From nobody Thu May 25 18:44:38 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QRxml25bkz4WY8h for ; Thu, 25 May 2023 18:44:39 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QRxmk6nnYz42S9 for ; Thu, 25 May 2023 18:44:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1685040278; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=kcVa1F2m6QNEehg853rl9aUsW2r772nqeWjC40KTX00=; b=WeZf81Tworron4ArnQn3XWfXarBa2Xq4VdsF5n8hXnzHgAsHfMRFJC3DNVn+6S4JRDfk3V JmRp1kUzut6yMpPYVXOJCuBENzpNg2F37tq4tIBSXFQl8C7TaJQ03CUQ3qcccxzcWcYTJf psL16GAdfPKGgEU7rk48c7C59LbpetBKGsOSCuEfSQCUz6m7+/KNEvcSOnnunXNW8I7fYM +Lj2qwPnuinJ9g+IXmNNCGTKYF+TsLUJqVLbmNnUmlMvhNm+C9ls0TnCg7QCfyo/sSC3GG 63BM9XOYtvvYvhlvQly1G2BTmOEFZNfXRGR9bMR/TLtcihi5sSvJC45XRVZcPg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1685040278; a=rsa-sha256; cv=none; b=mkzVtqpwyH3cSZDg4CW+liMTmIue6UM/Jb4MBnld0Z+ASMQtB3G5XYiki7mMne6tWt1OK+ CY7VijHahB0EUu5bg36FoITHstYe6ZjAyoM6FGqGzML+JRAJy0GV3q9uptGVDT9v2ltk8e lxJQm7oDKeSwdPm4qkPTacbzcktV86vF8bMmUZNFKkz9gptCYNAxKlHeNnrzIH/4gVKks/ c9yKdgr6r53Qd5tRBVqmeWYQm965Pq9UibzlJKUqIgoFwQ4SS1g2pVlONHxZ30JoaUG2sz QTYXDhoOd1cojn4Ydo3/RGjcxHfZYz37Pa2an/F4haBwVs/J8W97YLWMftuahw== Received: from beefy4.nyi.freebsd.org (beefy4.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:13]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4QRxmk5sBJzc5h for ; Thu, 25 May 2023 18:44:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 17b9f by beefy4.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy4.nyi.freebsd.org); Thu, 25 May 2023 18:44:38 +0000 To: yuri@FreeBSD.org Subject: [package - 124i386-quarterly][science/py-pymol] Failed for py39-pymol-2.5.0.97 in lib-depends Cc: pkg-fallout@FreeBSD.org Date: Thu, 25 May 2023 18:44:38 +0000 Message-Id: <646fac96.17b9f.20cca7ce@beefy4.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/56368df6bdde/logs/py39-pymol-2.5.0.97.log Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=56368df6bdde Log: =>> Building science/py-pymol build started at Thu May 25 18:44:17 UTC 2023 port directory: /usr/ports/science/py-pymol package name: py39-pymol-2.5.0.97 building for: FreeBSD 124i386-quarterly-job-07 12.4-RELEASE-p2 FreeBSD 12.4-RELEASE-p2 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400078 Jail OSVERSION: 1204000 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p2 UNAME_r=12.4-RELEASE-p2 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/124i386-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124i386-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-pymol-2.5.0.97: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pymol/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-pymol/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pymol/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST " M ANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PYQT_APIDIR=share/PyQt5/3.9/qsci PYQT_DOCDIR=share/doc/PyQt5/3.9 PYQT_EXAMPLEDIR=share/examples/PyQt5/3.9 PYQT_SIPDIR=/usr/local/lib/python3.9/site-packages/PyQt5/bindings PYQT_DESIGNERDIR=/designer/PyQt5/3.9 PYQT_QMLDIR=/PyQt5/3.9 PYQT_SIPVERSION=6.7.7 PYQT_QSCIVERSION=2.13.3 PYQT_PYQTVERSION=5.15.9 OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-pymol" EXAMPLESDIR="share/examples/py39-pymol" DATADIR="share/py39-pymol" WWWDIR="www/py39-pymol" ETCDIR="etc/py39-pymol" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-pymol DOCSDIR=/usr/local/share/doc/py39-pymol EXAMPLESDIR=/usr/local/share/examples/py39-pymol WWWDIR=/usr/local/www/py39-pymol ETCDIR=/usr/local/etc/py39-pymol --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.4-RELEASE-p2 OSREL=12.4 OSVERSION=1204000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PyMOL accepted by the user =========================================================================== =================================================== ===> py39-pymol-2.5.0.97 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [124i386-quarterly-job-07] Installing pkg-1.19.1_1... [124i386-quarterly-job-07] Extracting pkg-1.19.1_1: .......... done ===> py39-pymol-2.5.0.97 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-pymol-2.5.0.97 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PyMOL accepted by the user ===> Fetching all distfiles required by py39-pymol-2.5.0.97 for building =========================================================================== =================================================== ===> License PyMOL accepted by the user ===> Fetching all distfiles required by py39-pymol-2.5.0.97 for building => SHA256 Checksum OK for schrodinger-pymol-open-source-v2.5.0-97-gd24468af_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PyMOL accepted by the user ===> Fetching all distfiles required by py39-pymol-2.5.0.97 for building ===> Extracting for py39-pymol-2.5.0.97 => SHA256 Checksum OK for schrodinger-pymol-open-source-v2.5.0-97-gd24468af_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py39-pymol-2.5.0.97 ===> Applying FreeBSD patches for py39-pymol-2.5.0.97 from /usr/ports/science/py-pymol/files =========================================================================== =================================================== ===> py39-pymol-2.5.0.97 depends on package: py39-numpy>=1.16,1<1.25,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.24.1,1.pkg [124i386-quarterly-job-07] Installing py39-numpy-1.24.1,1... [124i386-quarterly-job-07] `-- Installing gcc12-12.2.0_5... [124i386-quarterly-job-07] | `-- Installing binutils-2.40_4,1... [124i386-quarterly-job-07] | | `-- Installing gettext-runtime-0.21.1... [124i386-quarterly-job-07] | | `-- Installing indexinfo-0.3.1... [124i386-quarterly-job-07] | | `-- Extracting indexinfo-0.3.1: .... done [124i386-quarterly-job-07] | | `-- Extracting gettext-runtime-0.21.1: .......... done [124i386-quarterly-job-07] | | `-- Installing zstd-1.5.4... [124i386-quarterly-job-07] | | `-- Installing liblz4-1.9.4,1... [124i386-quarterly-job-07] | | `-- Extracting liblz4-1.9.4,1: .......... done [124i386-quarterly-job-07] | | `-- Extracting zstd-1.5.4: .......... done [124i386-quarterly-job-07] | `-- Extracting binutils-2.40_4,1: .......... done [124i386-quarterly-job-07] | `-- Installing gmp-6.2.1... [124i386-quarterly-job-07] | `-- Extracting gmp-6.2.1: .......... done [124i386-quarterly-job-07] | `-- Installing mpc-1.2.1... [124i386-quarterly-job-07] | | `-- Installing mpfr-4.2.0,1... [124i386-quarterly-job-07] | | `-- Extracting mpfr-4.2.0,1: .......... done [124i386-quarterly-job-07] | `-- Extracting mpc-1.2.1: ......... done [124i386-quarterly-job-07] `-- Extracting gcc12-12.2.0_5: .......... done [124i386-quarterly-job-07] `-- Installing openblas-0.3.20,1... [124i386-quarterly-job-07] `-- Extracting openblas-0.3.20,1: .......... done [124i386-quarterly-job-07] `-- Installing py39-setuptools-63.1.0... [124i386-quarterly-job-07] | `-- Installing python39-3.9.16_2... [124i386-quarterly-job-07] | | `-- Installing libffi-3.4.4... [124i386-quarterly-job-07] | | `-- Extracting libffi-3.4.4: .......... done [124i386-quarterly-job-07] | | `-- Installing mpdecimal-2.5.1... [124i386-quarterly-job-07] | | `-- Extracting mpdecimal-2.5.1: .......... done [124i386-quarterly-job-07] | | `-- Installing readline-8.2.1... [124i386-quarterly-job-07] | | `-- Extracting readline-8.2.1: .......... done [124i386-quarterly-job-07] | `-- Extracting python39-3.9.16_2: .......... done [124i386-quarterly-job-07] `-- Extracting py39-setuptools-63.1.0: .......... done [124i386-quarterly-job-07] `-- Installing suitesparse-umfpack-6.1.0... [124i386-quarterly-job-07] | `-- Installing metis-5.1.0_9... [124i386-quarterly-job-07] | `-- Extracting metis-5.1.0_9: .......... done [124i386-quarterly-job-07] | `-- Installing suitesparse-amd-3.0.3... [124i386-quarterly-job-07] | | `-- Installing suitesparse-config-7.0.1... [124i386-quarterly-job-07] | | `-- Extracting suitesparse-config-7.0.1: .......... done [124i386-quarterly-job-07] | `-- Extracting suitesparse-amd-3.0.3: .......... done [124i386-quarterly-job-07] | `-- Installing suitesparse-camd-3.0.3... [124i386-quarterly-job-07] | `-- Extracting suitesparse-camd-3.0.3: .......... done [124i386-quarterly-job-07] | `-- Installing suitesparse-ccolamd-3.0.3... [124i386-quarterly-job-07] | `-- Extracting suitesparse-ccolamd-3.0.3: .......... done [124i386-quarterly-job-07] | `-- Installing suitesparse-cholmod-4.0.3... [124i386-quarterly-job-07] | | `-- Installing suitesparse-colamd-3.0.3... [124i386-quarterly-job-07] | | `-- Extracting suitesparse-colamd-3.0.3: .......... done [124i386-quarterly-job-07] | `-- Extracting suitesparse-cholmod-4.0.3: .......... done [124i386-quarterly-job-07] `-- Extracting suitesparse-umfpack-6.1.0: .......... done [124i386-quarterly-job-07] Extracting py39-numpy-1.24.1,1: .......... done ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.16_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py39-pymol-2.5.0.97 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> Returning to build of py39-pymol-2.5.0.97 ===> py39-pymol-2.5.0.97 depends on file: /usr/local/include/glm/glm.hpp - not found ===> Installing existing package /packages/All/glm-0.9.9.8,1.pkg [124i386-quarterly-job-07] Installing glm-0.9.9.8,1... [124i386-quarterly-job-07] Extracting glm-0.9.9.8,1: .......... done ===> py39-pymol-2.5.0.97 depends on file: /usr/local/include/glm/glm.hpp - found ===> Returning to build of py39-pymol-2.5.0.97 ===> py39-pymol-2.5.0.97 depends on file: /usr/local/include/mmtf.hpp - not found ===> Installing existing package /packages/All/mmtf-cpp-1.1.0_1.pkg [124i386-quarterly-job-07] Installing mmtf-cpp-1.1.0_1... [124i386-quarterly-job-07] `-- Installing msgpack-cxx-6.0.0... [124i386-quarterly-job-07] `-- Extracting msgpack-cxx-6.0.0: .......... done [124i386-quarterly-job-07] Extracting mmtf-cpp-1.1.0_1: .......... done ===> py39-pymol-2.5.0.97 depends on file: /usr/local/include/mmtf.hpp - found ===> Returning to build of py39-pymol-2.5.0.97 ===> py39-pymol-2.5.0.97 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pymol-2.5.0.97 depends on file: /usr/local/bin/python3.9 - found ===> py39-pymol-2.5.0.97 depends on package: xorgproto>=0 - not found ===> Installing existing package /packages/All/xorgproto-2022.1.pkg [124i386-quarterly-job-07] Installing xorgproto-2022.1... [124i386-quarterly-job-07] Extracting xorgproto-2022.1: .......... done ===> py39-pymol-2.5.0.97 depends on package: xorgproto>=0 - found ===> Returning to build of py39-pymol-2.5.0.97 ===> py39-pymol-2.5.0.97 depends on package: xorgproto>=0 - found =========================================================================== =================================================== ===> py39-pymol-2.5.0.97 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.12.1_2.pkg [124i386-quarterly-job-07] Installing freetype2-2.12.1_2... [124i386-quarterly-job-07] `-- Installing brotli-1.0.9,1... [124i386-quarterly-job-07] `-- Extracting brotli-1.0.9,1: .......... done [124i386-quarterly-job-07] `-- Installing png-1.6.39... [124i386-quarterly-job-07] `-- Extracting png-1.6.39: .......... done [124i386-quarterly-job-07] Extracting freetype2-2.12.1_2: .......... done ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> py39-pymol-2.5.0.97 depends on shared library: libfreetype.soSegmentation fault - not found *** Error code 1 Stop. make: stopped in /usr/ports/science/py-pymol