[package - 123i386-default][science/rmf] Failed for rmf-1.5.0 in build
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Date: Thu, 30 Mar 2023 08:19:52 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy5/data/123i386-default/a097efdbe2f4/logs/rmf-1.5.0.log
Build URL: https://pkg-status.freebsd.org/beefy5/build.html?mastername=123i386-default&build=a097efdbe2f4
Log:
=>> Building science/rmf
build started at Thu Mar 30 08:13:27 UTC 2023
port directory: /usr/ports/science/rmf
package name: rmf-1.5.0
building for: FreeBSD 123i386-default-job-05 12.3-RELEASE-p12 FreeBSD 12.3-RELEASE-p12 i386
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> rmf-1.5.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[123i386-default-job-05] Installing pkg-1.19.1_1...
[123i386-default-job-05] Extracting pkg-1.19.1_1: .......... done
===> rmf-1.5.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of rmf-1.5.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by rmf-1.5.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by rmf-1.5.0 for building
=> SHA256 Checksum OK for salilab-rmf-1.5.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by rmf-1.5.0 for building
===> Extracting for rmf-1.5.0
=> SHA256 Checksum OK for salilab-rmf-1.5.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for rmf-1.5.0
===> Applying FreeBSD patches for rmf-1.5.0 from /usr/ports/science/rmf/files
===========================================================================
=======================<phase: build-depends >============================
===> rmf-1.5.0 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.25.1.pkg
[123i386-default-job-05] Installing cmake-core-3.25.1...
[123i386-default-job-05] `-- Installing expat-2.5.0...
[123i386-default-job-05] `-- Extracting expat-2.5.0: .......... done
[123i386-default-job-05] `-- Installing jsoncpp-1.9.5...
[123i386-default-job-05] `-- Extracting jsoncpp-1.9.5: .......... done
[123i386-default-job-05] `-- Installing libuv-1.44.2...
[123i386-default-job-05] `-- Extracting libuv-1.44.2: .......... done
[123i386-default-job-05] `-- Installing rhash-1.4.3...
[123i386-default-job-05] | `-- Installing gettext-runtime-0.21.1...
<snip>
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-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
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The cmake-policies(7) manual explains that the OLD behaviors of all
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/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1513 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2124 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:53 (find_package)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found Boost: /usr/local/include (found version "1.81.0") found components: system filesystem thread program_options iostreams chrono atomic regex
-- Found HDF5: hdf5-shared (found version "1.12.2")
-- HDF5 C compiler wrapper is unable to compile a minimal HDF5 program.
-- Found HDF5: /usr/local/lib/libhdf5.so (found suitable version "1.12.2", minimum required is "1.8")
-- Deprecated backends (and hdf5) are enabled
-- clang version: 10.0.1
-- Enabling clang C++17 support
-- Running Making RMF/HDF5.h
-- Updating /wrkdirs/usr/ports/science/rmf/work/.build/include/RMF/HDF5.h
-- Running Making RMF.h
-- Updating /wrkdirs/usr/ports/science/rmf/work/.build/include/RMF.h
-- Running setup_cmake.py
-- Running Running setup_cmake.py
-- Updating ./bin/Files.cmake
Updating ./examples/Files.cmake
Updating ./benchmark/Files.cmake
Updating ./tools/dev_tools/test/Files.cmake
Updating ./src/Files.cmake
Updating ./test/Files.cmake
-- Logging disabled
-- Using VMD headers found in /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/plugins/vmd/include
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
Python_ADDITIONAL_VERSIONS
-- Build files have been written to: /wrkdirs/usr/ports/science/rmf/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for rmf-1.5.0
[ 1% 1/94] cd /wrkdirs/usr/ports/science/rmf/work/.build && /wrkdirs/usr/ports/science/rmf/work/.bin/python /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/tools/build/make_decorators.py
[ 2% 2/94] cd /wrkdirs/usr/ports/science/rmf/work/.build/src && /wrkdirs/usr/ports/science/rmf/work/.bin/python /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/tools/build/make-embed.py /wrkdirs/usr/ports/science/rmf/work/.build/src/generated/ /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/avrocpp/examples/cpx.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/avrocpp/examples/imaginary.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/avro/Frame.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_avro/All.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_avro/Data.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_avro/File.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_avro/Frame.json /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_avro/Nodes.json
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/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/avro/traits.cpp:523:10: warning: local variable 'ret' will be copied despite being returned by name [-Wreturn-std-move]
return ret;
^~~
/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/avro/traits.cpp:523:10: note: call 'std::move' explicitly to avoid copying
return ret;
^~~
std::move(ret)
1 warning generated.
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[ 25% 24/94] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/avrocpp/api -I/wrkdirs/usr/ports/science/rmf/work/.build/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/include -I/wrkdirs/usr/ports/science/rmf/work/.build/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC --std=c++17 -MD -MT src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o -MF src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_hdf5/HDF5SharedData.cpp
FAILED: src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o
/usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/avrocpp/api -I/wrkdirs/usr/ports/science/rmf/work/.build/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/include -I/wrkdirs/usr/ports/science/rmf/work/.build/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC --std=c++17 -MD -MT src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o -MF src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/HDF5SharedData.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_hdf5/HDF5SharedData.cpp
In file included from /wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/src/backend/deprecated_hdf5/HDF5SharedData.cpp:10:
In file included from /usr/include/c++/v1/algorithm:643:
/usr/include/c++/v1/memory:3556:7: error: exception specification of overriding function is more lax than base version
class __shared_ptr_emplace
^
/usr/include/c++/v1/memory:4402:26: note: in instantiation of template class 'std::__1::__shared_ptr_emplace<RMF::HDF5::SharedHandle, std::__1::allocator<RMF::HDF5::SharedHandle> >' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/include/RMF/HDF5/ConstDataSetD.h:113:18: note: in instantiation of function template specialization 'std::__1::make_shared<RMF::HDF5::SharedHandle, long long, int (*)(long long), std::__1::basic_string<char> &>' requested here
P::open(std::make_shared<SharedHandle>(
^
/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/include/RMF/HDF5/ConstGroup.h:57:14: note: in instantiation of member function 'RMF::HDF5::ConstDataSetD<RMF::HDF5::IntTraits, 1>::ConstDataSetD' requested here
return ConstDataSetD<TypeTraits, D>(get_shared_handle(), name, props);
^
/wrkdirs/usr/ports/science/rmf/work/rmf-1.5.0/include/RMF/HDF5/ConstGroup.h:86:27: note: in instantiation of function template specialization 'RMF::HDF5::ConstGroup::get_child_data_set<RMF::HDF5::IntTraits, 1>' requested here
RMF_HDF5_FOREACH_TYPE(RMF_HDF5_DATA_SET_CONST_METHODS);
^
/usr/include/c++/v1/memory:3465:13: note: overridden virtual function is here
virtual ~__shared_weak_count();
^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/rmf