[package - main-i386-default][math/py-fastcluster] Failed for py39-fastcluster-1.2.6 in build
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Date: Wed, 08 Mar 2023 03:17:13 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/peacac0805609_s08e66b7a37/logs/py39-fastcluster-1.2.6.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=peacac0805609_s08e66b7a37
Log:
=>> Building math/py-fastcluster
build started at Wed Mar 8 03:17:05 UTC 2023
port directory: /usr/ports/math/py-fastcluster
package name: py39-fastcluster-1.2.6
building for: FreeBSD main-i386-default-job-06 14.0-CURRENT FreeBSD 14.0-CURRENT 1400081 i386
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400081
Job Id: 06
!!! Jail is newer than host. (Jail: 1400081, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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sunpoet@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-i386-default-job-06] Installing pkg-1.19.1_1...
[main-i386-default-job-06] Extracting pkg-1.19.1_1: .......... done
===> py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===> Extracting for py39-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends >============================
===> py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.24.1,1.pkg
[main-i386-default-job-06] Installing py39-numpy-1.24.1,1...
[main-i386-default-job-06] `-- Installing gcc12-12.2.0_5...
[main-i386-default-job-06] | `-- Installing binutils-2.40,1...
[main-i386-default-job-06] | | `-- Installing gettext-runtime-0.21.1...
[main-i386-default-job-06] | | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-06] | | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-06] | | `-- Extracting gettext-runtime-0.21.1: .......... done
[main-i386-default-job-06] | | `-- Installing zstd-1.5.2_1...
[main-i386-default-job-06] | | `-- Installing liblz4-1.9.4,1...
[main-i386-default-job-06] | | `-- Extracting liblz4-1.9.4,1: .......... done
[main-i386-default-job-06] | | `-- Extracting zstd-1.5.2_1: .......... done
[main-i386-default-job-06] | `-- Extracting binutils-2.40,1: .......... done
[main-i386-default-job-06] | `-- Installing gmp-6.2.1...
[main-i386-default-job-06] | `-- Extracting gmp-6.2.1: .......... done
[main-i386-default-job-06] | `-- Installing mpc-1.2.1...
[main-i386-default-job-06] | | `-- Installing mpfr-4.2.0,1...
[main-i386-default-job-06] | | `-- Extracting mpfr-4.2.0,1: .......... done
[main-i386-default-job-06] | `-- Extracting mpc-1.2.1: ......... done
[main-i386-default-job-06] `-- Extracting gcc12-12.2.0_5: .......... done
[main-i386-default-job-06] `-- Installing openblas-0.3.20,1...
[main-i386-default-job-06] `-- Extracting openblas-0.3.20,1: .......... done
[main-i386-default-job-06] `-- Installing py39-setuptools-63.1.0...
[main-i386-default-job-06] | `-- Installing python39-3.9.16_2...
[main-i386-default-job-06] | | `-- Installing libffi-3.4.4...
[main-i386-default-job-06] | | `-- Extracting libffi-3.4.4: .......... done
[main-i386-default-job-06] | | `-- Installing mpdecimal-2.5.1...
[main-i386-default-job-06] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-i386-default-job-06] | | `-- Installing readline-8.2.0...
[main-i386-default-job-06] | | `-- Extracting readline-8.2.0: .......... done
[main-i386-default-job-06] | `-- Extracting python39-3.9.16_2: .......... done
[main-i386-default-job-06] `-- Extracting py39-setuptools-63.1.0: .......... done
[main-i386-default-job-06] `-- Installing suitesparse-umfpack-6.1.0...
[main-i386-default-job-06] | `-- Installing metis-5.1.0_9...
[main-i386-default-job-06] | `-- Extracting metis-5.1.0_9: .......... done
[main-i386-default-job-06] | `-- Installing suitesparse-amd-3.0.3...
[main-i386-default-job-06] | | `-- Installing suitesparse-config-7.0.1...
[main-i386-default-job-06] | | `-- Extracting suitesparse-config-7.0.1: .......... done
[main-i386-default-job-06] | `-- Extracting suitesparse-amd-3.0.3: .......... done
[main-i386-default-job-06] | `-- Installing suitesparse-camd-3.0.3...
[main-i386-default-job-06] | `-- Extracting suitesparse-camd-3.0.3: .......... done
[main-i386-default-job-06] | `-- Installing suitesparse-ccolamd-3.0.3...
[main-i386-default-job-06] | `-- Extracting suitesparse-ccolamd-3.0.3: .......... done
[main-i386-default-job-06] | `-- Installing suitesparse-cholmod-4.0.3...
[main-i386-default-job-06] | | `-- Installing suitesparse-colamd-3.0.3...
[main-i386-default-job-06] | | `-- Extracting suitesparse-colamd-3.0.3: .......... done
[main-i386-default-job-06] | `-- Extracting suitesparse-cholmod-4.0.3: .......... done
[main-i386-default-job-06] `-- Extracting suitesparse-umfpack-6.1.0: .......... done
[main-i386-default-job-06] Extracting py39-numpy-1.24.1,1: .......... done
=====
Message from gcc12-12.2.0_5:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.16_2:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - found
===> Returning to build of py39-fastcluster-1.2.6
===> py39-fastcluster-1.2.6 depends on package: py39-setuptools>=63.1.0 - found
===> py39-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Feb 28 2023, 01:31:37)
[Clang 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdc
running config
===========================================================================
=======================<phase: build >============================
===> Building for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Feb 28 2023, 01:31:37)
[Clang 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdc
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-i386-cpython-39
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-i386-cpython-39
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-i386-cpython-39
creating build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-i386/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/__memory/temporary_buffer.h:28:1: Generating code for declaration 'std::get_temporary_buffer'
4. /usr/include/c++/v1/__memory/temporary_buffer.h:37:5: LLVM IR generation of compound statement ('{}')
#0 0x05130304 (/usr/bin/cc+0x5130304)
#1 0x05130770 (/usr/bin/cc+0x5130770)
#2 0x0512e58e (/usr/bin/cc+0x512e58e)
#3 0x050d7f34 (/usr/bin/cc+0x50d7f34)
#4 0x050d8104 (/usr/bin/cc+0x50d8104)
#5 0x269843a9 (/lib/libthr.so.3+0x183a9)
#6 0x26983879 (/lib/libthr.so.3+0x17879)
#7 0xffffe234 ([vdso]+0x234)
#8 0x26c0902f thr_kill (/lib/libc.so.7+0x12002f)
#9 0x26b8756b raise (/lib/libc.so.7+0x9e56b)
#10 0x26c31bcb abort (/lib/libc.so.7+0x148bcb)
#11 0x26b6bf3c (/lib/libc.so.7+0x82f3c)
#12 0x028c87c8 (/usr/bin/cc+0x28c87c8)
#13 0x028c8356 (/usr/bin/cc+0x28c8356)
#14 0x028a00a6 (/usr/bin/cc+0x28a00a6)
#15 0x028d3f90 (/usr/bin/cc+0x28d3f90)
#16 0x028e3389 (/usr/bin/cc+0x28e3389)
#17 0x028e24bd (/usr/bin/cc+0x28e24bd)
#18 0x028e2b97 (/usr/bin/cc+0x28e2b97)
#19 0x028e22cb (/usr/bin/cc+0x28e22cb)
#20 0x028e4260 (/usr/bin/cc+0x28e4260)
#21 0x028e282a (/usr/bin/cc+0x28e282a)
#22 0x028ee05f (/usr/bin/cc+0x28ee05f)
#23 0x028d2324 (/usr/bin/cc+0x28d2324)
#24 0x028d2e36 (/usr/bin/cc+0x28d2e36)
#25 0x023ea9e5 (/usr/bin/cc+0x23ea9e5)
#26 0x023e31ba (/usr/bin/cc+0x23e31ba)
#27 0x023d5860 (/usr/bin/cc+0x23d5860)
#28 0x023d5889 (/usr/bin/cc+0x23d5889)
#29 0x023d5889 (/usr/bin/cc+0x23d5889)
#30 0x023d5889 (/usr/bin/cc+0x23d5889)
#31 0x023d5889 (/usr/bin/cc+0x23d5889)
#32 0x023d5889 (/usr/bin/cc+0x23d5889)
#33 0x023d5889 (/usr/bin/cc+0x23d5889)
#34 0x023d5889 (/usr/bin/cc+0x23d5889)
#35 0x023d307d (/usr/bin/cc+0x23d307d)
#36 0x02f8744c (/usr/bin/cc+0x2f8744c)
#37 0x02f8475d (/usr/bin/cc+0x2f8475d)
#38 0x034a3539 (/usr/bin/cc+0x34a3539)
#39 0x02ec2064 (/usr/bin/cc+0x2ec2064)
#40 0x02f82cf9 (/usr/bin/cc+0x2f82cf9)
#41 0x02ec195a (/usr/bin/cc+0x2ec195a)
#42 0x02e4775e (/usr/bin/cc+0x2e4775e)
#43 0x02f76db3 (/usr/bin/cc+0x2f76db3)
#44 0x0237bec6 (/usr/bin/cc+0x237bec6)
#45 0x0238a3f9 (/usr/bin/cc+0x238a3f9)
#46 0x02cec903 (/usr/bin/cc+0x2cec903)
#47 0x050d7e62 (/usr/bin/cc+0x50d7e62)
#48 0x02cec57f (/usr/bin/cc+0x2cec57f)
#49 0x02cb4d6f (/usr/bin/cc+0x2cb4d6f)
#50 0x02cb5033 (/usr/bin/cc+0x2cb5033)
#51 0x02ccd76b (/usr/bin/cc+0x2ccd76b)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)
Target: i386-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-546e89.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-546e89.sh
cc: note: diagnostic msg:
********************
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster