[package - main-i386-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.14.0 in build
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Date: Mon, 29 May 2023 03:26:42 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p8fa1ee41e29a_sbaef3a5b58/logs/ncbi-blast+-2.14.0.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p8fa1ee41e29a_sbaef3a5b58
Log:
=>> Building biology/ncbi-blast+
build started at Mon May 29 03:21:26 UTC 2023
port directory: /usr/ports/biology/ncbi-blast+
package name: ncbi-blast+-2.14.0
building for: FreeBSD main-i386-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400088 i386
maintained by: jwb@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400088
Job Id: 08
!!! Jail is newer than host. (Jail: 1400088, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-blast+-2.14.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-i386-default-job-08] Installing pkg-1.19.1_1...
[main-i386-default-job-08] Extracting pkg-1.19.1_1: .......... done
===> ncbi-blast+-2.14.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-blast+-2.14.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
=> ncbi-blast-2.14.0+-src.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.14.0+-src.tar.gz
ncbi-blast-2.14.0+-src.tar.gz 26 MB 17 MBps 01s
===> Fetching all distfiles required by ncbi-blast+-2.14.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.14.0 for building
=> SHA256 Checksum OK for ncbi-blast-2.14.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.14.0 for building
===> Extracting for ncbi-blast+-2.14.0
=> SHA256 Checksum OK for ncbi-blast-2.14.0+-src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-blast+-2.14.0
<snip>
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/mask_regexp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/arg_regexp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o
/bin/rm -f libxregexp.a .libxregexp.a.stamp
ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib
/bin/ln -f libxregexp.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxregexp.a
/bin/ln -f .xregexp.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xregexp.dep
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j2 --jobserver-auth=15,16 all
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o
/bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp
ar cr libxregexp_template_tester.a regexp_template_tester.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib
/bin/ln -f libxregexp_template_tester.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a
/bin/ln -f .xregexp_template_tester.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp'
/usr/local/bin/gmake -C compress -w -j2 --jobserver-auth=11,12 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util'
gmake[4]: warning: -j2 forced in submake: resetting jobserver mode.
/usr/local/bin/gmake -C bzip2 -w -j2 --jobserver-auth=13,14 all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
NOTE: Skipping project bzip2 due to unmet requirements:
LocalBZ2
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j2 --jobserver-auth=17,18 mark-as-disabled
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2'
/usr/local/bin/gmake -C zlib -w -j2 --jobserver-auth=13,14 all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
NOTE: Skipping project zlib due to unmet requirements:
LocalZ
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/zlib TMPL=zlib -w -j2 --jobserver-auth=17,18 mark-as-disabled
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib'
/usr/local/bin/gmake -C api -w -j2 --jobserver-auth=13,14 all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -w -j2 --jobserver-auth=15,16 export-headers
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -w -j2 --jobserver-auth=15,16 flag-stamps
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -w -j2 --jobserver-auth=15,16 all
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp:31:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/stream_util.hpp:59:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:819:19: error: call to constructor of 'ncbi::CLZOCompressor' is ambiguous
new CLZOCompressor(level, flags), eDelete, in_bufsize, out_bufsize)
^ ~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:688:5: note: candidate constructor
CLZOCompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:695:26: note: candidate constructor
NCBI_DEPRECATED_CTOR(CLZOCompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:839:19: error: call to constructor of 'ncbi::CLZOCompressor' is ambiguous
new CLZOCompressor(level, flags),
^ ~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:688:5: note: candidate constructor
CLZOCompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:695:26: note: candidate constructor
NCBI_DEPRECATED_CTOR(CLZOCompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:846:19: error: call to constructor of 'ncbi::CLZOCompressor' is ambiguous
new CLZOCompressor(CLZOCompression::eLevel_Default, flags),
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:688:5: note: candidate constructor
CLZOCompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:695:26: note: candidate constructor
NCBI_DEPRECATED_CTOR(CLZOCompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:879:18: error: call to constructor of 'ncbi::CLZODecompressor' is ambiguous
new CLZODecompressor(flags), eDelete, in_bufsize, out_bufsize)
^ ~~~~~
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:749:5: note: candidate constructor
CLZODecompressor(TLZOFlags flags = 0);
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:754:26: note: candidate constructor
NCBI_DEPRECATED_CTOR(CLZODecompressor(
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:895:19: error: call to constructor of 'ncbi::CLZODecompressor' is ambiguous
new CLZODecompressor(flags),
^ ~~~~~
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:749:5: note: candidate constructor
CLZODecompressor(TLZOFlags flags = 0);
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/compress/lzo.hpp:754:26: note: candidate constructor
NCBI_DEPRECATED_CTOR(CLZODecompressor(
^
5 errors generated.
gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.rules:100: stream_util.o] Error 1
gmake[6]: *** Waiting for unfinished jobs....
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_zip.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/tar.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/reader_zlib.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zstd.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zlib.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/lzo.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/bzip2.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/streambuf.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/compress.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=03f8f195-fdd0-11ed-b6ae-ac1f6bc257a0 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
FAILED: src/util/compress/api/Makefile.compress.lib
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
/bin/rm -f libxcompress.a .xcompress.dep .libxcompress.a.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcompress.dep \
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcompress-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcompress-static.dep
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.meta_l:332: all.nonusr] Error 2
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-blast+