[package - 131releng-armv7-default][biology/salmon] Failed for salmon-1.10.2 in build
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Date: Fri, 28 Jul 2023 06:22:21 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/150bed43bfd4/logs/salmon-1.10.2.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=150bed43bfd4
Log:
=>> Building biology/salmon
build started at Fri Jul 28 06:21:11 UTC 2023
port directory: /usr/ports/biology/salmon
package name: salmon-1.10.2
building for: FreeBSD 131releng-armv7-default-job-04 13.1-RELEASE-p8 FreeBSD 13.1-RELEASE-p8 1301000 arm
maintained by: jwb@FreeBSD.org
Makefile ident:
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Jail OSVERSION: 1301000
Job Id: 04
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jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> salmon-1.10.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.4.pkg
[131releng-armv7-default-job-04] Installing pkg-1.20.4...
[131releng-armv7-default-job-04] Extracting pkg-1.20.4: .......... done
===> salmon-1.10.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of salmon-1.10.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by salmon-1.10.2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by salmon-1.10.2 for building
=> SHA256 Checksum OK for COMBINE-lab-salmon-v1.10.2_GH0.tar.gz.
=> SHA256 Checksum OK for COMBINE-lab-pufferfish-salmon-v1.10.2_GH0.tar.gz.
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-15_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htscodecs-5aecc6e_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by salmon-1.10.2 for building
===> Extracting for salmon-1.10.2
=> SHA256 Checksum OK for COMBINE-lab-salmon-v1.10.2_GH0.tar.gz.
=> SHA256 Checksum OK for COMBINE-lab-pufferfish-salmon-v1.10.2_GH0.tar.gz.
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-15_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htscodecs-5aecc6e_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for salmon-1.10.2
===> Applying FreeBSD patches for salmon-1.10.2 from /usr/ports/biology/salmon/files
===========================================================================
=======================<phase: build-depends >============================
===> salmon-1.10.2 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.2.15.pkg
[131releng-armv7-default-job-04] Installing bash-5.2.15...
[131releng-armv7-default-job-04] `-- Installing gettext-runtime-0.22_1...
[131releng-armv7-default-job-04] | `-- Installing indexinfo-0.3.1...
[131releng-armv7-default-job-04] | `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-default-job-04] `-- Extracting gettext-runtime-0.22_1: .......... done
[131releng-armv7-default-job-04] `-- Installing readline-8.2.1...
[131releng-armv7-default-job-04] `-- Extracting readline-8.2.1: .......... done
<snip>
[ 9%] Performing build step for 'libstadenio'
cd /wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib && gmake CC=/usr/bin/cc CXX=/usr/bin/c++ CFLAGS+= CFLAGS+= LDFLAGS+= CFLAGS+= CFLAGS+= CFLAGS+=
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib'
gmake all-recursive
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib'
Making all in htscodecs
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs'
gmake all-recursive
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs'
Making all in htscodecs
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs/htscodecs'
Update version.h: #define HTSCODECS_VERSION_TEXT "1.5.0"
gmake all-am
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs/htscodecs'
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT pack.lo -MD -MP -MF .deps/pack.Tpo -c -o pack.lo pack.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT pack.lo -MD -MP -MF .deps/pack.Tpo -c pack.c -fPIC -DPIC -o pack.o
mv -f .deps/pack.Tpo .deps/pack.Plo
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rle.lo -MD -MP -MF .deps/rle.Tpo -c -o rle.lo rle.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rle.lo -MD -MP -MF .deps/rle.Tpo -c rle.c -fPIC -DPIC -o rle.o
mv -f .deps/rle.Tpo .deps/rle.Plo
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT fqzcomp_qual.lo -MD -MP -MF .deps/fqzcomp_qual.Tpo -c -o fqzcomp_qual.lo fqzcomp_qual.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT fqzcomp_qual.lo -MD -MP -MF .deps/fqzcomp_qual.Tpo -c fqzcomp_qual.c -fPIC -DPIC -o fqzcomp_qual.o
mv -f .deps/fqzcomp_qual.Tpo .deps/fqzcomp_qual.Plo
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static.lo -MD -MP -MF .deps/rANS_static.Tpo -c -o rANS_static.lo rANS_static.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static.lo -MD -MP -MF .deps/rANS_static.Tpo -c rANS_static.c -fPIC -DPIC -o rANS_static.o
mv -f .deps/rANS_static.Tpo .deps/rANS_static.Plo
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static4x16pr.lo -MD -MP -MF .deps/rANS_static4x16pr.Tpo -c -o rANS_static4x16pr.lo rANS_static4x16pr.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static4x16pr.lo -MD -MP -MF .deps/rANS_static4x16pr.Tpo -c rANS_static4x16pr.c -fPIC -DPIC -o rANS_static4x16pr.o
mv -f .deps/rANS_static4x16pr.Tpo .deps/rANS_static4x16pr.Plo
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static32x16pr.lo -MD -MP -MF .deps/rANS_static32x16pr.Tpo -c -o rANS_static32x16pr.lo rANS_static32x16pr.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static32x16pr.lo -MD -MP -MF .deps/rANS_static32x16pr.Tpo -c rANS_static32x16pr.c -fPIC -DPIC -o rANS_static32x16pr.o
mv -f .deps/rANS_static32x16pr.Tpo .deps/rANS_static32x16pr.Plo
/bin/sh ../libtool --tag=CC --mode=compile /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static32x16pr_neon.lo -MD -MP -MF .deps/rANS_static32x16pr_neon.Tpo -c -o rANS_static32x16pr_neon.lo rANS_static32x16pr_neon.c
libtool: compile: /usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT rANS_static32x16pr_neon.lo -MD -MP -MF .deps/rANS_static32x16pr_neon.Tpo -c rANS_static32x16pr_neon.c -fPIC -DPIC -o rANS_static32x16pr_neon.o
rANS_static32x16pr_neon.c:200:31: warning: implicit declaration of function 'vtrn1q_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
^
rANS_static32x16pr_neon.c:200:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:201:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C1_1 = vtrn1q_u32(C_1, D_1);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:202:31: warning: implicit declaration of function 'vtrn2q_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
^
rANS_static32x16pr_neon.c:202:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:203:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C2_1 = vtrn2q_u32(C_1, D_1);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:207:39: warning: implicit declaration of function 'vtrn1q_u64' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^
rANS_static32x16pr_neon.c:207:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:208:39: warning: implicit declaration of function 'vtrn2q_u64' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^
rANS_static32x16pr_neon.c:208:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:209:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t RFv1 =u32_u64(vtrn1q_u64(u64_u32(A2_1),u64_u32(C2_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:210:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t FSv1 =u32_u64(vtrn2q_u64(u64_u32(A2_1),u64_u32(C2_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:217:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A1_2 = vtrn1q_u32(A_2, B_2);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:218:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C1_2 = vtrn1q_u32(C_2, D_2);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:219:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A2_2 = vtrn2q_u32(A_2, B_2);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:220:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C2_2 = vtrn2q_u32(C_2, D_2);
^ ~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:222:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Xmaxv2=u32_u64(vtrn1q_u64(u64_u32(A1_2),u64_u32(C1_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:223:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Biasv2=u32_u64(vtrn2q_u64(u64_u32(A1_2),u64_u32(C1_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:224:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t RFv2 =u32_u64(vtrn1q_u64(u64_u32(A2_2),u64_u32(C2_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:225:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t FSv2 =u32_u64(vtrn2q_u64(u64_u32(A2_2),u64_u32(C2_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
rANS_static32x16pr_neon.c:232:31: warning: implicit declaration of function 'vaddvq_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32_t imask1 = vaddvq_u32(vandq_u32(Cv1, bit));
^
rANS_static32x16pr_neon.c:237:21: warning: implicit declaration of function 'vqtbl1_u8' is invalid in C99 [-Wimplicit-function-declaration]
norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
^
rANS_static32x16pr_neon.c:237:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:238:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
norm2 = vqtbl1_u8(vreinterpretq_u8_u32(Rv2),vtab[imask2]);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rANS_static32x16pr_neon.c:264:31: warning: implicit declaration of function 'vmull_high_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
^
rANS_static32x16pr_neon.c:264:24: error: initializing 'uint64x2_t' (vector of 2 'uint64_t' values) with an expression of incompatible type 'int'
uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
7 warnings and 20 errors generated.
gmake[9]: *** [Makefile:716: rANS_static32x16pr_neon.lo] Error 1
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs/htscodecs'
gmake[8]: *** [Makefile:548: all] Error 2
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs/htscodecs'
gmake[7]: *** [Makefile:515: all-recursive] Error 1
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs'
gmake[6]: *** [Makefile:423: all] Error 2
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib/htscodecs'
gmake[5]: *** [Makefile:759: all-recursive] Error 1
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/staden-io_lib'
gmake[4]: *** [Makefile:504: all] Error 2
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gmake[3]: *** [CMakeFiles/libstadenio.dir/build.make:89: libstadenio-prefix/src/libstadenio-stamp/libstadenio-build] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/.build'
gmake[2]: *** [CMakeFiles/Makefile2:222: CMakeFiles/libstadenio.dir/all] Error 2
gmake[2]: *** Waiting for unfinished jobs....
[ 10%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o
cd /wrkdirs/usr/ports/biology/salmon/work/.build/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++ -I/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/pufferfish/external/twopaco/graphdump/../common -I/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/pufferfish/external/twopaco/graphdump/. -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/pufferfish/external/twopaco/common/dnachar.cpp
4 warnings generated.
[ 11%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o
cd /wrkdirs/usr/ports/biology/salmon/work/.build/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++ -I/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/pufferfish/external/twopaco/graphdump/../common -I/wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/pufferfish/external/twopaco/graphdump/. -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -g -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /wrkdirs/usr/ports/biology/salmon/work/salmon-1.10.2/external/pufferfish/external/twopaco/common/streamfastaparser.cpp
[ 12%] Linking CXX static library libgraphdump.a
cd /wrkdirs/usr/ports/biology/salmon/work/.build/external/pufferfish/external/twopaco/graphdump && /usr/local/bin/cmake -P CMakeFiles/graphdump.dir/cmake_clean_target.cmake
cd /wrkdirs/usr/ports/biology/salmon/work/.build/external/pufferfish/external/twopaco/graphdump && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1
/usr/bin/llvm-ar qc libgraphdump.a CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o
/usr/bin/llvm-ranlib libgraphdump.a
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[ 12%] Built target graphdump
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/.build'
gmake[1]: *** [Makefile:169: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/salmon/work/.build'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/salmon