[package - main-i386-default][math/sympol] Failed for sympol-0.1.9_8 in build
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Date: Sun, 23 Jul 2023 02:38:03 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p150bed43bfd4_sbc310a95c5/logs/sympol-0.1.9_8.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p150bed43bfd4_sbc310a95c5
Log:
=>> Building math/sympol
build started at Sun Jul 23 02:37:51 UTC 2023
port directory: /usr/ports/math/sympol
package name: sympol-0.1.9_8
building for: FreeBSD main-i386-default-job-06 14.0-CURRENT FreeBSD 14.0-CURRENT 1400093 i386
maintained by: yuri@FreeBSD.org
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!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> sympol-0.1.9_8 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.4.pkg
[main-i386-default-job-06] Installing pkg-1.20.4...
[main-i386-default-job-06] Extracting pkg-1.20.4: .......... done
===> sympol-0.1.9_8 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of sympol-0.1.9_8
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by sympol-0.1.9_8 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by sympol-0.1.9_8 for building
=> SHA256 Checksum OK for tremlin-SymPol-v0.1.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by sympol-0.1.9_8 for building
===> Extracting for sympol-0.1.9_8
=> SHA256 Checksum OK for tremlin-SymPol-v0.1.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for sympol-0.1.9_8
===> Applying FreeBSD patches for sympol-0.1.9_8 from /usr/ports/math/sympol/files
===========================================================================
=======================<phase: build-depends >============================
<snip>
[main-i386-default-job-06] | | `-- Extracting gmp-6.2.1: .......... done
[main-i386-default-job-06] | | `-- Installing mpc-1.3.1_1...
[main-i386-default-job-06] | | `-- Installing mpfr-4.2.0_1,1...
[main-i386-default-job-06] | | `-- Extracting mpfr-4.2.0_1,1: .......... done
[main-i386-default-job-06] | | `-- Extracting mpc-1.3.1_1: ......... done
[main-i386-default-job-06] | `-- Extracting gcc12-12.2.0_6: .......... done
[main-i386-default-job-06] `-- Extracting blas-3.11.0_1: ........ done
[main-i386-default-job-06] `-- Installing lapack-3.11.0_1...
[main-i386-default-job-06] `-- Extracting lapack-3.11.0_1: .......... done
[main-i386-default-job-06] Extracting eigen-3.4.0_2: .......... done
=====
Message from gcc12-12.2.0_6:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> sympol-0.1.9_8 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===> Returning to build of sympol-0.1.9_8
===========================================================================
=======================<phase: lib-depends >============================
===> sympol-0.1.9_8 depends on shared library: libboost_program_options.so - found (/usr/local/lib/libboost_program_options.so)
===> sympol-0.1.9_8 depends on shared library: libcddgmp.so - not found
===> Installing existing package /packages/All/cddlib-0.94m.pkg
[main-i386-default-job-06] Installing cddlib-0.94m...
[main-i386-default-job-06] Extracting cddlib-0.94m: .......... done
===> sympol-0.1.9_8 depends on shared library: libcddgmp.so - found (/usr/local/lib/libcddgmp.so)
===> Returning to build of sympol-0.1.9_8
===> sympol-0.1.9_8 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for sympol-0.1.9_8
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/sympol/work/.build
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is Clang 16.0.6
-- The CXX compiler identification is Clang 16.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found GMP: /usr/local/include
-- Building SymPol version 0.1.9
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for getrusage
-- Looking for getrusage - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of uint
-- Check size of uint - done
-- Check size of ulong
-- Check size of ulong - failed
-- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "3.0")
-- Found Bliss: /usr/local/lib/libbliss.a
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES)
sympol/CMakeLists.txt:38 (find_package)
running /usr/local/bin/cmake -E copy_directory /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/data /wrkdirs/usr/ports/math/sympol/work/.build/data 2>&1
-- Configuring done (1.2s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/math/sympol/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for sympol-0.1.9_8
[ 3% 2/27] /usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/configuration.cpp.o -MF sympol/CMakeFiles/sympol.dir/configuration.cpp.o.d -o sympol/CMakeFi
les/sympol.dir/configuration.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp
FAILED: sympol/CMakeFiles/sympol.dir/configuration.cpp.o
/usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/configuration.cpp.o -MF sympol/CMakeFiles/sympol.dir/configuration.cpp.o.d -o sympol/CMakeFiles/sympol.d
ir/configuration.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:36:
In file included from /usr/local/include/permlib/transversal/schreier_tree_transversal.h:36:
In file included from /usr/local/include/permlib/transversal/transversal.h:36:
/usr/local/include/permlib/sorter/base_sorter.h:42:35: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class OrderedSorter : public std::binary_function<unsigned long, unsigned long, bool> {
~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:50:
/usr/local/include/permlib/predicate/pointwise_stabilizer_predicate.h:42:50: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class PointwiseStabilizerPredicate : public std::unary_function<typename PERM::ptr, bool> {
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:51:
/usr/local/include/permlib/predicate/stabilizes_point_predicate.h:42:46: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class StabilizesPointPredicate : public std::unary_function<unsigned long, bool> {
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
/usr/local/include/permlib/bsgs.h:457:47: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class StrongGeneratingSetSorter : public std::binary_function<typename PERM::ptr, typename PERM::ptr, bool> {
~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
4 errors generated.
[ 7% 2/27] /usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o -MF sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o.d -o sympol/CMakeFile
s/sympol.dir/polyhedronio.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp
FAILED: sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o
/usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o -MF sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o.d -o sympol/CMakeFiles/sympol.dir
/polyhedronio.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:36:
In file included from /usr/local/include/permlib/transversal/schreier_tree_transversal.h:36:
In file included from /usr/local/include/permlib/transversal/transversal.h:36:
/usr/local/include/permlib/sorter/base_sorter.h:42:35: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class OrderedSorter : public std::binary_function<unsigned long, unsigned long, bool> {
~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:50:
/usr/local/include/permlib/predicate/pointwise_stabilizer_predicate.h:42:50: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class PointwiseStabilizerPredicate : public std::unary_function<typename PERM::ptr, bool> {
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:51:
/usr/local/include/permlib/predicate/stabilizes_point_predicate.h:42:46: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class StabilizesPointPredicate : public std::unary_function<unsigned long, bool> {
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
/usr/local/include/permlib/bsgs.h:457:47: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class StrongGeneratingSetSorter : public std::binary_function<typename PERM::ptr, typename PERM::ptr, bool> {
~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
4 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/sympol