From nobody Wed May 03 08:31:04 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QB9Bw6qCKz495Cb for ; Wed, 3 May 2023 08:31:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QB9Bw3KBpz4dJc; Wed, 3 May 2023 08:31:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1683102664; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=mWEx85LvL6Mcjb5LvHKvr7NKaE8ytvUl6bnD2euDGno=; b=fIOWP9ZOjyA/cD95ZklTWxoSGcuz65kLraDuHO2NVXN03ramuyrkSCWS0IgdZ9JYBBHjUA sZTl0dfuEUtyqabAFU/M3y2CHIh7DpiSO6jVzy9nVr3PyQyGZCBFv7p9Dpn1AHSJGrbhzX BP1ejE5QG60D4d1gEz69YtrZDXUCkJrB4jA77Aq/RmMR1KxNR6DNK3mHe0sHTXLXHKII5V awYfqhxb0fhK4zjAvNSuuIu/kM+BxWhCOw+OAiSs2TOFKAKz9qiXvakyqV9YPjJl4kG1VH buxBed4lCOtugaL3E6vLMDuGwNJhTE1yjWHClYLz7gevMeWcCXJX5qhLbRweCA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1683102664; a=rsa-sha256; cv=none; b=Au15Q7AdRmFvj7BIsNFOtW9SmzerVd9yIpYxhfXyKuon1jyWS4o/+Nz0Zmq9FcgkUT+Y9X OCZKmp1L/BIN7IAT1aRLppj8fX/kKWQr6uWDOjw2yn8amljAq31LG6o4nQrU/l9tOuOBMY ndsNtanG7QEjMzNsRspFeEO650APV6LoAhnCsQhnwdpSDqkGuVClEbBejqpWdoUZ4ROuoj 1i860Zp1Mm9k6Idmb42cjdwU9gDzYt6LA+mjCoEKNMUHFclKlFzdeUCI3P0vPL31dPuf0G GYG+J4e/6K3CRvz2grxtTj7o26OJoUyxS1mXIst0paqIdDgeH3Lz7qmU9Ko81g== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4QB9Bw2N2XzNm3; Wed, 3 May 2023 08:31:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (localhost [127.0.0.1]) by beefy18.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 3438V41Q078873; Wed, 3 May 2023 08:31:04 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy18.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 3438V4tA078872; Wed, 3 May 2023 08:31:04 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Wed, 3 May 2023 08:31:04 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202305030831.3438V4tA078872@beefy18.nyi.freebsd.org> To: tota@FreeBSD.org Subject: [package - main-amd64-default][math/R-cran-NMF] Failed for R-cran-NMF-0.21.0_4 in stage Cc: pkg-fallout@FreeBSD.org X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/pdf5b273c8e36_s83d5725005/logs/R-cran-NMF-0.21.0_4.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=pdf5b273c8e36_s83d5725005 Log: =>> Building math/R-cran-NMF build started at Wed May 3 08:30:53 UTC 2023 port directory: /usr/ports/math/R-cran-NMF package name: R-cran-NMF-0.21.0_4 building for: FreeBSD main-amd64-default-job-01 14.0-CURRENT FreeBSD 14.0-CURRENT 1400088 amd64 maintained by: tota@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1400088 Job Id: 01 !!! Jail is newer than host. (Jail: 1400088, Host: 1400073) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400088 UNAME_v=FreeBSD 14.0-CURRENT 1400088 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-NMF/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-NMF/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-NMF/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-NMF/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-NMF/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin /objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/NMF OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/NMF" EXAMPLESDIR="share/examples/NMF" DATADIR="share/NMF" WWWDIR="www/NMF" ETCDIR="etc/NMF" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/NMF DOCSDIR=/usr/local/share/doc/NMF EXAMPLESDIR=/usr/local/share/examples/NMF WWWDIR=/usr/local/www/NMF ETCDIR=/usr/local/etc/NMF --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400088 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2+ accepted by the user =========================================================================== =================================================== ===> R-cran-NMF-0.21.0_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [main-amd64-default-job-01] Installing pkg-1.19.1_1... [main-amd64-default-job-01] Extracting pkg-1.19.1_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-NMF-0.21.0_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-NMF-0.21.0_4 for building =========================================================================== =================================================== ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-NMF-0.21.0_4 for building => SHA256 Checksum OK for NMF_0.21.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-NMF-0.21.0_4 for building ===> Extracting for R-cran-NMF-0.21.0_4 => SHA256 Checksum OK for NMF_0.21.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-NMF-0.21.0_4 =========================================================================== =================================================== ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-pkgmaker>=0.20 - not found ===> Installing existing package /packages/All/R-cran-pkgmaker-0.32.2_1.pkg [main-amd64-default-job-01] Installing R-cran-pkgmaker-0.32.2_1... [main-amd64-default-job-01] `-- Installing R-4.3.0... [main-amd64-default-job-01] | `-- Installing cairo-1.17.4_2,3... If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from ghostscript9-agpl-base-9.56.1_10: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-pkgmaker>=0.20 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-registry>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-rngtools>=1.2.3 - not found ===> Installing existing package /packages/All/R-cran-rngtools-1.5.2_1.pkg [main-amd64-default-job-01] Installing R-cran-rngtools-1.5.2_1... [main-amd64-default-job-01] Extracting R-cran-rngtools-1.5.2_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-rngtools>=1.2.3 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-stringr>=1.0.0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-digest>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-gridBase>0 - not found ===> Installing existing package /packages/All/R-cran-gridBase-0.4.7_5.pkg [main-amd64-default-job-01] Installing R-cran-gridBase-0.4.7_5... [main-amd64-default-job-01] Extracting R-cran-gridBase-0.4.7_5: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-gridBase>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-colorspace>0 - not found ===> Installing existing package /packages/All/R-cran-colorspace-2.0.3_1.pkg [main-amd64-default-job-01] Installing R-cran-colorspace-2.0.3_1... [main-amd64-default-job-01] Extracting R-cran-colorspace-2.0.3_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-colorspace>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-RColorBrewer>0 - not found ===> Installing existing package /packages/All/R-cran-RColorBrewer-1.1.3_1.pkg [main-amd64-default-job-01] Installing R-cran-RColorBrewer-1.1.3_1... [main-amd64-default-job-01] Extracting R-cran-RColorBrewer-1.1.3_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-RColorBrewer>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-foreach>0 - not found ===> Installing existing package /packages/All/R-cran-foreach-1.5.2_1.pkg [main-amd64-default-job-01] Installing R-cran-foreach-1.5.2_1... [main-amd64-default-job-01] `-- Installing R-cran-iterators-1.0.14_1... [main-amd64-default-job-01] `-- Extracting R-cran-iterators-1.0.14_1: .......... done [main-amd64-default-job-01] Extracting R-cran-foreach-1.5.2_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-foreach>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-doParallel>0 - not found ===> Installing existing package /packages/All/R-cran-doParallel-1.0.17_1.pkg [main-amd64-default-job-01] Installing R-cran-doParallel-1.0.17_1... [main-amd64-default-job-01] Extracting R-cran-doParallel-1.0.17_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-doParallel>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-ggplot2>0 - not found ===> Installing existing package /packages/All/R-cran-ggplot2-3.3.6_1.pkg [main-amd64-default-job-01] Installing R-cran-ggplot2-3.3.6_1... [main-amd64-default-job-01] `-- Installing R-cran-gtable-0.3.1_1... [main-amd64-default-job-01] `-- Extracting R-cran-gtable-0.3.1_1: .......... done [main-amd64-default-job-01] `-- Installing R-cran-isoband-0.2.5_1... [main-amd64-default-job-01] `-- Extracting R-cran-isoband-0.2.5_1: .......... done [main-amd64-default-job-01] `-- Installing R-cran-rlang-1.1.0_1... [main-amd64-default-job-01] `-- Extracting R-cran-rlang-1.1.0_1: .......... done [main-amd64-default-job-01] `-- Installing R-cran-scales-1.2.1_1... [main-amd64-default-job-01] | `-- Installing R-cran-R6-2.5.1_1... [main-amd64-default-job-01] | `-- Extracting R-cran-R6-2.5.1_1: .......... done [main-amd64-default-job-01] | `-- Installing R-cran-farver-2.1.1_1... [main-amd64-default-job-01] | `-- Extracting R-cran-farver-2.1.1_1: .......... done [main-amd64-default-job-01] | `-- Installing R-cran-labeling-0.4.2_1... [main-amd64-default-job-01] | `-- Extracting R-cran-labeling-0.4.2_1: .......... done [main-amd64-default-job-01] | `-- Installing R-cran-lifecycle-1.0.3_1... 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[main-amd64-default-job-01] | | `-- Extracting R-cran-utf8-1.2.2_1: .......... done [main-amd64-default-job-01] | | `-- Installing R-cran-vctrs-0.6.1_1... [main-amd64-default-job-01] | | `-- Extracting R-cran-vctrs-0.6.1_1: .......... done [main-amd64-default-job-01] | `-- Extracting R-cran-pillar-1.9.0: .......... done [main-amd64-default-job-01] | `-- Installing R-cran-pkgconfig-2.0.3_2... [main-amd64-default-job-01] | `-- Extracting R-cran-pkgconfig-2.0.3_2: .......... done [main-amd64-default-job-01] `-- Extracting R-cran-tibble-3.2.1_1: .......... done [main-amd64-default-job-01] Extracting R-cran-ggplot2-3.3.6_1: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-ggplot2>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-reshape2>0 - not found ===> Installing existing package /packages/All/R-cran-reshape2-1.4.4_2.pkg [main-amd64-default-job-01] Installing R-cran-reshape2-1.4.4_2... [main-amd64-default-job-01] `-- Installing R-cran-Rcpp-1.0.10_1... [main-amd64-default-job-01] `-- Extracting R-cran-Rcpp-1.0.10_1: .......... done [main-amd64-default-job-01] `-- Installing R-cran-plyr-1.8.7_1... [main-amd64-default-job-01] `-- Extracting R-cran-plyr-1.8.7_1: .......... done [main-amd64-default-job-01] Extracting R-cran-reshape2-1.4.4_2: .......... done ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-reshape2>0 - found ===> Returning to build of R-cran-NMF-0.21.0_4 ===> R-cran-NMF-0.21.0_4 depends on file: /usr/local/bin/R - found ===> R-cran-NMF-0.21.0_4 depends on executable: gfortran12 - found ===> R-cran-NMF-0.21.0_4 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for R-cran-NMF-0.21.0_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-pkgmaker>=0.20 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-registry>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-rngtools>=1.2.3 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-stringr>=1.0.0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-digest>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-gridBase>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-colorspace>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-RColorBrewer>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-foreach>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-doParallel>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-ggplot2>0 - found ===> R-cran-NMF-0.21.0_4 depends on package: R-cran-reshape2>0 - found ===> R-cran-NMF-0.21.0_4 depends on file: /usr/local/bin/R - found ===> R-cran-NMF-0.21.0_4 depends on executable: gfortran12 - found =========================================================================== =================================================== ===> Staging for R-cran-NMF-0.21.0_4 ===> Generating temporary packing list * installing *source* package 'NMF' ... ** package 'NMF' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)' using C++ compiler: 'FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)' gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-NMF/work/NMF/src' c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c distance.cpp -o distance.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c divergence.cpp -o divergence.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c euclidean.cpp -o euclidean.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c registerDynamicSymbol.c -o registerDynamicSymbol.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c utils.cpp -o utils.o utils.cpp:118:20: error: use of undeclared identifier 'DOUBLE_EPS' double eps = sqrt(DOUBLE_EPS); ^ 1 error generated. gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:198: utils.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-NMF/work/NMF/src' ERROR: compilation failed for package 'NMF' * removing '/wrkdirs/usr/ports/math/R-cran-NMF/work/stage/usr/local/lib/R/library/NMF' *** Error code 1 Stop. make: stopped in /usr/ports/math/R-cran-NMF