[package - 124i386-default][biology/seqwish] Failed for seqwish-0.7.9 in build
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Date: Mon, 24 Jul 2023 18:15:42 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy5/data/124i386-default/e5b71726cc79/logs/seqwish-0.7.9.log Build URL: https://pkg-status.freebsd.org/beefy5/build.html?mastername=124i386-default&build=e5b71726cc79 Log: =>> Building biology/seqwish build started at Mon Jul 24 18:13:27 UTC 2023 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.9 building for: FreeBSD 124i386-default-job-13 12.4-RELEASE-p3 FreeBSD 12.4-RELEASE-p3 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1204000 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p3 UNAME_r=12.4-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/124i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/124i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/124i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.9: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_ INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.4-RELEASE-p3 OSREL=12.4 OSVERSION=1204000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.4.pkg [124i386-default-job-13] Installing pkg-1.20.4... [124i386-default-job-13] Extracting pkg-1.20.4: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user => seqwish-v0.7.9.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://github.com/ekg/seqwish/releases/download/v0.7.9/seqwish-v0.7.9.tar.gz seqwish-v0.7.9.tar.gz 11 MB 84 MBps 00s ===> Fetching all distfiles required by seqwish-0.7.9 for building =========================================================================== =======================<phase: checksum >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building ===> Extracting for seqwish-0.7.9 => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for seqwish-0.7.9 ===> Applying FreeBSD patches for seqwish-0.7.9 from /usr/ports/biology/seqwish/files =========================================================================== =======================<phase: build-depends >============================ ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.26.1_1.pkg [124i386-default-job-13] Installing cmake-core-3.26.1_1... [124i386-default-job-13] `-- Installing expat-2.5.0... [124i386-default-job-13] `-- Extracting expat-2.5.0: .......... done <snip> /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/paryfor-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-done [ 76%] Built target paryfor /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mio.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/build [ 77%] Creating directories for 'mio' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/tmp/mio-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-mkdir [ 78%] No download step for 'mio' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-download [ 78%] No update step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-update [ 79%] No patch step for 'mio' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-patch [ 80%] No configure step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-configure [ 81%] No build step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-build [ 82%] No install step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-install [ 82%] Completed 'mio' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mio-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-done [ 82%] Built target mio /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/seqwish.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/build [ 83%] Building CXX object CMakeFiles/seqwish.dir/src/utils.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/utils.cpp.o -MF CMakeFiles/seqwish.dir/src/utils.cpp.o.d -o CMakeFiles/seqwish.dir/src/utils.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/utils.cpp [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/tempfile.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/tempfile.cpp.o -MF CMakeFiles/seqwish.dir/src/tempfile.cpp.o.d -o CMakeFiles/seqwish.dir/src/tempfile.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/tempfile.cpp [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/main.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/main.cpp.o -MF CMakeFiles/seqwish.dir/src/main.cpp.o.d -o CMakeFiles/seqwish.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp:14: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/transclosure.hpp:11: /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:226:20: warning: shift count >= width of type [-Wshift-count-overflow] value |= value >> 32; ^ ~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:261:12: warning: shift count >= width of type [-Wshift-count-overflow] i |= i >> 32; ^ ~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:58: error: constant expression evaluates to 5351951779 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:58: note: insert an explicit cast to silence this issue 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:73: error: constant expression evaluates to 6743036717 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1146:73: note: insert an explicit cast to silence this issue 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu, ^~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:13: error: constant expression evaluates to 8495693897 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:13: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:28: error: constant expression evaluates to 10703903591 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:28: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:44: error: constant expression evaluates to 13486073473 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:44: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:60: error: constant expression evaluates to 16991387857 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1147:60: note: insert an explicit cast to silence this issue 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:13: error: constant expression evaluates to 21407807219 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:13: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:29: error: constant expression evaluates to 26972146961 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:29: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:45: error: constant expression evaluates to 33982775741 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:45: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:61: error: constant expression evaluates to 42815614441 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1148:61: note: insert an explicit cast to silence this issue 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:13: error: constant expression evaluates to 53944293929 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:13: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:29: error: constant expression evaluates to 67965551447 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:29: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:45: error: constant expression evaluates to 85631228929 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:45: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:61: error: constant expression evaluates to 107888587883 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1149:61: note: insert an explicit cast to silence this issue 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu, ^~~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:13: error: constant expression evaluates to 135931102921 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:13: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:30: error: constant expression evaluates to 171262457903 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:30: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:47: error: constant expression evaluates to 215777175787 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:47: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:64: error: constant expression evaluates to 271862205833 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1150:64: note: insert an explicit cast to silence this issue 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu, ^~~~~~~~~~~~~~~ static_cast<size_t>( ) /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1151:13: error: constant expression evaluates to 342524915839 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] 342524915839llu, 431554351609llu, 543724411781llu, 685049831731llu, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map/flat_hash_map.hpp:1151:13: note: insert an explicit cast to silence this issue 342524915839llu, 431554351609llu, 543724411781llu, 685049831731llu, ^~~~~~~~~~~~~~~ static_cast<size_t>( ) fatal error: too many errors emitted, stopping now [-ferror-limit=] 2 warnings and 20 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqwish