From nobody Thu Jul 27 11:38:01 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RBTKQ1cKkz4p2kJ for ; Thu, 27 Jul 2023 11:38:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RBTKQ00XQz3JYQ for ; Thu, 27 Jul 2023 11:38:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690457882; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=ob98spziXwHqNqKDr52Iz8xxHwa9MuKBc++M7ZvGSow=; b=CIapYcPeGYNV/Gr88hfDSTzrVnIsvZk7gZg94g0pOWUbslYvEVNh8d8aD0vnZupyejsVZT 90mxb6WwD6F7YkMszGgIVmlVI6pDtIuiHr1cjZ0KXaIDIRXaigpNzSSJf/8rh8tYIV7fgv sSTDXoTqCZcJJvHK8hiudRTQpQgvDDLFnXHi2CBmQibF4E7BgoGzGkDcRV6Ot2xYtcC674 oE8Ffy/Q6MS0HRf9SiKrImiUTFDYugcNGRQHYoxt2m788wJJknHoLtKuhuBxKZoR8ohHGu TXBKrfj24afWiaj5YriVLNPJAG+do9CeyUeYHgdbK/LBa/mNYd65UMttO7Nvww== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1690457882; a=rsa-sha256; cv=none; b=X8ievZqTcjmG4O3iuNixtVe+mxM0e/ZsV1QVzhCKkKLMu4sO3rBnd+TFnDL6EpJ9IIfrPC st2LcRDBuDvbEDPNlzCYViaBueqw7xntS7QT9ZZEbnam5SjZ7pdApXbLDVqjKqEijE48i3 qdEq1wdbBtctI7ybcymlx/siNSNO4YCtbUKzMFB4yoir4qFzD+CCSl4OGD0DMTOcpOsiaX L5h5+c/rQSDJ7Xrl8yi7hsw+NxP8Zxw/nxZdYZrwMEdnJFT+0IaxHLGRngDJltsmkrVff6 Wq1PGqD5umS3aq53VOpLKwBwOdlVbXzohhNnrq7mbSAS5SlnxNXOjaGtPUgB3w== Received: from beefy17.nyi.freebsd.org (beefy17.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:20]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4RBTKP65dWz1MkG for ; Thu, 27 Jul 2023 11:38:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 30dc by beefy17.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy17.nyi.freebsd.org); Thu, 27 Jul 2023 11:38:01 +0000 To: yuri@FreeBSD.org Subject: [package - main-i386-default][biology/seqwish] Failed for seqwish-0.7.9 in build Cc: pkg-fallout@FreeBSD.org Date: Thu, 27 Jul 2023 11:38:01 +0000 Message-Id: <64c25719.30dc.a9a7882@beefy17.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p5cfda4f9e5a4_s474708c334/logs/seqwish-0.7.9.log Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p5cfda4f9e5a4_s474708c334 Log: =>> Building biology/seqwish build started at Thu Jul 27 11:36:46 UTC 2023 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.9 building for: FreeBSD main-i386-default-job-10 14.0-CURRENT FreeBSD 14.0-CURRENT 1400093 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400093 Job Id: 10 !!! Jail is newer than host. (Jail: 1400093, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=i386 UNAME_m=i386 OSVERSION=1400093 UNAME_v=FreeBSD 14.0-CURRENT 1400093 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.9: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_ INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400093 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License MIT accepted by the user =========================================================================== =================================================== ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.4.pkg [main-i386-default-job-10] Installing pkg-1.20.4... [main-i386-default-job-10] Extracting pkg-1.20.4: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building ===> Extracting for seqwish-0.7.9 => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for seqwish-0.7.9 /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/tempfile.cpp.o -MF CMakeFiles/seqwish.dir/src/tempfile.cpp.o.d -o 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-I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/utils.cpp.o -MF CMakeFiles/seqwish.dir/src/utils.cpp.o.d -o CMakeFiles/seqwish.dir/src/utils.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/utils.cpp --- CMakeFiles/seqwish.dir/src/main.cpp.o --- [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/main.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong 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-I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/seqindex.cpp.o -MF CMakeFiles/seqwish.dir/src/seqindex.cpp.o.d -o CMakeFiles/seqwish.dir/src/seqindex.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.cpp --- CMakeFiles/seqwish.dir/src/main.cpp.o --- In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp:8: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src/mmmultimap.hpp:21: In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/bit_vectors.hpp:8: In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/int_vector.hpp:24: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/bits.hpp:331:28: error: use of undeclared identifier '_pdep_u64'; did you mean '_pdep_u32'? return __builtin_ctzll(_pdep_u64(1ull << (i-1), x)); ^~~~~~~~~ _pdep_u32 /usr/lib/clang/16/include/bmi2intrin.h:27:1: note: '_pdep_u32' declared here _pdep_u32(unsigned int __X, unsigned int __Y) ^ --- CMakeFiles/seqwish.dir/src/seqindex.cpp.o --- In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.hpp:10: In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/bit_vectors.hpp:8: In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/int_vector.hpp:24: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/bits.hpp:331:28: error: use of undeclared identifier '_pdep_u64'; did you mean '_pdep_u32'? return __builtin_ctzll(_pdep_u64(1ull << (i-1), x)); ^~~~~~~~~ _pdep_u32 /usr/lib/clang/16/include/bmi2intrin.h:27:1: note: '_pdep_u32' declared here _pdep_u32(unsigned int __X, unsigned int __Y) ^ --- CMakeFiles/seqwish.dir/src/main.cpp.o --- In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp:14: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/transclosure.hpp:11: /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:226:20: warning: shift count >= width of type [-Wshift-count-overflow] value |= value >> 32; ^ ~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:261:12: warning: shift count >= width of type [-Wshift-count-overflow] i |= i >> 32; ^ ~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:58: error: constant expression evaluates to 5351951779 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:58: note: insert an explicit cast to silence this issue 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:73: error: constant expression evaluates to 6743036717 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:73: note: insert an explicit cast to silence this issue 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:13: error: constant expression evaluates to 8495693897 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:13: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:28: error: constant expression evaluates to 10703903591 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:28: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:44: error: constant expression evaluates to 13486073473 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:44: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:60: error: constant expression evaluates to 16991387857 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:60: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:13: error: constant expression evaluates to 21407807219 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:13: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:29: error: constant expression evaluates to 26972146961 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:29: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:45: error: constant expression evaluates to 33982775741 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:45: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:61: error: constant expression evaluates to 42815614441 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:61: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:13: error: constant expression evaluates to 53944293929 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:13: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:29: error: constant expression evaluates to 67965551447 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:29: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:45: error: constant expression evaluates to 85631228929 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:45: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:61: error: constant expression evaluates to 107888587883 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:61: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:13: error: constant expression evaluates to 135931102921 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:13: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:30: error: constant expression evaluates to 171262457903 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:30: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:47: error: constant expression evaluates to 215777175787 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:47: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:64: error: constant expression evaluates to 271862205833 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:64: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast( ) fatal error: too many errors emitted, stopping now [-ferror-limit=] 2 warnings and 20 errors generated. *** [CMakeFiles/seqwish.dir/src/main.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build --- CMakeFiles/seqwish.dir/src/seqindex.cpp.o --- 1 error generated. *** [CMakeFiles/seqwish.dir/src/seqindex.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 2 errors make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** [CMakeFiles/seqwish.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 1 error make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 1 error make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqwish