[package - main-amd64-default][science/R-cran-eco] Failed for R-cran-eco-3.1.6_11 in stage
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Date: Tue, 09 May 2023 10:43:44 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: wen@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p25015164dbae_s7adea6dbed/logs/R-cran-eco-3.1.6_11.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p25015164dbae_s7adea6dbed
Log:
=>> Building science/R-cran-eco
build started at Tue May 9 10:43:31 UTC 2023
port directory: /usr/ports/science/R-cran-eco
package name: R-cran-eco-3.1.6_11
building for: FreeBSD main-amd64-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400088 amd64
maintained by: wen@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400088
Job Id: 03
!!! Jail is newer than host. (Jail: 1400088, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--PLIST_SUB--
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--End PLIST_SUB--
--SUB_LIST--
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=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-eco-3.1.6_11 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-amd64-default-job-03] Installing pkg-1.19.1_1...
[main-amd64-default-job-03] Extracting pkg-1.19.1_1: .......... done
===> R-cran-eco-3.1.6_11 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-eco-3.1.6_11
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by R-cran-eco-3.1.6_11 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by R-cran-eco-3.1.6_11 for building
=> SHA256 Checksum OK for eco_3.1-6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by R-cran-eco-3.1.6_11 for building
===> Extracting for R-cran-eco-3.1.6_11
=> SHA256 Checksum OK for eco_3.1-6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-eco-3.1.6_11
===========================================================================
=======================<phase: build-depends >============================
===> R-cran-eco-3.1.6_11 depends on file: /usr/local/bin/R - not found
===> Installing existing package /packages/All/R-4.3.0.pkg
[main-amd64-default-job-03] Installing R-4.3.0...
[main-amd64-default-job-03] `-- Installing cairo-1.17.4_2,3...
[main-amd64-default-job-03] | `-- Installing fontconfig-2.14.2,1...
[main-amd64-default-job-03] | | `-- Installing expat-2.5.0...
[main-amd64-default-job-03] | | `-- Extracting expat-2.5.0: .......... done
[main-amd64-default-job-03] | | `-- Installing freetype2-2.12.1_2...
[main-amd64-default-job-03] | | `-- Installing brotli-1.0.9,1...
<snip>
=====
Message from libthai-0.1.29:
--
===> NOTICE:
The libthai port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from dejavu-2.37_1:
--
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/share/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> R-cran-eco-3.1.6_11 depends on file: /usr/local/bin/R - found
===> Returning to build of R-cran-eco-3.1.6_11
===> R-cran-eco-3.1.6_11 depends on executable: gfortran12 - found
===> R-cran-eco-3.1.6_11 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for R-cran-eco-3.1.6_11
===========================================================================
=======================<phase: build >============================
===========================================================================
=======================<phase: run-depends >============================
===> R-cran-eco-3.1.6_11 depends on file: /usr/local/bin/R - found
===> R-cran-eco-3.1.6_11 depends on executable: gfortran12 - found
===========================================================================
=======================<phase: stage >============================
===> Staging for R-cran-eco-3.1.6_11
===> Generating temporary packing list
* installing *source* package 'eco' ...
** package 'eco' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)'
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/R-cran-eco/work/eco/src'
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c bayes.c -o bayes.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c fintegrate.c -o fintegrate.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsBase.c -o gibbsBase.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsBase2C.c -o gibbsBase2C.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsBaseRC.c -o gibbsBaseRC.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsDP.c -o gibbsDP.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsEM.c -o gibbsEM.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsXBase.c -o gibbsXBase.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsXDP.c -o gibbsXDP.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c gibbsZBase.c -o gibbsZBase.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c preBaseX.c -o preBaseX.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c preDP.c -o preDP.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c preDPX.c -o preDPX.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c rand.c -o rand.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c sample.c -o sample.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c subroutines.c -o subroutines.o
subroutines.c:89:46: error: too few arguments to function call, expected 5, have 4
F77_CALL(dpptrf)("U", &size, pdInv, &errorM);
~~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:892:1: note: 'dpptrf_' declared here
F77_NAME(dpptrf)(const char* uplo, const int* n, double* ap, int* info FCLEN);
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:209:1: note: expanded from here
dpptrf_
^
subroutines.c:91:48: error: too few arguments to function call, expected 5, have 4
F77_CALL(dpptri)("U", &size, pdInv, &errorM);
~~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:897:1: note: 'dpptri_' declared here
F77_NAME(dpptri)(const char* uplo, const int* n, double* ap, int* info FCLEN);
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:210:1: note: expanded from here
dpptri_
^
subroutines.c:137:46: error: too few arguments to function call, expected 5, have 4
F77_CALL(dpptrf)("U", &size, pdInv, &errorM);
~~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:892:1: note: 'dpptrf_' declared here
F77_NAME(dpptrf)(const char* uplo, const int* n, double* ap, int* info FCLEN);
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:209:1: note: expanded from here
dpptrf_
^
subroutines.c:139:48: error: too few arguments to function call, expected 5, have 4
F77_CALL(dpptri)("U", &size, pdInv, &errorM);
~~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:897:1: note: 'dpptri_' declared here
F77_NAME(dpptri)(const char* uplo, const int* n, double* ap, int* info FCLEN);
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:210:1: note: expanded from here
dpptri_
^
subroutines.c:215:95: error: too few arguments to function call, expected 12, have 11
F77_CALL(dsysv)("U", &size, &size, pdInv, &size, factor_out, B, &size, work0, &test, &errorM);
~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:1320:1: note: 'dsysv_' declared here
F77_NAME(dsysv)(const char* uplo, const int* n,
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:256:1: note: expanded from here
dsysv_
^
subroutines.c:223:95: error: too few arguments to function call, expected 12, have 11
F77_CALL(dsysv)("U", &size, &size, pdInv, &size, factor_out, B, &size, work, &lwork, &errorM);
~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:1320:1: note: 'dsysv_' declared here
F77_NAME(dsysv)(const char* uplo, const int* n,
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:256:1: note: expanded from here
dsysv_
^
subroutines.c:259:47: error: too few arguments to function call, expected 5, have 4
F77_CALL(dpptrf)("U", &size, pdTemp, &errorM);
~~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:892:1: note: 'dpptrf_' declared here
F77_NAME(dpptrf)(const char* uplo, const int* n, double* ap, int* info FCLEN);
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:209:1: note: expanded from here
dpptrf_
^
subroutines.c:346:47: error: too few arguments to function call, expected 5, have 4
F77_CALL(dpptrf)("U", &size, pdTemp, &errorM);
~~~~~~~~~~~~~~~~ ^
/usr/local/lib/R/include/R_ext/Lapack.h:892:1: note: 'dpptrf_' declared here
F77_NAME(dpptrf)(const char* uplo, const int* n, double* ap, int* info FCLEN);
^
/usr/local/lib/R/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/usr/local/lib/R/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:209:1: note: expanded from here
dpptrf_
^
8 errors generated.
gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:191: subroutines.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/R-cran-eco/work/eco/src'
ERROR: compilation failed for package 'eco'
* removing '/wrkdirs/usr/ports/science/R-cran-eco/work/stage/usr/local/lib/R/library/eco'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/R-cran-eco