[package - 131i386-default][graphics/py-scikit-image] Failed for py39-scikit-image-0.19.3_2 in configure

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From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 04 May 2023 08:35:00 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     makc@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy15/data/131i386-default/54373d87b552/logs/py39-scikit-image-0.19.3_2.log
Build URL:      https://pkg-status.freebsd.org/beefy15/build.html?mastername=131i386-default&build=54373d87b552
Log:

=>> Building graphics/py-scikit-image
build started at Thu May  4 08:34:35 UTC 2023
port directory: /usr/ports/graphics/py-scikit-image
package name: py39-scikit-image-0.19.3_2
building for: FreeBSD 131i386-default-job-05 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 i386
maintained by: makc@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1301000
Job Id: 05

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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-scikit-image-0.19.3_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131i386-default-job-05] Installing pkg-1.19.1_1...
[131i386-default-job-05] Extracting pkg-1.19.1_1: .......... done
===>   py39-scikit-image-0.19.3_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-scikit-image-0.19.3_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scikit-image-0.19.3_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scikit-image-0.19.3_2 for building
=> SHA256 Checksum OK for scikit-image-scikit-image-v0.19.3_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scikit-image-0.19.3_2 for building
===>  Extracting for py39-scikit-image-0.19.3_2
=> SHA256 Checksum OK for scikit-image-scikit-image-v0.19.3_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-scikit-image-0.19.3_2
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-scikit-image-0.19.3_2 depends on package: py39-numpy>=1.16,1<1.25,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.24.1_4,1.pkg
[131i386-default-job-05] Installing py39-numpy-1.24.1_4,1...
[131i386-default-job-05] `-- Installing gcc12-12.2.0_6...
[131i386-default-job-05] |   `-- Installing binutils-2.40_3,1...
[131i386-default-job-05] |   | `-- Installing gettext-runtime-0.21.1...
[131i386-default-job-05] |   |   `-- Installing indexinfo-0.3.1...
[131i386-default-job-05] |   |   `-- Extracting indexinfo-0.3.1: .... done
[131i386-default-job-05] |   | `-- Extracting gettext-runtime-0.21.1: .......... done
[131i386-default-job-05] |   | `-- Installing zstd-1.5.4_2...
[131i386-default-job-05] |   |   `-- Installing liblz4-1.9.4,1...
[131i386-default-job-05] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[131i386-default-job-05] |   | `-- Extracting zstd-1.5.4_2: .......... done
[131i386-default-job-05] |   `-- Extracting binutils-2.40_3,1: .......... done
[131i386-default-job-05] |   `-- Installing gmp-6.2.1...
[131i386-default-job-05] |   `-- Extracting gmp-6.2.1: .......... done
[131i386-default-job-05] |   `-- Installing mpc-1.3.1_1...
[131i386-default-job-05] |   | `-- Installing mpfr-4.2.0,1...
[131i386-default-job-05] |   | `-- Extracting mpfr-4.2.0,1: .......... done
[131i386-default-job-05] |   `-- Extracting mpc-1.3.1_1: ......... done
[131i386-default-job-05] `-- Extracting gcc12-12.2.0_6: .......... done
[131i386-default-job-05] `-- Installing openblas-0.3.20_1,1...
[131i386-default-job-05] `-- Extracting openblas-0.3.20_1,1: .......... done
[131i386-default-job-05] `-- Installing py39-setuptools-63.1.0...
[131i386-default-job-05] |   `-- Installing python39-3.9.16_2...
[131i386-default-job-05] |   | `-- Installing libffi-3.4.4...
[131i386-default-job-05] |   | `-- Extracting libffi-3.4.4: .......... done
[131i386-default-job-05] |   | `-- Installing mpdecimal-2.5.1...
[131i386-default-job-05] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[131i386-default-job-05] |   | `-- Installing readline-8.2.1...
[131i386-default-job-05] |   | `-- Extracting readline-8.2.1: .......... done
[131i386-default-job-05] |   `-- Extracting python39-3.9.16_2: .......... done
[131i386-default-job-05] `-- Extracting py39-setuptools-63.1.0: .......... done
[131i386-default-job-05] `-- Installing suitesparse-umfpack-6.1.0_1...
[131i386-default-job-05] |   `-- Installing metis-5.1.0_9...
[131i386-default-job-05] |   `-- Extracting metis-5.1.0_9: .......... done
[131i386-default-job-05] |   `-- Installing suitesparse-amd-3.0.3_1...
[131i386-default-job-05] |   | `-- Installing suitesparse-config-7.0.1_1...
[131i386-default-job-05] |   | `-- Extracting suitesparse-config-7.0.1_1: .......... done
[131i386-default-job-05] |   `-- Extracting suitesparse-amd-3.0.3_1: .......... done
[131i386-default-job-05] |   `-- Installing suitesparse-camd-3.0.3_1...
[131i386-default-job-05] |   `-- Extracting suitesparse-camd-3.0.3_1: .......... done
[131i386-default-job-05] |   `-- Installing suitesparse-ccolamd-3.0.3_1...
[131i386-default-job-05] |   `-- Extracting suitesparse-ccolamd-3.0.3_1: .......... done
[131i386-default-job-05] |   `-- Installing suitesparse-cholmod-4.0.3_1...
[131i386-default-job-05] |   | `-- Installing suitesparse-colamd-3.0.3_1...
[131i386-default-job-05] |   | `-- Extracting suitesparse-colamd-3.0.3_1: .......... done
[131i386-default-job-05] |   `-- Extracting suitesparse-cholmod-4.0.3_1: .......... done
[131i386-default-job-05] `-- Extracting suitesparse-umfpack-6.1.0_1: .......... done
[131i386-default-job-05] Extracting py39-numpy-1.24.1_4,1: .......... done
=====
Message from gcc12-12.2.0_6:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.16_2:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:

--
===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   py39-scikit-image-0.19.3_2 depends on package: py39-numpy>=1.16,1<1.25,1 - found
===>   Returning to build of py39-scikit-image-0.19.3_2
===>   py39-scikit-image-0.19.3_2 depends on package: py39-packaging>0 - not found
===>   Installing existing package /packages/All/py39-packaging-23.1.pkg
[131i386-default-job-05] Installing py39-packaging-23.1...
[131i386-default-job-05] Extracting py39-packaging-23.1: .......... done
===>   py39-scikit-image-0.19.3_2 depends on package: py39-packaging>0 - found
===>   Returning to build of py39-scikit-image-0.19.3_2
===>   py39-scikit-image-0.19.3_2 depends on package: py39-pythran>0 - not found
===>   Installing existing package /packages/All/py39-pythran-0.12.1.pkg
[131i386-default-job-05] Installing py39-pythran-0.12.1...
[131i386-default-job-05] `-- Installing py39-beniget-0.4.1...
[131i386-default-job-05] |   `-- Installing py39-gast-0.5.4...
[131i386-default-job-05] |   `-- Extracting py39-gast-0.5.4: .......... done
[131i386-default-job-05] `-- Extracting py39-beniget-0.4.1: .......... done
[131i386-default-job-05] `-- Installing py39-ply-3.11...
[131i386-default-job-05] `-- Extracting py39-ply-3.11: .......... done
[131i386-default-job-05] Extracting py39-pythran-0.12.1: .......... done
===>   py39-scikit-image-0.19.3_2 depends on package: py39-pythran>0 - found
===>   Returning to build of py39-scikit-image-0.19.3_2
===>   py39-scikit-image-0.19.3_2 depends on executable: cython-3.9 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.34.pkg
[131i386-default-job-05] Installing py39-cython-0.29.34...
[131i386-default-job-05] Extracting py39-cython-0.29.34: .......... done
===>   py39-scikit-image-0.19.3_2 depends on executable: cython-3.9 - found
===>   Returning to build of py39-scikit-image-0.19.3_2
===>   py39-scikit-image-0.19.3_2 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-scikit-image-0.19.3_2 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py39-scikit-image-0.19.3_2
setup.py:9: DeprecationWarning: 

  `numpy.distutils` is deprecated since NumPy 1.23.0, as a result
  of the deprecation of `distutils` itself. It will be removed for
  Python >= 3.12. For older Python versions it will remain present.
  It is recommended to use `setuptools < 60.0` for those Python versions.
  For more details, see:
    https://numpy.org/devdocs/reference/distutils_status_migration.html 


  from numpy.distutils.command.build_ext import build_ext as npy_build_ext
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 20, in <module>
    from pythran.dist import PythranBuildExt as pythran_build_ext
  File "/usr/local/lib/python3.9/site-packages/pythran/__init__.py", line 42, in <module>
    from pythran.toolchain import (generate_cxx, compile_cxxfile, compile_cxxcode,
  File "/usr/local/lib/python3.9/site-packages/pythran/toolchain.py", line 12, in <module>
    from pythran.middlend import refine, mark_unexported_functions
  File "/usr/local/lib/python3.9/site-packages/pythran/middlend.py", line 4, in <module>
    from pythran.optimizations import (ComprehensionPatterns, ListCompToGenexp,
  File "/usr/local/lib/python3.9/site-packages/pythran/optimizations/__init__.py", line 21, in <module>
    from .pattern_transform import PatternTransform
  File "/usr/local/lib/python3.9/site-packages/pythran/optimizations/pattern_transform.py", line 346, in <module>
    getattr(PatternTransform, attr_name) + (known_pattern,))
AttributeError: type object 'PatternTransform' has no attribute 'typePatterns'
*** Error code 1

Stop.
make: stopped in /usr/ports/graphics/py-scikit-image