[package - 124amd64-quarterly][science/votca] Failed for votca-2022.1_1 in build
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Date: Tue, 07 Nov 2023 02:03:41 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy2/data/124amd64-quarterly/39138a92243f/logs/votca-2022.1_1.log Build URL: https://pkg-status.freebsd.org/beefy2/build.html?mastername=124amd64-quarterly&build=39138a92243f Log: =>> Building science/votca build started at Tue Nov 7 01:50:27 UTC 2023 port directory: /usr/ports/science/votca package name: votca-2022.1_1 building for: FreeBSD 124amd64-quarterly-job-09 12.4-RELEASE-p6 FreeBSD 12.4-RELEASE-p6 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2020 Oct 3 01:01 /usr/ports/science/votca/Makefile Ports top last git commit: 39138a922 Ports top unclean checkout: no Port dir last git commit: 2195304f9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e Host OSVERSION: 1500000 Jail OSVERSION: 1204000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p6 UNAME_r=12.4-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.3.0-1251-ge8a0e12e MASTERMNT=/usr/local/poudriere/data/.m/124amd64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/124amd64-quarterly/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/124amd64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.3.0-1251-ge8a0e12e SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for votca-2022.1_1: APPS=on: Build applications ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" B SD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- APPS="" NO_APPS="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.34.1 PERL_VER=5.34 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.34 DOCSDIR="share/doc/votca" EXAMPLESDIR="share/examples/votca" DATADIR="share/votca" WWWDIR="www/votca" ETCDIR="etc/votca" --End PLIST_SUB-- --SUB_LIST-- APPS="" NO_APPS="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> votca-2022.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.8.pkg [124amd64-quarterly-job-09] Installing pkg-1.20.8... [124amd64-quarterly-job-09] Extracting pkg-1.20.8: .......... done ===> votca-2022.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of votca-2022.1_1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2022.1_1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2022.1_1 for building => SHA256 Checksum OK for votca-votca-v2022.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2022.1_1 for building ===> Extracting for votca-2022.1_1 => SHA256 Checksum OK for votca-votca-v2022.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for votca-2022.1_1 ===> Applying FreeBSD patches for votca-2022.1_1 from /usr/ports/science/votca/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> votca-2022.1_1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.15.pkg [124amd64-quarterly-job-09] Installing bash-5.2.15... [124amd64-quarterly-job-09] `-- Installing gettext-runtime-0.22_1... [124amd64-quarterly-job-09] | `-- Installing indexinfo-0.3.1... [124amd64-quarterly-job-09] | `-- Extracting indexinfo-0.3.1: .... done [124amd64-quarterly-job-09] `-- Extracting gettext-runtime-0.22_1: .......... done [124amd64-quarterly-job-09] `-- Installing readline-8.2.1... [124amd64-quarterly-job-09] `-- Extracting readline-8.2.1: .......... done [124amd64-quarterly-job-09] Extracting bash-5.2.15: .......... done ===> votca-2022.1_1 depends on executable: bash - found ===> Returning to build of votca-2022.1_1 ===> votca-2022.1_1 depends on executable: lmp - not found ===> Installing existing package /packages/All/lammps-2023.08.02.pkg [124amd64-quarterly-job-09] Installing lammps-2023.08.02... [124amd64-quarterly-job-09] `-- Installing curl-8.4.0... [124amd64-quarterly-job-09] | `-- Installing libnghttp2-1.57.0... [124amd64-quarterly-job-09] | `-- Extracting libnghttp2-1.57.0: .......... done [124amd64-quarterly-job-09] | `-- Installing libpsl-0.21.2_3... [124amd64-quarterly-job-09] | | `-- Installing libidn2-2.3.4... [124amd64-quarterly-job-09] | | `-- Installing libunistring-1.1... [124amd64-quarterly-job-09] | | `-- Extracting libunistring-1.1: .......... done [124amd64-quarterly-job-09] | | `-- Extracting libidn2-2.3.4: .......... done [124amd64-quarterly-job-09] | `-- Extracting libpsl-0.21.2_3: .......... done [124amd64-quarterly-job-09] | `-- Installing libssh2-1.11.0,3... [124amd64-quarterly-job-09] | `-- Extracting libssh2-1.11.0,3: .......... done <snip> ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:56:33: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] } else if (boost::filesystem::extension(filepath) == ".dlpc") { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:61:33: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] } else if (boost::filesystem::extension(filepath) == ".dlph") { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:70:26: warning: 'basename' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] if (boost::filesystem::basename(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ 4 warnings generated. [ 25% 85/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c /wrkdirs/usr/por ts/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc:159:26: warning: 'basename' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] if (boost::filesystem::basename(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ 1 warning generated. [ 25% 86/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022. 1/csg/src/libcsg/modules/io/growriter.cc [ 25% 87/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022. 1/csg/src/libcsg/modules/io/groreader.cc [ 25% 88/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o.d -o 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-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -MF csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o.d -o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csg_boltzmann/stdanalysis.cc [ 40% 135/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 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-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -MF csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o.d -o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csg_boltzmann/tabulatedpotential.cc [ 41% 139/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -MF csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o.d -o csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csg_boltzmann/main.cc [ 41% 140/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -o csg/src/csg_boltzmann/csg_boltzmann -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 41% 141/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csg_boltzmann && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csg_boltzmann/csg_boltzmann --format groff --out csg_boltzmann.man [ 42% 142/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 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-Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -MF csg/src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o.d -o csg/src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csgapps/orientcorr/orientcorr.cc [ 43% 145/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -o csg/src/csgapps/orientcorr/csg_orientcorr 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csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -MF csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o.d -o csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csgapps/part_dist/part_dist.cc [ 43% 147/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -o csg/src/csgapps/part_dist/csg_part_dist -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so 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-Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -o csg/src/csgapps/partial_rdf/csg_partial_rdf -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 45% 151/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -MF csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o.d -o csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csgapps/radii/radii.cc [ 45% 152/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -o csg/src/csgapps/radii/csg_radii -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 45% 153/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name fluctuations/csg_fluctuations --format groff --out fluctuations.man [ 45% 154/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name orientcorr/csg_orientcorr --format groff --out orientcorr.man [ 46% 155/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name part_dist/csg_part_dist --format groff --out part_dist.man [ 46% 156/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name partial_rdf/csg_partial_rdf --format groff --out partial_rdf.man [ 46% 157/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name radii/csg_radii --format groff --out radii.man [ 47% 158/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/scripts && /usr/local/bin/cmake -DINPUT="csg_call.in2" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/CMakeModules/gitscript.cmake [ 47% 159/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/scripts && /usr/local/bin/cmake -E env VOTCASHARE="/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/share" PATH="/wrkdirs/usr/ports/science/votca/work/.build/csg/scripts:/wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools:/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin" VOTCA_CSG_DEFAULTS="/wrkdirs/usr/ports/science/votca/work/.build/csg/share/xml/csg_defaults.xml" /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name /wrkdirs/usr/ports/science/votca/work/.build/csg/scripts/csg_call --format groff --out csg_call.man [ 47% 160/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/scripts && /usr/local/bin/cmake -DINPUT="csg_inverse.in2" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/CMakeModules/gitscript.cmake [ 48% 161/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/scripts && /usr/local/bin/cmake -E env VOTCASHARE="/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/share" PATH="/wrkdirs/usr/ports/science/votca/work/.build/csg/scripts:/wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools:/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin" VOTCA_CSG_DEFAULTS="/wrkdirs/usr/ports/science/votca/work/.build/csg/share/xml/csg_defaults.xml" /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name /wrkdirs/usr/ports/science/votca/work/.build/csg/scripts/csg_inverse --format groff --out csg_inverse.man [ 48% 162/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -MF csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o.d -o csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csgapps/sphericalorder/sphericalorder.cc [ 48% 163/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -o csg/src/csgapps/sphericalorder/csg_sphericalorder -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 48% 164/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name sphericalorder/csg_sphericalorder --format groff --out sphericalorder.man [ 49% 165/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -MF csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o.d -o csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/csgapps/traj_force/traj_force.cc [ 49% 166/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -o csg/src/csgapps/traj_force/csg_traj_force -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 49% 167/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/csgapps && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name traj_force/csg_traj_force --format groff --out traj_force.man [ 50% 168/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /usr/local/bin/cmake -DINPUT="xtp_basisset.in2" -DOUTPUT="xtp_basisset" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitscript.cmake [ 50% 169/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name xtp_basisset --format groff --out xtp_basisset.man [ 50% 170/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /usr/local/bin/cmake -DINPUT="xtp_update_mapfile.in2" -DOUTPUT="xtp_update_mapfile" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitscript.cmake [ 51% 171/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name xtp_update_mapfile --format groff --out xtp_update_mapfile.man [ 51% 172/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /usr/local/bin/cmake -DINPUT="xtp_modify_jobfile.in2" -DOUTPUT="xtp_modify_jobfile" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitscript.cmake [ 51% 173/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name xtp_modify_jobfile --format groff --out xtp_modify_jobfile.man [ 51% 174/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /usr/local/bin/cmake -DINPUT="xtp_autogen_mapping.in2" -DOUTPUT="xtp_autogen_mapping" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitscript.cmake [ 52% 175/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -MF csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o.d -o csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/share/template/template_serial.cc [ 52% 176/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -o csg/share/template/template_serial -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 52% 177/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /usr/local/bin/cmake -DINPUT="xtp_qmmm2qm.in2" -DOUTPUT="xtp_qmmm2qm" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitscript.cmake [ 53% 178/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name xtp_autogen_mapping --format groff --out xtp_autogen_mapping.man [ 53% 179/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/scripts && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name xtp_qmmm2qm --format groff --out xtp_qmmm2qm.man [ 53% 180/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/src/libxtp && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitversion.cmake [ 54% 181/331] cd /wrkdirs/usr/ports/science/votca/work/.build/xtp/share/benchmark && /usr/local/bin/cmake -DINPUT="xtp_benchmark.out" -DOUTPUT="xtp_benchmark" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-2022.1" -P /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/CMakeModules/gitscript.cmake [ 54% 182/331] /usr/bin/c++ -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/xtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/include -I/wrkdirs/usr/ports/science/votca/work/.build/xtp/include -I/wrkdirs/usr/ports/science/votca/work/.build/xtp/include/votca/xtp -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -isystem /usr/local/include/libecpint -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp/GaussianQuadratureBase.cc [ 54% 183/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -MF csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o.d -o csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -c 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-Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp/calculators/kmclifetime.cc FAILED: xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o /usr/bin/c++ -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/xtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/include -I/wrkdirs/usr/ports/science/votca/work/.build/xtp/include -I/wrkdirs/usr/ports/science/votca/work/.build/xtp/include/votca/xtp -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -isystem /usr/local/include/libecpint -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -MD -MT xtp/sr c/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp/calculators/kmclifetime.cc In file included from /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp/calculators/kmclifetime.cc:24: /usr/local/include/boost/progress.hpp:23:3: error: This header is deprecated and will be removed. (You can define BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.) # error This header is deprecated and will be removed. (You can define BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.) ^ In file included from /wrkdirs/usr/ports/science/votca/work/votca-2022.1/xtp/src/libxtp/calculators/kmclifetime.cc:24: In file included from /usr/local/include/boost/progress.hpp:29: /usr/local/include/boost/timer.hpp:21:3: error: This header is deprecated and will be removed. (You can define BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.) # error This header is deprecated and will be removed. (You can define BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.) ^ 2 errors generated. 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Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/votca