[package - main-amd64-default][math/py-fastcluster] Failed for py39-fastcluster-1.2.6_1 in build
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Date: Tue, 16 May 2023 21:52:05 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p2acd86f93d11_sd489b2a39d/logs/py39-fastcluster-1.2.6_1.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p2acd86f93d11_sd489b2a39d
Log:
=>> Building math/py-fastcluster
build started at Tue May 16 21:51:59 UTC 2023
port directory: /usr/ports/math/py-fastcluster
package name: py39-fastcluster-1.2.6_1
building for: FreeBSD main-amd64-default-job-09 14.0-CURRENT FreeBSD 14.0-CURRENT 1400088 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
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Host OSVERSION: 1400073
Jail OSVERSION: 1400088
Job Id: 09
!!! Jail is newer than host. (Jail: 1400088, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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sunpoet@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-fastcluster-1.2.6_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-amd64-default-job-09] Installing pkg-1.19.1_1...
[main-amd64-default-job-09] Extracting pkg-1.19.1_1: .......... done
===> py39-fastcluster-1.2.6_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-fastcluster-1.2.6_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6_1 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6_1 for building
===> Extracting for py39-fastcluster-1.2.6_1
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-fastcluster-1.2.6_1
===========================================================================
=======================<phase: build-depends >============================
===> py39-fastcluster-1.2.6_1 depends on package: py39-numpy>=0,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.24.1_4,1.pkg
[main-amd64-default-job-09] Installing py39-numpy-1.24.1_4,1...
[main-amd64-default-job-09] `-- Installing gcc12-12.2.0_6...
[main-amd64-default-job-09] | `-- Installing binutils-2.40_4,1...
[main-amd64-default-job-09] | | `-- Installing gettext-runtime-0.21.1...
[main-amd64-default-job-09] | | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-09] | | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-09] | | `-- Extracting gettext-runtime-0.21.1: .......... done
[main-amd64-default-job-09] | | `-- Installing zstd-1.5.4_2...
[main-amd64-default-job-09] | | `-- Installing liblz4-1.9.4,1...
[main-amd64-default-job-09] | | `-- Extracting liblz4-1.9.4,1: .......... done
[main-amd64-default-job-09] | | `-- Extracting zstd-1.5.4_2: .......... done
[main-amd64-default-job-09] | `-- Extracting binutils-2.40_4,1: .......... done
[main-amd64-default-job-09] | `-- Installing gmp-6.2.1...
[main-amd64-default-job-09] | `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-09] | `-- Installing mpc-1.3.1_1...
[main-amd64-default-job-09] | | `-- Installing mpfr-4.2.0,1...
[main-amd64-default-job-09] | | `-- Extracting mpfr-4.2.0,1: .......... done
[main-amd64-default-job-09] | `-- Extracting mpc-1.3.1_1: ......... done
[main-amd64-default-job-09] `-- Extracting gcc12-12.2.0_6: .......... done
[main-amd64-default-job-09] `-- Installing openblas-0.3.20_1,1...
[main-amd64-default-job-09] `-- Extracting openblas-0.3.20_1,1: .......... done
[main-amd64-default-job-09] `-- Installing py39-setuptools-63.1.0...
[main-amd64-default-job-09] | `-- Installing python39-3.9.16_2...
[main-amd64-default-job-09] | | `-- Installing libffi-3.4.4...
[main-amd64-default-job-09] | | `-- Extracting libffi-3.4.4: .......... done
[main-amd64-default-job-09] | | `-- Installing mpdecimal-2.5.1...
[main-amd64-default-job-09] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-amd64-default-job-09] | | `-- Installing readline-8.2.1...
[main-amd64-default-job-09] | | `-- Extracting readline-8.2.1: .......... done
[main-amd64-default-job-09] | `-- Extracting python39-3.9.16_2: .......... done
[main-amd64-default-job-09] `-- Extracting py39-setuptools-63.1.0: .......... done
[main-amd64-default-job-09] `-- Installing suitesparse-umfpack-6.1.0_1...
[main-amd64-default-job-09] | `-- Installing metis-5.1.0_9...
[main-amd64-default-job-09] | `-- Extracting metis-5.1.0_9: .......... done
[main-amd64-default-job-09] | `-- Installing suitesparse-amd-3.0.3_1...
[main-amd64-default-job-09] | | `-- Installing suitesparse-config-7.0.1_1...
[main-amd64-default-job-09] | | `-- Extracting suitesparse-config-7.0.1_1: .......... done
[main-amd64-default-job-09] | `-- Extracting suitesparse-amd-3.0.3_1: .......... done
[main-amd64-default-job-09] | `-- Installing suitesparse-camd-3.0.3_1...
[main-amd64-default-job-09] | `-- Extracting suitesparse-camd-3.0.3_1: .......... done
[main-amd64-default-job-09] | `-- Installing suitesparse-ccolamd-3.0.3_1...
[main-amd64-default-job-09] | `-- Extracting suitesparse-ccolamd-3.0.3_1: .......... done
[main-amd64-default-job-09] | `-- Installing suitesparse-cholmod-4.0.3_1...
[main-amd64-default-job-09] | | `-- Installing suitesparse-colamd-3.0.3_1...
[main-amd64-default-job-09] | | `-- Extracting suitesparse-colamd-3.0.3_1: .......... done
[main-amd64-default-job-09] | `-- Extracting suitesparse-cholmod-4.0.3_1: .......... done
[main-amd64-default-job-09] `-- Extracting suitesparse-umfpack-6.1.0_1: .......... done
[main-amd64-default-job-09] Extracting py39-numpy-1.24.1_4,1: .......... done
=====
Message from gcc12-12.2.0_6:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.16_2:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py39-fastcluster-1.2.6_1 depends on package: py39-numpy>=0,1 - found
===> Returning to build of py39-fastcluster-1.2.6_1
===> py39-fastcluster-1.2.6_1 depends on package: py39-setuptools>=63.1.0 - found
===> py39-fastcluster-1.2.6_1 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-fastcluster-1.2.6_1
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Apr 25 2023, 01:36:31)
[Clang 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdc
running config
===========================================================================
=======================<phase: build >============================
===> Building for py39-fastcluster-1.2.6_1
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Apr 25 2023, 01:36:31)
[Clang 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdc
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-amd64-cpython-39
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-cpython-39
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-39
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/__memory/temporary_buffer.h:28:1: Generating code for declaration 'std::get_temporary_buffer'
4. /usr/include/c++/v1/__memory/temporary_buffer.h:37:5: LLVM IR generation of compound statement ('{}')
#0 0x00000000053a1061 (/usr/bin/cc+0x53a1061)
#1 0x000000000539f355 (/usr/bin/cc+0x539f355)
#2 0x0000000005347a3e (/usr/bin/cc+0x5347a3e)
#3 0x0000000005347c03 (/usr/bin/cc+0x5347c03)
#4 0x000000082bf90c4e (/lib/libthr.so.3+0x19c4e)
#5 0x000000082bf90209 (/lib/libthr.so.3+0x19209)
#6 0x0000000827f328a3 ([vdso]+0x2d3)
#7 0x000000082e29d27a thr_kill (/lib/libc.so.7+0x13e27a)
#8 0x000000082e215e34 raise (/lib/libc.so.7+0xb6e34)
#9 0x000000082e2c6d09 abort (/lib/libc.so.7+0x167d09)
#10 0x000000082e1f8f41 (/lib/libc.so.7+0x99f41)
#11 0x0000000002b87de5 (/usr/bin/cc+0x2b87de5)
#12 0x0000000002b6483a (/usr/bin/cc+0x2b6483a)
#13 0x0000000002b91254 (/usr/bin/cc+0x2b91254)
#14 0x0000000002ba0ae7 (/usr/bin/cc+0x2ba0ae7)
#15 0x0000000002ba01f1 (/usr/bin/cc+0x2ba01f1)
#16 0x0000000002b9f51b (/usr/bin/cc+0x2b9f51b)
#17 0x0000000002ba1990 (/usr/bin/cc+0x2ba1990)
#18 0x0000000002bab73c (/usr/bin/cc+0x2bab73c)
#19 0x0000000002b8f598 (/usr/bin/cc+0x2b8f598)
#20 0x0000000002b9009b (/usr/bin/cc+0x2b9009b)
#21 0x00000000026c0db0 (/usr/bin/cc+0x26c0db0)
#22 0x00000000026b9d61 (/usr/bin/cc+0x26b9d61)
#23 0x00000000026aca70 (/usr/bin/cc+0x26aca70)
#24 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#25 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#26 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#27 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#28 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#29 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#30 0x00000000026aca9c (/usr/bin/cc+0x26aca9c)
#31 0x00000000026aa86c (/usr/bin/cc+0x26aa86c)
#32 0x00000000031ffbc4 (/usr/bin/cc+0x31ffbc4)
#33 0x00000000031fce76 (/usr/bin/cc+0x31fce76)
#34 0x000000000376383f (/usr/bin/cc+0x376383f)
#35 0x000000000312f47f (/usr/bin/cc+0x312f47f)
#36 0x00000000030bec2f (/usr/bin/cc+0x30bec2f)
#37 0x00000000031ef204 (/usr/bin/cc+0x31ef204)
#38 0x000000000265244b (/usr/bin/cc+0x265244b)
#39 0x000000000265ff34 (/usr/bin/cc+0x265ff34)
#40 0x0000000002f68747 (/usr/bin/cc+0x2f68747)
#41 0x0000000005347975 (/usr/bin/cc+0x5347975)
#42 0x0000000002f68350 (/usr/bin/cc+0x2f68350)
#43 0x0000000002f312cb (/usr/bin/cc+0x2f312cb)
#44 0x0000000002f31598 (/usr/bin/cc+0x2f31598)
#45 0x0000000002f48f3f (/usr/bin/cc+0x2f48f3f)
#46 0x000000000265f961 (/usr/bin/cc+0x265f961)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)
Target: x86_64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-3a1c2c.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-3a1c2c.sh
cc: note: diagnostic msg:
********************
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster