[package - main-i386-default][biology/locarna] Failed for locarna-2.0.0 in build
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Date: Tue, 07 Nov 2023 23:46:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/pd5268d5f7157_s501bdf3001/logs/locarna-2.0.0.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=pd5268d5f7157_s501bdf3001
Log:
=>> Building biology/locarna
build started at Tue Nov 7 23:44:50 UTC 2023
port directory: /usr/ports/biology/locarna
package name: locarna-2.0.0
building for: FreeBSD main-i386-default-job-01 15.0-CURRENT FreeBSD 15.0-CURRENT 1500003 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1014 Jul 18 01:01 /usr/ports/biology/locarna/Makefile
Ports top last git commit: d5268d5f715
Ports top unclean checkout: no
Port dir last git commit: 2ce2ca5b614
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e
Host OSVERSION: 1500000
Jail OSVERSION: 1500003
Job Id: 01
!!! Jail is newer than host. (Jail: 1500003, Host: 1500000) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1500003
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
UNAME_m=i386
UNAME_p=i386
UNAME_r=15.0-CURRENT
LOCALBASE=/usr/local
UNAME_v=FreeBSD 15.0-CURRENT 1500003
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.3.0-1251-ge8a0e12e
MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-i386-default/01/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.3.0-1251-ge8a0e12e
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/locarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/locarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/locarna/work/.cache HOME=/wrkdirs/usr/ports/biology/locarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/locarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/locarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/locarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/locarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/locarna/work/.cache HOME=/wrkdirs/usr/ports/biology/locarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/locarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/locarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="i
nstall -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.1 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/locarna" EXAMPLESDIR="share/examples/locarna" DATADIR="share/locarna" WWWDIR="www/locarna" ETCDIR="etc/locarna"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/locarna DOCSDIR=/usr/local/share/doc/locarna EXAMPLESDIR=/usr/local/share/examples/locarna WWWDIR=/usr/local/www/locarna ETCDIR=/usr/local/etc/locarna
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> locarna-2.0.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.8.pkg
[main-i386-default-job-01] Installing pkg-1.20.8...
[main-i386-default-job-01] Extracting pkg-1.20.8: .......... done
===> locarna-2.0.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of locarna-2.0.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by locarna-2.0.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by locarna-2.0.0 for building
=> SHA256 Checksum OK for locarna-2.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by locarna-2.0.0 for building
===> Extracting for locarna-2.0.0
=> SHA256 Checksum OK for locarna-2.0.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for locarna-2.0.0
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> locarna-2.0.0 depends on file: /usr/local/lib/libRNA.a - not found
===> Installing existing package /packages/All/viennarna-2.6.4.pkg
[main-i386-default-job-01] Installing viennarna-2.6.4...
[main-i386-default-job-01] `-- Installing gcc12-12.2.0_6...
[main-i386-default-job-01] | `-- Installing binutils-2.40_4,1...
[main-i386-default-job-01] | | `-- Installing gettext-runtime-0.22.3...
[main-i386-default-job-01] | | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-01] | | `-- Extracting gettext-runtime-0.22.3: .......... done
[main-i386-default-job-01] | | `-- Installing zstd-1.5.5...
[main-i386-default-job-01] | | `-- Installing liblz4-1.9.4,1...
[main-i386-default-job-01] | | `-- Extracting liblz4-1.9.4,1: .......... done
[main-i386-default-job-01] | | `-- Extracting zstd-1.5.5: .......... done
<snip>
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd15.0 ld.so
checking how to hardcode library paths into programs... immediate
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for gcc... (cached) cc
checking whether the compiler supports GNU C... (cached) yes
checking whether cc accepts -g... (cached) yes
checking for cc option to enable C11 features... (cached) none needed
checking whether cc understands -c and -o together... (cached) yes
checking how to run the C preprocessor... cpp
checking whether c++ supports C++14 features by default... yes
checking for perl... perl
checking for pod2man... pod2man
checking for doxygen... no
configure: WARNING: doxygen not found - will not generate any doxygen documentation
checking for perl... /usr/local/bin/perl
checking for dot... no
configure: WARNING: dot not found - will not generate graphics for doxygen documentation
checking for pdflatex... no
configure: WARNING: pdflatex not found - will not generate doxygen PDF documentation
checking for makeindex... no
configure: WARNING: makeindex not found - will not generate doxygen PDF documentation
checking for egrep... /usr/bin/egrep
checking for strdup... (cached) yes
checking for pkg-config... true
checking pkg-config is at least version 0.9.0... yes
checking for RNAlib2 >= 2.5.1... yes
configure: Get Vienna RNA configuration from pkg-config and remove -fno-lto.
checking for vrna_C11_features in -lRNA... yes
configure: VRNA_LIBS= -L/usr/local/lib -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp; VRNA_CFLAGS=-I/usr/local/include -I/usr/local/include/ViennaRNA -pthread
checking whether to build with debug information... no
checking for library containing expq... no
configure: WARNING: Cannot find quadmath library: compile w/o quad-pf support.
checking whether to link statically... no
checking whether to link binaries dynamically to libLocARNA... no
checking for _Bool... (cached) yes
checking for stdbool.h that conforms to C99... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Makefile-benchmark
config.status: creating src/Makefile
config.status: creating src/Tests/Makefile
config.status: creating src/Utils/Makefile
config.status: creating Doc/Makefile
config.status: creating Doc/man/Makefile
config.status: creating lib/Makefile
config.status: creating lib/perl/Makefile
config.status: creating lib/perl/MLocarna/Makefile
config.status: creating LocARNA-2.0.pc
config.status: creating src/package_constants.hh
config.status: creating Packaging/debian/control
config.status: creating Packaging/rpm/locarna.spec
config.status: creating src/config.h
config.status: executing libtool commands
config.status: executing depfiles commands
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for locarna-2.0.0
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/locarna/work/locarna-2.0.0'
Making all in src
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/locarna/work/locarna-2.0.0/src'
depbase=`echo ribosum2cc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT ribosum2cc.o -MD -MP -MF $depbase.Tpo -c -o ribosum2cc.o ribosum2cc.cc &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo LocARNA/aligner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aligner.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/aligner.lo LocARNA/aligner.cc &&\
mv -f $depbase.Tpo $depbase.Plo
depbase=`echo LocARNA/aligner_n.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aligner_n.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/aligner_n.lo LocARNA/aligner_n.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aligner.lo -MD -MP -MF LocARNA/.deps/aligner.Tpo -c LocARNA/aligner.cc -fPIC -DPIC -o LocARNA/.libs/aligner.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aligner_n.lo -MD -MP -MF LocARNA/.deps/aligner_n.Tpo -c LocARNA/aligner_n.cc -fPIC -DPIC -o LocARNA/.libs/aligner_n.o
depbase=`echo LocARNA/alignment.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/alignment.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/alignment.lo LocARNA/alignment.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/alignment.lo -MD -MP -MF LocARNA/.deps/alignment.Tpo -c LocARNA/alignment.cc -fPIC -DPIC -o LocARNA/.libs/alignment.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aligner.lo -MD -MP -MF LocARNA/.deps/aligner.Tpo -c LocARNA/aligner.cc -o LocARNA/aligner.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/alignment.lo -MD -MP -MF LocARNA/.deps/alignment.Tpo -c LocARNA/alignment.cc -o LocARNA/alignment.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aligner_n.lo -MD -MP -MF LocARNA/.deps/aligner_n.Tpo -c LocARNA/aligner_n.cc -o LocARNA/aligner_n.o >/dev/null 2>&1
depbase=`echo LocARNA/anchor_constraints.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/anchor_constraints.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/anchor_constraints.lo LocARNA/anchor_constraints.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/anchor_constraints.lo -MD -MP -MF LocARNA/.deps/anchor_constraints.Tpo -c LocARNA/anchor_constraints.cc -fPIC -DPIC -o LocARNA/.libs/anchor_constraints.o
depbase=`echo LocARNA/arc_matches.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/arc_matches.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/arc_matches.lo LocARNA/arc_matches.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/arc_matches.lo -MD -MP -MF LocARNA/.deps/arc_matches.Tpo -c LocARNA/arc_matches.cc -fPIC -DPIC -o LocARNA/.libs/arc_matches.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/anchor_constraints.lo -MD -MP -MF LocARNA/.deps/anchor_constraints.Tpo -c LocARNA/anchor_constraints.cc -o LocARNA/anchor_constraints.o >/dev/null 2>&1
depbase=`echo LocARNA/aux.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aux.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/aux.lo LocARNA/aux.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aux.lo -MD -MP -MF LocARNA/.deps/aux.Tpo -c LocARNA/aux.cc -fPIC -DPIC -o LocARNA/.libs/aux.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/aux.lo -MD -MP -MF LocARNA/.deps/aux.Tpo -c LocARNA/aux.cc -o LocARNA/aux.o >/dev/null 2>&1
depbase=`echo LocARNA/basepairs.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/basepairs.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/basepairs.lo LocARNA/basepairs.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/basepairs.lo -MD -MP -MF LocARNA/.deps/basepairs.Tpo -c LocARNA/basepairs.cc -fPIC -DPIC -o LocARNA/.libs/basepairs.o
depbase=`echo LocARNA/confusion_matrix.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/confusion_matrix.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/confusion_matrix.lo LocARNA/confusion_matrix.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/confusion_matrix.lo -MD -MP -MF LocARNA/.deps/confusion_matrix.Tpo -c LocARNA/confusion_matrix.cc -fPIC -DPIC -o LocARNA/.libs/confusion_matrix.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/arc_matches.lo -MD -MP -MF LocARNA/.deps/arc_matches.Tpo -c LocARNA/arc_matches.cc -o LocARNA/arc_matches.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/basepairs.lo -MD -MP -MF LocARNA/.deps/basepairs.Tpo -c LocARNA/basepairs.cc -o LocARNA/basepairs.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/confusion_matrix.lo -MD -MP -MF LocARNA/.deps/confusion_matrix.Tpo -c LocARNA/confusion_matrix.cc -o LocARNA/confusion_matrix.o >/dev/null 2>&1
depbase=`echo LocARNA/exact_matcher.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/exact_matcher.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/exact_matcher.lo LocARNA/exact_matcher.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/exact_matcher.lo -MD -MP -MF LocARNA/.deps/exact_matcher.Tpo -c LocARNA/exact_matcher.cc -fPIC -DPIC -o LocARNA/.libs/exact_matcher.o
depbase=`echo LocARNA/global_stopwatch.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/global_stopwatch.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/global_stopwatch.lo LocARNA/global_stopwatch.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/global_stopwatch.lo -MD -MP -MF LocARNA/.deps/global_stopwatch.Tpo -c LocARNA/global_stopwatch.cc -fPIC -DPIC -o LocARNA/.libs/global_stopwatch.o
depbase=`echo LocARNA/infty_int.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/infty_int.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/infty_int.lo LocARNA/infty_int.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/infty_int.lo -MD -MP -MF LocARNA/.deps/infty_int.Tpo -c LocARNA/infty_int.cc -fPIC -DPIC -o LocARNA/.libs/infty_int.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/global_stopwatch.lo -MD -MP -MF LocARNA/.deps/global_stopwatch.Tpo -c LocARNA/global_stopwatch.cc -o LocARNA/global_stopwatch.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/infty_int.lo -MD -MP -MF LocARNA/.deps/infty_int.Tpo -c LocARNA/infty_int.cc -o LocARNA/infty_int.o >/dev/null 2>&1
depbase=`echo LocARNA/edge_probs.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/edge_probs.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/edge_probs.lo LocARNA/edge_probs.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/edge_probs.lo -MD -MP -MF LocARNA/.deps/edge_probs.Tpo -c LocARNA/edge_probs.cc -fPIC -DPIC -o LocARNA/.libs/edge_probs.o
depbase=`echo LocARNA/mcc_matrices.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/mcc_matrices.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/mcc_matrices.lo LocARNA/mcc_matrices.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/mcc_matrices.lo -MD -MP -MF LocARNA/.deps/mcc_matrices.Tpo -c LocARNA/mcc_matrices.cc -fPIC -DPIC -o LocARNA/.libs/mcc_matrices.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/mcc_matrices.lo -MD -MP -MF LocARNA/.deps/mcc_matrices.Tpo -c LocARNA/mcc_matrices.cc -o LocARNA/mcc_matrices.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/edge_probs.lo -MD -MP -MF LocARNA/.deps/edge_probs.Tpo -c LocARNA/edge_probs.cc -o LocARNA/edge_probs.o >/dev/null 2>&1
depbase=`echo LocARNA/multiple_alignment.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/multiple_alignment.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/multiple_alignment.lo LocARNA/multiple_alignment.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/multiple_alignment.lo -MD -MP -MF LocARNA/.deps/multiple_alignment.Tpo -c LocARNA/multiple_alignment.cc -fPIC -DPIC -o LocARNA/.libs/multiple_alignment.o
depbase=`echo LocARNA/options.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/options.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/options.lo LocARNA/options.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/options.lo -MD -MP -MF LocARNA/.deps/options.Tpo -c LocARNA/options.cc -fPIC -DPIC -o LocARNA/.libs/options.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/exact_matcher.lo -MD -MP -MF LocARNA/.deps/exact_matcher.Tpo -c LocARNA/exact_matcher.cc -o LocARNA/exact_matcher.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/options.lo -MD -MP -MF LocARNA/.deps/options.Tpo -c LocARNA/options.cc -o LocARNA/options.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/multiple_alignment.lo -MD -MP -MF LocARNA/.deps/multiple_alignment.Tpo -c LocARNA/multiple_alignment.cc -o LocARNA/multiple_alignment.o >/dev/null 2>&1
depbase=`echo LocARNA/ribofit.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/ribofit.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/ribofit.lo LocARNA/ribofit.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/ribofit.lo -MD -MP -MF LocARNA/.deps/ribofit.Tpo -c LocARNA/ribofit.cc -fPIC -DPIC -o LocARNA/.libs/ribofit.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/ribofit.lo -MD -MP -MF LocARNA/.deps/ribofit.Tpo -c LocARNA/ribofit.cc -o LocARNA/ribofit.o >/dev/null 2>&1
depbase=`echo LocARNA/ribosum.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/ribosum.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/ribosum.lo LocARNA/ribosum.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/ribosum.lo -MD -MP -MF LocARNA/.deps/ribosum.Tpo -c LocARNA/ribosum.cc -fPIC -DPIC -o LocARNA/.libs/ribosum.o
depbase=`echo LocARNA/rna_data.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_data.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/rna_data.lo LocARNA/rna_data.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_data.lo -MD -MP -MF LocARNA/.deps/rna_data.Tpo -c LocARNA/rna_data.cc -fPIC -DPIC -o LocARNA/.libs/rna_data.o
depbase=`echo LocARNA/rna_ensemble.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_ensemble.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/rna_ensemble.lo LocARNA/rna_ensemble.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_ensemble.lo -MD -MP -MF LocARNA/.deps/rna_ensemble.Tpo -c LocARNA/rna_ensemble.cc -fPIC -DPIC -o LocARNA/.libs/rna_ensemble.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_ensemble.lo -MD -MP -MF LocARNA/.deps/rna_ensemble.Tpo -c LocARNA/rna_ensemble.cc -o LocARNA/rna_ensemble.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/ribosum.lo -MD -MP -MF LocARNA/.deps/ribosum.Tpo -c LocARNA/ribosum.cc -o LocARNA/ribosum.o >/dev/null 2>&1
depbase=`echo LocARNA/rna_structure.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_structure.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/rna_structure.lo LocARNA/rna_structure.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_structure.lo -MD -MP -MF LocARNA/.deps/rna_structure.Tpo -c LocARNA/rna_structure.cc -fPIC -DPIC -o LocARNA/.libs/rna_structure.o
depbase=`echo LocARNA/scoring.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/scoring.lo -MD -MP -MF $depbase.Tpo -c -o LocARNA/scoring.lo LocARNA/scoring.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/scoring.lo -MD -MP -MF LocARNA/.deps/scoring.Tpo -c LocARNA/scoring.cc -fPIC -DPIC -o LocARNA/.libs/scoring.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_structure.lo -MD -MP -MF LocARNA/.deps/rna_structure.Tpo -c LocARNA/rna_structure.cc -o LocARNA/rna_structure.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/local/include/ViennaRNA -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/catch2 -MT LocARNA/rna_data.lo -MD -MP -MF LocARNA/.deps/rna_data.Tpo -c LocARNA/rna_data.cc -o LocARNA/rna_data.o >/dev/null 2>&1
LocARNA/scoring.cc:57:29: error: no member named 'bind2nd' in namespace 'std'
std::bind2nd(std::minus<score_t>(), x));
~~~~~^
LocARNA/scoring.cc:61:26: error: no member named 'bind2nd' in namespace 'std'
m.transform(std::bind2nd(std::minus<score_t>(), x));
~~~~~^
2 errors generated.
gmake[2]: *** [Makefile:939: LocARNA/scoring.lo] Error 1
gmake[2]: *** Waiting for unfinished jobs....
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/locarna/work/locarna-2.0.0/src'
gmake[1]: *** [Makefile:671: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/locarna/work/locarna-2.0.0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/locarna