[package - 124i386-quarterly][science/minc2] Failed for minc2-2.2.00_12,1 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Tue, 23 May 2023 19:33:25 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/34e963521193/logs/minc2-2.2.00_12,1.log
Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=34e963521193
Log:
=>> Building science/minc2
build started at Tue May 23 19:31:34 UTC 2023
port directory: /usr/ports/science/minc2
package name: minc2-2.2.00_12,1
building for: FreeBSD 124i386-quarterly-job-07 12.4-RELEASE-p2 FreeBSD 12.4-RELEASE-p2 i386
maintained by: ports@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400078
Jail OSVERSION: 1204000
Job Id: 07
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1204000
UNAME_v=FreeBSD 12.4-RELEASE-p2
UNAME_r=12.4-RELEASE-p2
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/124i386-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=124i386-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-shared=yes --enable-static=yes --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/minc2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/minc2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/minc2/work/.cache HOME=/wrkdirs/usr/ports/science/minc2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/minc2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/minc2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/minc2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/minc2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/minc2/work/.cache HOME=/wrkdirs/usr/ports/science/minc2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/minc2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/minc2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGR
AM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/minc" EXAMPLESDIR="share/examples/minc" DATADIR="share/minc" WWWDIR="www/minc" ETCDIR="etc/minc"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/minc DOCSDIR=/usr/local/share/doc/minc EXAMPLESDIR=/usr/local/share/examples/minc WWWDIR=/usr/local/www/minc ETCDIR=/usr/local/etc/minc
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_53255a77=yes
CC_OUTPUT_921dbbb2_911cfe02=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
CC_OUTPUT_921dbbb2_af59ad06=yes
CC_OUTPUT_921dbbb2_a15f3fcf=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=12.4-RELEASE-p2
OSREL=12.4
OSVERSION=1204000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> NOTICE:
The minc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> minc2-2.2.00_12,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[124i386-quarterly-job-07] Installing pkg-1.19.1_1...
[124i386-quarterly-job-07] Extracting pkg-1.19.1_1: .......... done
===> minc2-2.2.00_12,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of minc2-2.2.00_12,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The minc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===> Fetching all distfiles required by minc2-2.2.00_12,1 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
The minc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
<snip>
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/transformtags.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/transformtags.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/transformtags.o progs/xfm/transformtags.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o transformtags progs/xfm/transformtags.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/transformtags progs/xfm/transformtags.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/xfm2def.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfm2def.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfm2def.o progs/xfm/xfm2def.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfm2def progs/xfm/xfm2def.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfm2def progs/xfm/xfm2def.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/xfmconcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfmconcat.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfmconcat.o progs/xfm/xfmconcat.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfmconcat progs/xfm/xfmconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfmconcat progs/xfm/xfmconcat.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/xfminvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfminvert.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfminvert.o progs/xfm/xfminvert.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfminvert progs/xfm/xfminvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfminvert progs/xfm/xfminvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/mincconvert/mincconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincconvert/mincconvert.o -MD -MP -MF $depbase.Tpo -c -o progs/mincconvert/mincconvert.o progs/mincconvert/mincconvert.c &&\
mv -f $depbase.Tpo $depbase.Po
progs/mincconvert/mincconvert.c:214:14: warning: implicit declaration of function 'micreatex' is invalid in C99 [-Wimplicit-function-declaration]
new_fd = micreatex(new_fname, flags, &opts);
^
1 warning generated.
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o mincconvert progs/mincconvert/mincconvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/mincconvert progs/mincconvert/mincconvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/mincdump/mincdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/mincdump.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/mincdump.o progs/mincdump/mincdump.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo progs/mincdump/vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/vardata.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/vardata.o progs/mincdump/vardata.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo progs/mincdump/dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/dumplib.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/dumplib.o progs/mincdump/dumplib.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo conversion/ecattominc/ecattominc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/ecattominc.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecattominc.o conversion/ecattominc/ecattominc.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/ecattominc/insertblood.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/insertblood.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/insertblood.o conversion/ecattominc/insertblood.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/ecattominc/ecat_file.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/ecat_file.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecat_file.o conversion/ecattominc/ecat_file.c &&\
mv -f $depbase.Tpo $depbase.Po
conversion/ecattominc/ecat_file.c:1025:7: warning: implicit declaration of function 'get_int32_value' is invalid in C99 [-Wimplicit-function-declaration]
get_int32_value(&dirblock[offset], &value);
^
1 warning generated.
depbase=`echo conversion/ecattominc/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/machine_indep.o conversion/ecattominc/machine_indep.c &&\
mv -f $depbase.Tpo $depbase.Po
conversion/ecattominc/machine_indep.c:20:22: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
*(short int *)to = ntohs(short_value);
^
conversion/ecattominc/machine_indep.c:27:21: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration]
*(long int *)to = ntohl(long_value);
^
conversion/ecattominc/machine_indep.c:35:20: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration]
*(int32_t *)to = ntohl(int32_value);
^
3 warnings generated.
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo conversion/minctoecat/minctoecat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/minctoecat.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/minctoecat.o conversion/minctoecat/minctoecat.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/minctoecat/ecat_write.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/ecat_write.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/ecat_write.o conversion/minctoecat/ecat_write.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/minctoecat/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/machine_indep.o conversion/minctoecat/machine_indep.c &&\
mv -f $depbase.Tpo $depbase.Po
conversion/minctoecat/machine_indep.c:28:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) swab(from, to, length);
^
conversion/minctoecat/machine_indep.c:41:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) swaw((short*)from,to,length);
^
conversion/minctoecat/machine_indep.c:41:21: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) swaw((short*)from,to,length);
^
conversion/minctoecat/machine_indep.c:132:7: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1)
^
conversion/minctoecat/machine_indep.c:142:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp, (short*)(dptr+j), 256);
^
conversion/minctoecat/machine_indep.c:168:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp, (short*)(dptr+j), 256);
^
conversion/minctoecat/machine_indep.c:184:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
read_matrix_data( fptr, strtblk, nblks, dptr, dtype)
^
conversion/minctoecat/machine_indep.c:191:8: warning: implicit declaration of function 'mat_rblk' is invalid in C99 [-Wimplicit-function-declaration]
err = mat_rblk( fptr, strtblk, dptr, nblks);
^
conversion/minctoecat/machine_indep.c:196:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
write_matrix_data( fptr, strtblk, nblks, dptr, dtype)
^
conversion/minctoecat/machine_indep.c:215:8: warning: implicit declaration of function 'mat_wblk' is invalid in C99 [-Wimplicit-function-declaration]
if ( mat_wblk( fptr, strtblk, dptr, nblks) < 0) error_flag++;
^
conversion/minctoecat/machine_indep.c:219:7: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) {
^
conversion/minctoecat/machine_indep.c:231:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw( (short*)bufr1, (short*)bufr2, 256);
^
conversion/minctoecat/machine_indep.c:240:33: warning: incompatible pointer types passing 'char *' to parameter of type 'unsigned short *' [-Wincompatible-pointer-types]
ftovaxf(*((float*)&dptr[k]),&bufr2[j]);
^~~~~~~~~
conversion/minctoecat/machine_indep.c:249:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw( (short*)bufr1, (short*)bufr2, 256);
^
conversion/minctoecat/machine_indep.c:297:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) swab(tmp.b,&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:309:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:311:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw(tmp1.s,(short*)&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:324:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:326:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw(tmp1.s,(short*)&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:343:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:345:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw(tmp1.s,(short*)&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:365:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:379:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:381:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp.b,(short*)tmp1.b,2);
^
conversion/minctoecat/machine_indep.c:394:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:396:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp.b,(short*)tmp1.b,2);
^
conversion/minctoecat/machine_indep.c:409:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:411:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp.b,(short*)tmp1.b,2);
^
28 warnings generated.
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
ld: error: duplicate symbol: matrix_errno
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errno)
>>> defined at ecat_write.c
>>> conversion/minctoecat/ecat_write.o:(.bss+0x0)
ld: error: duplicate symbol: matrix_errtxt
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errtxt)
>>> defined at ecat_write.c
>>> conversion/minctoecat/ecat_write.o:(.bss+0x4)
ld: error: duplicate symbol: matrix_errno
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errno)
>>> defined at machine_indep.c
>>> conversion/minctoecat/machine_indep.o:(.bss+0x0)
ld: error: duplicate symbol: matrix_errtxt
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errtxt)
>>> defined at machine_indep.c
>>> conversion/minctoecat/machine_indep.o:(.bss+0x4)
cc: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[3]: *** [Makefile:2378: minctoecat] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00'
gmake[2]: *** [Makefile:3223: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00'
gmake[1]: *** [Makefile:1499: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/minc2