From nobody Tue Jul 25 16:14:36 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4R9MYS4DYfz4pBRl for ; Tue, 25 Jul 2023 16:14:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4R9MYS2fWFz42wv for ; Tue, 25 Jul 2023 16:14:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690301676; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=1v6olEIBSGgIDLqDG7/EmWV9m4a208eZXl2hc9Us2Vk=; b=C4HSBrQiOrlz3hnngkEKqzs5bwJSoYUrAxJBAg+c15RwLbvgnK6/9luqGrJl8Y1YiiJXf4 S13qyydCEYkwDStoUGrbNIyIAgPzTSp1b5jKS/G4sD3fBAuSje7MuWJ8bX/w+DCYcq4Rwn oZAeRPcQ4YWE4H8bMD1YJaLfQHEMTO2pAxKUMcGBYl469n+OTH15FkhR2Zku76xINA2Ohe gwlYMlV97qyn6Jm8vBeyAKRedocTKb+gWygCYR7QQhLO6eNtY36yK5hDt8otxjYqL3GeqQ 5dI3DZQCmaudVvPgnKvy9TQKijnk0rzPRBwfO1e7X+FXPZJIpEVD2zUYcPxrFg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1690301676; a=rsa-sha256; cv=none; b=gOkQSQV20uWFX1gni4uXrM3D31m9dTOHh3ayWhC1ZMYDgZWRWp96piyPviKpBUP6Qqxxva DcTQU9C9tyYHhXnUQ1gi1+dQ63BjocpiTta/AJVRNV6JGqbHkAyrAEA1WzL70OKOa7xiin u+OkKQfi2xkDJGnm5pWLvJ5DJgJ0z3t2H2xoAgQroC7QtkPQtb50qC4TBsUpg2c99FWRX6 Dd4ZWStGWJTe3wVjP2stRyLZhUvp+vHyQLjoIjvDGZd/0FPBRhqVtotO+sjEQEgtsX//a4 V2WY/6m7Yz4TYYTPvnR2+6YVXSJljALJtuUccStHPdVSpj8LE6+Ep858fGl/uw== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4R9MYS1b82z16WH for ; Tue, 25 Jul 2023 16:14:36 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 2340 by beefy18.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy18.nyi.freebsd.org); Tue, 25 Jul 2023 16:14:36 +0000 To: yuri@FreeBSD.org Subject: [package - main-amd64-default][science/py-PyNE] Failed for py39-PyNE-0.7.7_4 in configure Cc: pkg-fallout@FreeBSD.org Date: Tue, 25 Jul 2023 16:14:36 +0000 Message-Id: <64bff4ec.2340.42ad1fc0@beefy18.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p629834653cee_s789df254cc/logs/py39-PyNE-0.7.7_4.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p629834653cee_s789df254cc Log: =>> Building science/py-PyNE build started at Tue Jul 25 16:09:46 UTC 2023 port directory: /usr/ports/science/py-PyNE package name: py39-PyNE-0.7.7_4 building for: FreeBSD main-amd64-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400093 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400093 Job Id: 08 !!! Jail is newer than host. (Jail: 1400093, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400093 UNAME_v=FreeBSD 14.0-CURRENT 1400093 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- DESTDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py39/stage F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/ local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/PyNE" EXAMPLESDIR="share/examples/PyNE" DATADIR="share/PyNE" WWWDIR="www/PyNE" ETCDIR="etc/PyNE" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/PyNE DOCSDIR=/usr/local/share/doc/PyNE EXAMPLESDIR=/usr/local/share/examples/PyNE WWWDIR=/usr/local/www/PyNE ETCDIR=/usr/local/etc/PyNE --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400093 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===> py39-PyNE-0.7.7_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.4.pkg [main-amd64-default-job-08] Installing pkg-1.20.4... [main-amd64-default-job-08] Extracting pkg-1.20.4: .......... done ===> py39-PyNE-0.7.7_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-PyNE-0.7.7_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PyNE-0.7.7_4 for building =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PyNE-0.7.7_4 for building => SHA256 Checksum OK for PyNE-0.7.7/decay.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/decay-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/prebuilt_nuc_data.h5. => SHA256 Checksum OK for PyNE-0.7.7/pyne-pyne-0.7.7_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PyNE-0.7.7_4 for building ===> Extracting for py39-PyNE-0.7.7_4 => SHA256 Checksum OK for PyNE-0.7.7/decay.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/decay-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/prebuilt_nuc_data.h5. => SHA256 Checksum OK for PyNE-0.7.7/pyne-pyne-0.7.7_GH0.tar.gz. =========================================================================== =================================================== | | |-| |-|___________________________________________________________________| | (@) l /\ / ( ( \ /\ l `\|-| l / V \ \ V \ l (@) l/ _) )_ \I `\ /' ` -- Pyne platform defined as: __LINUX__ -- Checking whether to build spatial solvers -- -- Checking CMAKE_CXX_COMPILER_ID: Clang -- Build spatial solvers: false -- Build type: Release -- PyNE Fast Compile: FALSE -- CMAKE_INSTALL_RPATH: /usr/local/lib:/usr/lib -- The ASM compiler identification is Clang with GNU-like command-line -- Found assembler: /usr/bin/cc -- CMake Install Prefix: /usr/local -- Dependency Root Dir (DEPS_ROOT_DIR): /usr -- Dependency Hints (DEPS_HINTS): HINTS;/usr -- Dependency Binary Hints (DEPS_BIN_HINTS): HINTS;/usr;/usr/bin -- Dependency Library Hints (DEPS_LIB_HINTS): HINTS;/usr;/usr/lib -- Dependency Include Hints (DEPS_INCLUDE_HINTS): HINTS;/usr/include -- HDF5 Root: /usr/local -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libhdf5_hl.so;hdf5-shared (found version "1.12.2") -- HDF5 Include directory: /usr/local/include -- HDF5 Library directories: /usr/local/lib -- HDF5 Libraries: hdf5-shared -- HDF5 library version: 1.12.2 -- MOAB Root: /usr/local -- Found MOAB: /usr/local/lib/libMOAB.so -- MOAB header files: /usr/local/include -- MOAB library: /usr/local/lib/libMOAB.so -- MOAB Found: TRUE -- Found PythonInterp: /usr/local/bin/python3.9 (found version "3.9.17") -- Found PythonLibs: /usr/local/lib/libpython3.9.so (found version "3.9.17") -- PYTHON_EXECUTABLE: /usr/local/bin/python3.9 -- PYTHON_SITE_PACKAGES: /usr/local/lib/python3.9/site-packages -- NUMPY_VERSION_STRING = 1.25.0 -- Found Numpy: 1.25.0 -- The Fortran compiler identification is GNU 12.2.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/bin/gfortran12 - skipped -- CMAKE_Fortran_IMPLICIT_LINK_DIRECTORIES: /usr/local/lib/gcc12;/usr/local/bin;/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd14.0/12.2.0;/usr/local/x86_64-portbld-freebsd14.0/lib -- CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES: gfortran;m;ssp_nonshared;gcc;gcc_s;quadmath;m;gcc;gcc_s;c;gcc;gcc_s -- Found Cython: /usr/local/bin/cython -- LIBS: hdf5-shared;/usr/local/lib/libpython3.9.so -- Extracting decay.tar.gz x decay.h x decay.cpp -- Extracting decay-linux-clang.tar.gz x decay-linux-clang.s -- Extracting cram.tar.gz x cram.c x cram.h -- Extracting cram-linux-clang.tar.gz x cram-linux-clang.s -- Not fast compiling decay.cpp since PyNE fast compile is disabled. -- Not fast compiling cram.c since PyNE fast compile is disabled. -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src: /usr/local/include;/usr/local/include;/usr/local/lib/python3.9/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/pyne: /usr/local/include;/usr/local/include;/usr/local/lib/python3.9/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src -- Modules to Cythonize: ace;bins;data;dtypes;endf;enrichment;extra_types;jsoncpp;material;material_library;nucname;particle;pyne_config;rxname;source;stlcontainers;tally;transmuters;_utils;source_sampling -- F2PY F90 FLAGS: -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/pyne/xs: /usr/local/include;/usr/local/include;/usr/local/lib/python3.9/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src -- Configuring done (2.9s) -- Generating done (0.1s) -- Build files have been written to: /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build [ 1%] Building C object src/CMakeFiles/pyne.dir/cram.c.o [ 1%] Built target ReplicatePythonSourceTree [ 2%] Building CXX object src/CMakeFiles/pyne.dir/decay.cpp.o [ 3%] Building CXX object src/CMakeFiles/pyne.dir/atomic_data.cpp.o [ 4%] Building CXX object src/CMakeFiles/pyne.dir/data.cpp.o [ 5%] Building CXX object src/CMakeFiles/pyne.dir/enrichment.cpp.o [ 6%] Building CXX object src/CMakeFiles/pyne.dir/enrichment_cascade.cpp.o [ 7%] Building CXX object src/CMakeFiles/pyne.dir/enrichment_symbolic.cpp.o [ 9%] Building CXX object src/CMakeFiles/pyne.dir/jsoncpp.cpp.o /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:2123:74: warning: implicit conversion from 'const Int64' (aka 'const long long') to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] JSON_ASSERT_MESSAGE( value_.real_ >= minInt64 && value_.real_ <= maxInt64, "Real out of Int64 range" ); ~~ ^~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:1429:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) ^~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:2149:67: warning: implicit conversion from 'const UInt64' (aka 'const unsigned long long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] JSON_ASSERT_MESSAGE( value_.real_ >= 0 && value_.real_ <= maxUInt64, "Real out of UInt64 range" ); ~~ ^~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:1429:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) ^~~~~~~~~ 2 warnings generated. [ 10%] Building CXX object src/CMakeFiles/pyne.dir/jsoncustomwriter.cpp.o [ 11%] Building CXX object src/CMakeFiles/pyne.dir/material.cpp.o [ 12%] Building CXX object src/CMakeFiles/pyne.dir/material_library.cpp.o [ 13%] Building CXX object src/CMakeFiles/pyne.dir/nucname.cpp.o [ 14%] Building CXX object src/CMakeFiles/pyne.dir/particle.cpp.o [ 15%] Building CXX object src/CMakeFiles/pyne.dir/source.cpp.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source.cpp:10: /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source.h:35:32: warning: non-void function does not return a value [-Wreturn-type] virtual std::string fluka() {} ^ 1 warning generated. [ 17%] Building CXX object src/CMakeFiles/pyne.dir/rxname.cpp.o [ 18%] Building CXX object src/CMakeFiles/pyne.dir/tally.cpp.o [ 19%] Building CXX object src/CMakeFiles/pyne.dir/transmuters.cpp.o [ 20%] Building CXX object src/CMakeFiles/pyne.dir/utils.cpp.o [ 21%] Building Fortran object src/CMakeFiles/pyne.dir/endftod.f90.o [ 22%] Building CXX object src/CMakeFiles/pyne.dir/measure.cpp.o [ 23%] Building CXX object src/CMakeFiles/pyne.dir/source_sampling.cpp.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source_sampling.cpp:2: /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source_sampling.h:78:23: warning: 'read_e_bounds' has C-linkage specified, but returns incomplete type 'std::vector' which could be incompatible with C [-Wreturn-type-c-linkage] std::vector read_e_bounds(std::string e_bounds_file); ^ 1 warning generated. [ 25%] Linking CXX shared library libpyne.so [ 25%] Built target pyne [ 27%] Compiling Cython CXX source for ace... [ 27%] Compiling Cython CXX source for bins... [ 28%] Building CXX object pyne/CMakeFiles/bins.dir/bins.cxx.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/bins.cxx:766: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ [ 29%] Building CXX object pyne/CMakeFiles/ace.dir/ace.cxx.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/ace.cxx:766: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. [ 30%] Linking CXX shared module bins.so [ 30%] Built target bins [ 31%] Compiling Cython CXX source for data... In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/ace.cxx:1017: /usr/include/c++/v1/complex:1401:48: error: no member named 'std' in namespace 'std'; did you mean simply 'std'? if (__x.real() == 0 && (__x.imag() == 0 || std::isnan(__x.imag()))) ^ /usr/include/c++/v1/complex:250:1: note: 'std' declared here _LIBCPP_BEGIN_NAMESPACE_STD ^ /usr/include/c++/v1/__config:663:49: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' # define _LIBCPP_BEGIN_NAMESPACE_STD namespace std { inline namespace _LIBCPP_ABI_NAMESPACE { ^ 1 warning and 1 error generated. --- pyne/CMakeFiles/ace.dir/ace.cxx.o --- *** [pyne/CMakeFiles/ace.dir/ace.cxx.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 1 error make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build --- pyne/CMakeFiles/ace.dir/all --- *** [pyne/CMakeFiles/ace.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build --- pyne/CMakeFiles/data.dir/all --- *** [pyne/CMakeFiles/data.dir/all] Error code 6 make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 2 errors make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 1 error make[1]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build Traceback (most recent call last): File "", line 1, in File "setup.py", line 481, in main() File "setup.py", line 464, in main main_safe(ns) File "setup.py", line 456, in main_safe main_body(ns) File "setup.py", line 438, in main_body rtn = subprocess.check_call(["make"] + ns.make_args, cwd=ns.build_dir) File "/usr/local/lib/python3.9/subprocess.py", line 373, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make', '-j2']' returned non-zero exit status 2. Writing atomic_data.h Writing atomic_data.cpp CMake command is cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local -DHDF5_ROOT=/usr/local -DHDF5_LIBRARIES=/usr/local/lib/libhdf5.so;/usr/local/lib/libhdf5_hl.so -DHDF5_LIBRARY_DIRS=/usr/local/lib -DHDF5_INCLUDE_DIRS=/usr/local/include -DWITH_MOAB=ON -DMOAB_ROOT=/usr/local -DPYNE_FAST_COMPILE=FALSE -DENABLE_SPATIAL_SOLVERS=ON -DPYTHON_EXECUTABLE=/usr/local/bin/python3.9 -------------------- If you are having issues building pyne, please report your problem to pyne-dev@googlegroups.com or look for help at http://pyne.io -------------------- *** Error code 1 Stop. make: stopped in /usr/ports/science/py-PyNE