghemical/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/ghemical/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/ghemical/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP=
"/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/ghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/ghemical/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/ghemical/work/.cache HOME=/wrkdirs/usr/ports/science/ghemical/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/ghemical/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/ghemical/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP=
"/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-c++11-narrowing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
GHEMICAL_VERSION="3.0.0" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ghemical" EXAMPLESDIR="share/examples/ghemical" DATADIR="share/ghemical" WWWDIR="www/ghemical" ETCDIR="etc/ghemical"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ghemical DOCSDIR=/usr/local/share/doc/ghemical EXAMPLESDIR=/usr/local/share/examples/ghemical WWWDIR=/usr/local/www/ghemical ETCDIR=/usr/local/etc/ghemical
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ghemical-3.0.0_25 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.8.pkg
[132amd64-default-job-09] Installing pkg-1.20.8...
[132amd64-default-job-09] Extracting pkg-1.20.8: .......... done
===> ghemical-3.0.0_25 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ghemical-3.0.0_25
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by ghemical-3.0.0_25 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by ghemical-3.0.0_25 for building
=> SHA256 Checksum OK for ghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by ghemical-3.0.0_25 for building
===> Extracting for ghemical-3.0.0_25
=> SHA256 Checksum OK for ghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ghemical-3.0.0_25
===> Applying FreeBSD patches for ghemical-3.0.0_25 from /usr/ports/science/ghemical/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ghemical-3.0.0_25 depends on executable: gfortran12 - not found
===> Installing existing package /packages/All/gcc12-12.2.0_6.pkg
[132amd64-default-job-09] Installing gcc12-12.2.0_6...
[132amd64-default-job-09] `-- Installing binutils-2.40_4,1...
[132amd64-default-job-09] | `-- Installing gettext-runtime-0.22.3...
[132amd64-default-job-09] | | `-- Installing indexinfo-0.3.1...
[132amd64-default-job-09] | | `-- Extracting indexinfo-0.3.1: .... done
[132amd64-default-job-09] | `-- Extracting gettext-runtime-0.22.3: .......... done
[132amd64-default-job-09] | `-- Installing zstd-1.5.5...
[132amd64-default-job-09] | | `-- Installing liblz4-1.9.4,1...
[132amd64-default-job-09] | | `-- Extracting liblz4-1.9.4,1: .......... done
[132amd64-default-job-09] | `-- Extracting zstd-1.5.5: .......... done
[132amd64-default-job-09] `-- Extracting binutils-2.40_4,1: .......... done
[132amd64-default-job-09] `-- Installing gmp-6.3.0...
[132amd64-default-job-09] `-- Extracting gmp-6.3.0: .......... done
[132amd64-default-job-09] `-- Installing mpc-1.3.1_1...
[132amd64-default-job-09] | `-- Installing mpfr-4.2.1,1...
[132amd64-default-job-09] | `-- Extracting mpfr-4.2.1,1: .......... done
[132amd64-default-job-09] `-- Extracting mpc-1.3.1_1: ......... done
[132amd64-default-job-09] Extracting gcc12-12.2.0_6: .......... done
=====
Message from gcc12-12.2.0_6:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
<snip>
===> Installing existing package /packages/All/xdg-utils-1.1.3_2.pkg
[132amd64-default-job-09] Installing xdg-utils-1.1.3_2...
[132amd64-default-job-09] `-- Installing xprop-1.2.6...
[132amd64-default-job-09] `-- Extracting xprop-1.2.6: ..... done
[132amd64-default-job-09] `-- Installing xset-1.2.5...
[132amd64-default-job-09] `-- Extracting xset-1.2.5: ..... done
[132amd64-default-job-09] Extracting xdg-utils-1.1.3_2: .......... done
===> ghemical-3.0.0_25 depends on executable: xdg-open - found
===> Returning to build of ghemical-3.0.0_25
===> ghemical-3.0.0_25 depends on executable: gfortran12 - found
===> ghemical-3.0.0_25 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===========================================================================
=======================<phase: stage >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Staging for ghemical-3.0.0_25
===> Generating temporary packing list
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0'
Making install in docs
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs'
Making install in user-docs
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs'
Making install in images
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs/images'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs/images'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/user-docs/images" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/user-docs/images"
install -m 0644 2atoms_unbonded.png aa_builder_ci.png aa_builder_menu.png aa_builder_note.png aa_builder_w_h.png aa_builder_wo_h.png add_hydrogens_select.png add_hydrogens.png change_bond_dialog.png ci_plane.png clipping1.png clipping2.png cyclohexane_optimized.png cyclohexane_unoptimized.png cyclohexane1.png cyclohexane2.png energy_vs_torsion1.png energy_vs_torsion2.png energy_vs_torsion3.png energy_vs_torsion4.png enlevdiag.png esp-plane_mm.png esp-plane_qm.png esp-plane_select_obj.png esp-plane_select.png formula_select.png formula.png geometry_op_dialog.png geometry_optimization_select.png labels_menu.png mainmenu.png maintools.png md_dialog.png modal.png notebook.png optimized_ethane.png remove_hydrogens.png ribbon.png sequence_builder.png setup_select.png '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/user-docs/images'
install -m 0644 setup1.png setup2.png toplevel.png traj_dialog.png using_mm_01.png using_mm_02.png using_mm_03.png using_mm_04.png using_mm_05.png using_mm_06.png using_mm_07.png using_mm_08.png using_mm_09.png using_mm_10.png using_mm_11.png window.png '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/user-docs/images'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs/images'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs/images'
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/user-docs" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/user-docs"
install -m 0644 documentation.css aa_table.html add_hydrogens.html conf_search_tools.html energy_vs_torsion.html filetypes.html formula.html geometry_optimization.html import_types.html index.html introduction.html labels.html MD_viewer.html MD.html measure.html perspective.html references.html ribbon.html sequence_builder.html setup_dialog.html using_mm.html using_qm.html using_sf.html visualization.html '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/user-docs'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs/user-docs'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs'
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs'
gmake[4]: Nothing to be done for 'install-exec-am'.
gmake[4]: Nothing to be done for 'install-data-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/docs'
Making install in examples
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples'
Making install in TSS
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS'
Making install in carbocation_rearrangement_hydride_shift
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_hydride_shift'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_hydride_shift'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/carbocation_rearrangement_hydride_shift" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/carbocation_rearrangement_hydride_shift"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/carbocation_rearrangement_hydride_shift'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_hydride_shift'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_hydride_shift'
Making install in carbocation_rearrangement_methide_shift
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_methide_shift'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_methide_shift'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/carbocation_rearrangement_methide_shift" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/carbocation_rearrangement_methide_shift"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/carbocation_rearrangement_methide_shift'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_methide_shift'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/carbocation_rearrangement_methide_shift'
Making install in cycloaddition_Diels-Alder
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/cycloaddition_Diels-Alder'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/cycloaddition_Diels-Alder'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/cycloaddition_Diels-Alder" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/cycloaddition_Diels-Alder"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/cycloaddition_Diels-Alder'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/cycloaddition_Diels-Alder'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/cycloaddition_Diels-Alder'
Making install in E2-reaction
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/E2-reaction'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/E2-reaction'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/E2-reaction" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/E2-reaction"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/E2-reaction'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/E2-reaction'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/E2-reaction'
Making install in sigmatropic_rearrangement_Cope
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/sigmatropic_rearrangement_Cope'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/sigmatropic_rearrangement_Cope'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/sigmatropic_rearrangement_Cope" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/sigmatropic_rearrangement_Cope"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/sigmatropic_rearrangement_Cope'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/sigmatropic_rearrangement_Cope'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/sigmatropic_rearrangement_Cope'
Making install in SN2-reaction
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/SN2-reaction'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/SN2-reaction'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/SN2-reaction" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/SN2-reaction"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/SN2-reaction'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/SN2-reaction'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/SN2-reaction'
Making install in tautomeric_shift_keto_enol
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/tautomeric_shift_keto_enol'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/tautomeric_shift_keto_enol'
gmake[5]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples/transition_state_search/tautomeric_shift_keto_enol" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/tautomeric_shift_keto_enol"
install -m 0644 products.gpr reactants.gpr ts.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples/transition_state_search/tautomeric_shift_keto_enol'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/tautomeric_shift_keto_enol'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS/tautomeric_shift_keto_enol'
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS'
gmake[5]: Nothing to be done for 'install-exec-am'.
gmake[5]: Nothing to be done for 'install-data-am'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples/TSS'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples'
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples'
gmake[4]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/examples" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples"
install -m 0644 2-chlorobutane.gpr 3-phenylpropanal.gpr PeriodicTable.gpr acetylsalicylic_acid.gpr alpha-pinene.gpr bromobenzene.gpr camphor.gpr cinnamaldehyde.gpr cis-2-pentene.gpr cyclohexane.gpr dna_AGTC.gpr naphtalene.gpr rna_aguc.gpr '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/examples'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/examples'
Making install in src
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src'
Making install in res_gtk
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src/res_gtk'
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src/res_gtk'
gmake[4]: Nothing to be done for 'install-exec-am'.
test -z "/usr/local/share/ghemical/3.0.0/glade" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/glade"
install -m 0644 gtk_file_export_dialog.glade gtk_file_import_dialog.glade gtk_geomopt_dialog.glade gtk_moldyn_dialog.glade gtk_progress_dialog.glade gtk_setup_dialog.glade gtk_stereo_dialog.glade gtk_trajview_dialog.glade '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/glade'
test -z "/usr/local/share/ghemical/3.0.0/pixmaps" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/pixmaps"
install -m 0644 ghemical.png '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/pixmaps'
test -z "/usr/local/share/ghemical/3.0.0/pixmaps" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/pixmaps"
install -m 0644 angle.xpm bondtype.xpm bond.xpm chain.xpm clipping.xpm dihedral.xpm distance.xpm draw.xpm element.xpm erase.xpm invert.xpm measure.xpm molecule.xpm orbit_xy.xpm orbit_z.xpm residue.xpm rotate_xy.xpm rotate_z.xpm select.xpm setup.xpm transl_xy.xpm transl_z.xpm zoom.xpm '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/ghemical/3.0.0/pixmaps'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src/res_gtk'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src/res_gtk'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src'
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src'
test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/bin"
/bin/sh ../libtool --mode=install install -s -m 555 ghemical '/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/bin'
libtool: install: install -m 555 -s ghemical /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/bin/ghemical
gmake[4]: Nothing to be done for 'install-data-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src'
Making install in po
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/po'
linguas="de fi mk pt_BR ru sq "; \
for lang in $linguas; do \
dir=/wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/$lang/LC_MESSAGES; \
/bin/sh /wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/install-sh -d $dir; \
if test -r $lang.gmo; then \
install -m 0644 $lang.gmo $dir/ghemical.mo; \
echo "installing $lang.gmo as $dir/ghemical.mo"; \
else \
install -m 0644 ./$lang.gmo $dir/ghemical.mo; \
echo "installing ./$lang.gmo as" \
"$dir/ghemical.mo"; \
fi; \
if test -r $lang.gmo.m; then \
install -m 0644 $lang.gmo.m $dir/ghemical.mo.m; \
echo "installing $lang.gmo.m as $dir/ghemical.mo.m"; \
else \
if test -r ./$lang.gmo.m ; then \
install -m 0644 ./$lang.gmo.m \
$dir/ghemical.mo.m; \
echo "installing ./$lang.gmo.m as" \
"$dir/ghemical.mo.m"; \
else \
true; \
fi; \
fi; \
done
installing de.gmo as /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/de/LC_MESSAGES/ghemical.mo
installing fi.gmo as /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/fi/LC_MESSAGES/ghemical.mo
installing mk.gmo as /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/mk/LC_MESSAGES/ghemical.mo
installing pt_BR.gmo as /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/pt_BR/LC_MESSAGES/ghemical.mo
installing ru.gmo as /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/ru/LC_MESSAGES/ghemical.mo
installing sq.gmo as /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/lib/locale/sq/LC_MESSAGES/ghemical.mo
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/po'
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0'
gmake[3]: Nothing to be done for 'install-exec-am'.
gmake[3]: Nothing to be done for 'install-data-am'.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0'
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0'
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package >============================
===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2023-11-11T11:54:04+0000' 'PKG_NOTE_ports_top_git_hash=dd561896dce' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=8d3e020ed03' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.3.0-1251-ge8a0e12e' NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building package for ghemical-3.0.0_25
pkg-static: Unable to access file /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/locale/de/LC_MESSAGES/ghemical.mo:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/locale/fi/LC_MESSAGES/ghemical.mo:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/locale/mk/LC_MESSAGES/ghemical.mo:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/locale/pt_BR/LC_MESSAGES/ghemical.mo:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/locale/ru/LC_MESSAGES/ghemical.mo:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/ghemical/work/stage/usr/local/share/locale/sq/LC_MESSAGES/ghemical.mo:No such file or directory
*** Error code 1
Stop.
make: stopped in /usr/ports/science/ghemical