From nobody Sat Jul 15 02:23:56 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4R2sbd3K7Gz4n2sy for ; Sat, 15 Jul 2023 02:23:57 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4R2sbc3TSrz3mpy for ; Sat, 15 Jul 2023 02:23:56 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1689387836; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=GSpXwoB6vlLg6m1lww93wdd5Cc0w0e7N0AByp9vg6ks=; b=JppBvQwl+N5/HZCF6sbzUZ93Rx5kAW3Yzl1Cnj5+rY+fq0ZiB8EM6V2VWA2Q1nAwxngvKU DXXFgXve7EeotEZLLNcDuls/iqKveE2PGtJeOTcBqwZrO/wLAYWgPtXpxD5b/2R1etND9E lD3KqEMfsfXlqC+ppi1r0TCBtFMMElZynZTYuVKyXgvrnWtCtNb+CMRl0X7kVEdsdIHJDe tzYVbwNDC75znJB6EwAp5Q13tIGQ5wIDGhb3g7R7nD2h4YEwDP+qhLn36dPFfgDggbyVWR QlGkdYehkdP8mIkU7WLSZFpmIY1TAN5j3hmCI5ZK+4bGyFQhNOnyyePM/1vZOQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1689387836; a=rsa-sha256; cv=none; b=GbiQClVPRaukORF/lUrBqzvju25HzYY9dlt+whizr8orKhHE/LPmK0+SlWeCRCKwJaDov7 j6v6/pEuWCX/hy1zXLe46Rv2Yx+a0p64Ha3dGdnqktljosMhEHAkqnJXkoGW4QlXMScPwY QnZHKpPnI1Cdwfq/O8YjVylifydO/mQs8tDDAdPKI3UC2WwTnuJOu2DfAIK05oJYduGTc9 JgxZrZeC8pqw5mKvPvP6eVYSpg4AUo2anPGSHJgVvOrd4YBkBk9cTLFn25H/D4Wdd13BW9 /eaqj4ZrBgvL1jABKHOebC2Xp+CpACDk4B8pgT6zxQu+yUGcKnrOaibL0nHbCg== Received: from beefy17.nyi.freebsd.org (beefy17.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:20]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4R2sbc2T3czj3Q for ; Sat, 15 Jul 2023 02:23:56 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1017 by beefy17.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy17.nyi.freebsd.org); Sat, 15 Jul 2023 02:23:56 +0000 To: jwb@FreeBSD.org Subject: [package - main-i386-default][biology/bifrost] Failed for bifrost-1.2.1 in build Cc: pkg-fallout@FreeBSD.org Date: Sat, 15 Jul 2023 02:23:56 +0000 Message-Id: <64b2033c.1017.1d180b7@beefy17.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p8fb94260154e_s510fd83138/logs/bifrost-1.2.1.log Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p8fb94260154e_s510fd83138 Log: =>> Building biology/bifrost build started at Sat Jul 15 02:23:48 UTC 2023 port directory: /usr/ports/biology/bifrost package name: bifrost-1.2.1 building for: FreeBSD main-i386-default-job-04 14.0-CURRENT FreeBSD 14.0-CURRENT 1400093 i386 maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400093 Job Id: 04 !!! Jail is newer than host. (Jail: 1400093, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=i386 UNAME_m=i386 OSVERSION=1400093 UNAME_v=FreeBSD 14.0-CURRENT 1400093 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bifrost/work/.cache HOME=/wrkdirs/usr/ports/biology/bifrost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bifrost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bifrost/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bifrost/work/.cache HOME=/wrkdirs/usr/ports/biology/bifrost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bifrost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bifrost/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/bifrost/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTA LL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bifrost" EXAMPLESDIR="share/examples/bifrost" DATADIR="share/bifrost" WWWDIR="www/bifrost" ETCDIR="etc/bifrost" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bifrost DOCSDIR=/usr/local/share/doc/bifrost EXAMPLESDIR=/usr/local/share/examples/bifrost WWWDIR=/usr/local/www/bifrost ETCDIR=/usr/local/etc/bifrost --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400093 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===> bifrost-1.2.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.4.pkg [main-i386-default-job-04] Installing pkg-1.20.4... [main-i386-default-job-04] Extracting pkg-1.20.4: .......... done ===> bifrost-1.2.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of bifrost-1.2.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user => pmelsted-bifrost-v1.2.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/pmelsted/bifrost/tar.gz/v1.2.1?dummy=/pmelsted-bifrost-v1.2.1_GH0.tar.gz fetch: https://codeload.github.com/pmelsted/bifrost/tar.gz/v1.2.1?dummy=/pmelsted-bifrost-v1.2.1_GH0.tar.gz: size unknown fetch: https://codeload.github.com/pmelsted/bifrost/tar.gz/v1.2.1?dummy=/pmelsted-bifrost-v1.2.1_GH0.tar.gz: size of remote file is not known pmelsted-bifrost-v1.2.1_GH0.tar.gz 884 kB 6054 kBps 00s ===> Fetching all distfiles required by bifrost-1.2.1 for building =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by bifrost-1.2.1 for building => SHA256 Checksum OK for pmelsted-bifrost-v1.2.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by bifrost-1.2.1 for building ===> Extracting for bifrost-1.2.1 => SHA256 Checksum OK for pmelsted-bifrost-v1.2.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== (uint64_t)(_mm256_extract_epi64(total, 1)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1141:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 2)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1142:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 3)); \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' AVXPOPCNTFNC(union, _mm256_or_si256) ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1041:27: note: expanded from macro 'AVXPOPCNTFNC' return (uint64_t)(_mm256_extract_epi64(total, 0)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1042:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 1)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1043:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 2)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1044:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 3)); \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1139:27: note: expanded from macro 'AVXPOPCNTFNC' return (uint64_t)(_mm256_extract_epi64(total, 0)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1140:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 1)) + \ ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 6% 2/32] /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp FAILED: src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -march=native -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/CompactedDBG.hpp:27: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Common.hpp:47:47: error: constant expression evaluates to 4504192333906058 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing] static const size_t DNAbits[4] = {0x0ULL, 0x10008A0010008AULL, 0x0ULL, 0x0ULL}; ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Common.hpp:47:47: note: insert an explicit cast to silence this issue static const size_t DNAbits[4] = {0x0ULL, 0x10008A0010008AULL, 0x0ULL, 0x0ULL}; ^~~~~~~~~~~~~~~~~~~ static_cast( ) /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Common.hpp:47:47: warning: implicit conversion from 'unsigned long long' to 'const size_t' (aka 'const unsigned int') changes value from 4504192333906058 to 1048714 [-Wconstant-conversion] static const size_t DNAbits[4] = {0x0ULL, 0x10008A0010008AULL, 0x0ULL, 0x0ULL}; ~ ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Common.hpp:180:12: warning: shift count >= width of type [-Wshift-count-overflow] v |= v >> 32; ^ ~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Common.hpp:186:21: error: redefinition of 'rndup' BFG_INLINE uint32_t rndup(uint32_t v) { ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Common.hpp:172:19: note: previous definition is here BFG_INLINE size_t rndup(size_t v) { ^ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/CompactedDBG.hpp:28: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/File_Parser.hpp:10: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/FASTX_Parser.hpp:18:1: warning: shift count >= width of type [-Wshift-count-overflow] KSEQ_INIT(gzFile, gzread); ^~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:239:35: note: expanded from macro 'KSEQ_INIT' #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:234:2: note: expanded from macro 'KSEQ_INIT2' KSTREAM_INIT(type_t, __read, 16384) \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:157:2: note: expanded from macro 'KSTREAM_INIT' __KS_GETUNTIL(__read, __bufsize) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:130:5: note: expanded from macro '__KS_GETUNTIL' kroundup64(str->m); \ ^~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:95:105: note: expanded from macro 'kroundup64' #define kroundup64(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, (x)|=(x)>>32, ++(x)) ^ ~~ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/CompactedDBG.hpp:28: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/File_Parser.hpp:10: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/FASTX_Parser.hpp:18:1: warning: shift count >= width of type [-Wshift-count-overflow] KSEQ_INIT(gzFile, gzread); ^~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:239:35: note: expanded from macro 'KSEQ_INIT' #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:237:2: note: expanded from macro 'KSEQ_INIT2' __KSEQ_READ(SCOPE) ^~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:207:4: note: expanded from macro '__KSEQ_READ' kroundup64(seq->seq.m); /* rounded to the next closest 2^k */ \ ^~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/kseq.h:95:105: note: expanded from macro 'kroundup64' #define kroundup64(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, (x)|=(x)>>32, ++(x)) ^ ~~ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/CompactedDBG.hpp:28: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/File_Parser.hpp:230:64: warning: shift count >= width of type [-Wshift-count-overflow] else if ((reinterpret_cast(buffer)[0] >> 32) == BFG_GRAPHBIN_FORMAT_HEADER) ret_v = 3; // BFG ^ ~~ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/File_Parser.hpp:231:64: warning: shift count >= width of type [-Wshift-count-overflow] else if ((reinterpret_cast(buffer)[0] >> 32) == BFG_METABIN_FORMAT_HEADER) ret_v = 4; // BFI ^ ~~ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/CompactedDBG.hpp:32: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/KmerCovIndex.hpp:7: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/BitContainer.hpp:4: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.hh:1: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:215:18: error: use of undeclared identifier '_mm_popcnt_u64'; did you mean '_mm_popcnt_u32'? return (int) _mm_popcnt_u64(x); ^~~~~~~~~~~~~~ _mm_popcnt_u32 /usr/lib/clang/16/include/popcntintrin.h:33:1: note: '_mm_popcnt_u32' declared here _mm_popcnt_u32(unsigned int __A) ^ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/CompactedDBG.hpp:32: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/KmerCovIndex.hpp:7: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/BitContainer.hpp:4: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.hh:1: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:959:23: error: use of undeclared identifier '_mm256_extract_epi64' return (uint64_t)(_mm256_extract_epi64(total, 0)) + ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:960:23: error: use of undeclared identifier '_mm256_extract_epi64' (uint64_t)(_mm256_extract_epi64(total, 1)) + ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:961:23: error: use of undeclared identifier '_mm256_extract_epi64' (uint64_t)(_mm256_extract_epi64(total, 2)) + ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:962:23: error: use of undeclared identifier '_mm256_extract_epi64' (uint64_t)(_mm256_extract_epi64(total, 3)); ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' AVXPOPCNTFNC(or, _mm256_or_si256) ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1041:27: note: expanded from macro 'AVXPOPCNTFNC' return (uint64_t)(_mm256_extract_epi64(total, 0)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1042:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 1)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1043:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 2)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1044:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 3)); \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1139:27: note: expanded from macro 'AVXPOPCNTFNC' return (uint64_t)(_mm256_extract_epi64(total, 0)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1140:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 1)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1141:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 2)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1145:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1142:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 3)); \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' AVXPOPCNTFNC(union, _mm256_or_si256) ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1041:27: note: expanded from macro 'AVXPOPCNTFNC' return (uint64_t)(_mm256_extract_epi64(total, 0)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1042:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 1)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1043:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 2)) + \ ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1146:1: error: use of undeclared identifier '_mm256_extract_epi64' /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.2.1/src/roaring.h:1044:27: note: expanded from macro 'AVXPOPCNTFNC' (uint64_t)(_mm256_extract_epi64(total, 3)); \ ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 6 warnings and 20 errors generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/bifrost