[package - 131releng-armv7-default][biology/py-pysam] Failed for py39-pysam-0.20.0 in build
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Date: Fri, 03 Mar 2023 03:52:31 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/d0f8db852755/logs/py39-pysam-0.20.0.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=d0f8db852755
Log:
=>> Building biology/py-pysam
build started at Fri Mar 3 03:50:48 UTC 2023
port directory: /usr/ports/biology/py-pysam
package name: py39-pysam-0.20.0
building for: FreeBSD 131releng-armv7-default-job-03 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm
maintained by: yuri@FreeBSD.org
Makefile ident:
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-pysam-0.20.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131releng-armv7-default-job-03] Installing pkg-1.19.1_1...
[131releng-armv7-default-job-03] Extracting pkg-1.19.1_1: .......... done
===> py39-pysam-0.20.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-pysam-0.20.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py39-pysam-0.20.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py39-pysam-0.20.0 for building
=> SHA256 Checksum OK for pysam-0.20.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py39-pysam-0.20.0 for building
===> Extracting for py39-pysam-0.20.0
=> SHA256 Checksum OK for pysam-0.20.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-pysam-0.20.0
===> Applying FreeBSD patches for py39-pysam-0.20.0 from /usr/ports/biology/py-pysam/files
===========================================================================
=======================<phase: build-depends >============================
===> py39-pysam-0.20.0 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[131releng-armv7-default-job-03] Installing gmake-4.3_2...
[131releng-armv7-default-job-03] `-- Installing gettext-runtime-0.21.1...
[131releng-armv7-default-job-03] | `-- Installing indexinfo-0.3.1...
[131releng-armv7-default-job-03] | `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-default-job-03] `-- Extracting gettext-runtime-0.21.1: .......... done
[131releng-armv7-default-job-03] Extracting gmake-4.3_2: .......... done
===> py39-pysam-0.20.0 depends on package: gmake>=4.3 - found
===> Returning to build of py39-pysam-0.20.0
===> py39-pysam-0.20.0 depends on executable: cython-3.9 - not found
===> Installing existing package /packages/All/py39-cython-0.29.33.pkg
[131releng-armv7-default-job-03] Installing py39-cython-0.29.33...
[131releng-armv7-default-job-03] `-- Installing py39-setuptools-63.1.0...
[131releng-armv7-default-job-03] | `-- Installing python39-3.9.16_1...
<snip>
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c
cc -Wall -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c
htscodecs/htscodecs/rANS_static32x16pr_neon.c:199:31: warning: implicit declaration of function 'vtrn1q_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:199:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:200:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C1_1 = vtrn1q_u32(C_1, D_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:201:31: warning: implicit declaration of function 'vtrn2q_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:201:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:202:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C2_1 = vtrn2q_u32(C_1, D_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:206:39: warning: implicit declaration of function 'vtrn1q_u64' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:206:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:39: warning: implicit declaration of function 'vtrn2q_u64' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:208:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t RFv1 =u32_u64(vtrn1q_u64(u64_u32(A2_1),u64_u32(C2_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:209:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t FSv1 =u32_u64(vtrn2q_u64(u64_u32(A2_1),u64_u32(C2_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:216:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A1_2 = vtrn1q_u32(A_2, B_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:217:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C1_2 = vtrn1q_u32(C_2, D_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:218:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A2_2 = vtrn2q_u32(A_2, B_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:219:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C2_2 = vtrn2q_u32(C_2, D_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:221:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Xmaxv2=u32_u64(vtrn1q_u64(u64_u32(A1_2),u64_u32(C1_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:222:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Biasv2=u32_u64(vtrn2q_u64(u64_u32(A1_2),u64_u32(C1_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:223:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t RFv2 =u32_u64(vtrn1q_u64(u64_u32(A2_2),u64_u32(C2_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:224:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t FSv2 =u32_u64(vtrn2q_u64(u64_u32(A2_2),u64_u32(C2_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:231:31: warning: implicit declaration of function 'vaddvq_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32_t imask1 = vaddvq_u32(vandq_u32(Cv1, bit));
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:236:21: warning: implicit declaration of function 'vqtbl1_u8' is invalid in C99 [-Wimplicit-function-declaration]
norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:236:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:237:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
norm2 = vqtbl1_u8(vreinterpretq_u8_u32(Rv2),vtab[imask2]);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:263:31: warning: implicit declaration of function 'vmull_high_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:263:24: error: initializing 'uint64x2_t' (vector of 2 'uint64_t' values) with an expression of incompatible type 'int'
uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
7 warnings and 20 errors generated.
make[1]: *** [Makefile:173: htscodecs/htscodecs/rANS_static32x16pr_neon.o] Error 1
make[1]: Leaving directory '/wrkdirs/usr/ports/biology/py-pysam/work-py39/pysam-0.20.0/htslib'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 631, in <module>
dist = setup(**metadata)
File "/usr/local/lib/python3.9/site-packages/setuptools/__init__.py", line 87, in setup
return distutils.core.setup(**attrs)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 177, in setup
return run_commands(dist)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 193, in run_commands
dist.run_commands()
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 968, in run_commands
self.run_command(cmd)
File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
cmd_obj.run()
File "setup.py", line 258, in run
build.run(self)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run
self.run_command(cmd_name)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 317, in run_command
self.distribution.run_command(command)
File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
cmd_obj.run()
File "/usr/local/lib/python3.9/site-packages/Cython/Distutils/old_build_ext.py", line 186, in run
_build_ext.build_ext.run(self)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 339, in run
self.build_extensions()
File "/usr/local/lib/python3.9/site-packages/Cython/Distutils/old_build_ext.py", line 195, in build_extensions
_build_ext.build_ext.build_extensions(self)
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 459, in build_extensions
self._build_extensions_serial()
File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 485, in _build_extensions_serial
self.build_extension(ext)
File "/wrkdirs/usr/ports/biology/py-pysam/work-py39/pysam-0.20.0/cy_build.py", line 88, in build_extension
ext._prebuild_func(ext, self.force)
File "setup.py", line 516, in prebuild_libchtslib
run_make(["ALL_CPPFLAGS=-I. " + args + " $(CPPFLAGS)", "lib-static"])
File "setup.py", line 75, in run_make
subprocess.check_call([os.environ.get("MAKE", "make")] + targets)
File "/usr/local/lib/python3.9/subprocess.py", line 373, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', 'ALL_CPPFLAGS=-I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement $(CPPFLAGS)', 'lib-static']' returned non-zero exit status 2.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/py-pysam