[package - main-i386-default][math/py-fastcluster] Failed for py39-fastcluster-1.2.6_1 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Fri, 14 Jul 2023 21:38:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p8fb94260154e_s510fd83138/logs/py39-fastcluster-1.2.6_1.log
Build URL:      https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p8fb94260154e_s510fd83138
Log:

=>> Building math/py-fastcluster
build started at Fri Jul 14 21:38:38 UTC 2023
port directory: /usr/ports/math/py-fastcluster
package name: py39-fastcluster-1.2.6_1
building for: FreeBSD main-i386-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400093 i386
maintained by: sunpoet@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400089
Jail OSVERSION: 1400093
Job Id: 03




!!! Jail is newer than host. (Jail: 1400093, Host: 1400089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-fastcluster-1.2.6_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.4.pkg
[main-i386-default-job-03] Installing pkg-1.20.4...
[main-i386-default-job-03] Extracting pkg-1.20.4: .......... done
===>   py39-fastcluster-1.2.6_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-fastcluster-1.2.6_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6_1 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6_1 for building
===>  Extracting for py39-fastcluster-1.2.6_1
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-fastcluster-1.2.6_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-fastcluster-1.2.6_1 depends on package: py39-numpy>=0,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.25.0,1.pkg
[main-i386-default-job-03] Installing py39-numpy-1.25.0,1...
[main-i386-default-job-03] `-- Installing gcc12-12.2.0_6...
[main-i386-default-job-03] |   `-- Installing binutils-2.40_4,1...
[main-i386-default-job-03] |   | `-- Installing gettext-runtime-0.22...
[main-i386-default-job-03] |   |   `-- Installing indexinfo-0.3.1...
[main-i386-default-job-03] |   |   `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-03] |   | `-- Extracting gettext-runtime-0.22: .......... done
[main-i386-default-job-03] |   | `-- Installing zstd-1.5.5...
[main-i386-default-job-03] |   |   `-- Installing liblz4-1.9.4,1...
[main-i386-default-job-03] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[main-i386-default-job-03] |   | `-- Extracting zstd-1.5.5: .......... done
[main-i386-default-job-03] |   `-- Extracting binutils-2.40_4,1: .......... done
[main-i386-default-job-03] |   `-- Installing gmp-6.2.1...
[main-i386-default-job-03] |   `-- Extracting gmp-6.2.1: .......... done
[main-i386-default-job-03] |   `-- Installing mpc-1.3.1_1...
[main-i386-default-job-03] |   | `-- Installing mpfr-4.2.0_1,1...
[main-i386-default-job-03] |   | `-- Extracting mpfr-4.2.0_1,1: .......... done
[main-i386-default-job-03] |   `-- Extracting mpc-1.3.1_1: ......... done
[main-i386-default-job-03] `-- Extracting gcc12-12.2.0_6: .......... done
[main-i386-default-job-03] `-- Installing openblas-0.3.20_1,1...
[main-i386-default-job-03] `-- Extracting openblas-0.3.20_1,1: .......... done
[main-i386-default-job-03] `-- Installing py39-setuptools-63.1.0_1...
[main-i386-default-job-03] |   `-- Installing python39-3.9.17...
[main-i386-default-job-03] |   | `-- Installing libffi-3.4.4...
[main-i386-default-job-03] |   | `-- Extracting libffi-3.4.4: .......... done
[main-i386-default-job-03] |   | `-- Installing mpdecimal-2.5.1...
[main-i386-default-job-03] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[main-i386-default-job-03] |   | `-- Installing readline-8.2.1...
[main-i386-default-job-03] |   | `-- Extracting readline-8.2.1: .......... done
[main-i386-default-job-03] |   `-- Extracting python39-3.9.17: .......... done
[main-i386-default-job-03] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[main-i386-default-job-03] `-- Installing suitesparse-umfpack-6.1.1...
[main-i386-default-job-03] |   `-- Installing metis-5.1.0_9...
[main-i386-default-job-03] |   `-- Extracting metis-5.1.0_9: .......... done
[main-i386-default-job-03] |   `-- Installing suitesparse-amd-3.0.4...
[main-i386-default-job-03] |   | `-- Installing suitesparse-config-7.1.0...
[main-i386-default-job-03] |   | `-- Extracting suitesparse-config-7.1.0: .......... done
[main-i386-default-job-03] |   `-- Extracting suitesparse-amd-3.0.4: .......... done
[main-i386-default-job-03] |   `-- Installing suitesparse-camd-3.0.4...
[main-i386-default-job-03] |   `-- Extracting suitesparse-camd-3.0.4: .......... done
[main-i386-default-job-03] |   `-- Installing suitesparse-ccolamd-3.0.4...
[main-i386-default-job-03] |   `-- Extracting suitesparse-ccolamd-3.0.4: .......... done
[main-i386-default-job-03] |   `-- Installing suitesparse-cholmod-4.0.4...
[main-i386-default-job-03] |   | `-- Installing suitesparse-colamd-3.0.4...
[main-i386-default-job-03] |   | `-- Extracting suitesparse-colamd-3.0.4: .......... done
[main-i386-default-job-03] |   `-- Extracting suitesparse-cholmod-4.0.4: .......... done
[main-i386-default-job-03] `-- Extracting suitesparse-umfpack-6.1.1: .......... done
[main-i386-default-job-03] Extracting py39-numpy-1.25.0,1: .......... done
=====
Message from gcc12-12.2.0_6:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.17:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:

--
===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   py39-fastcluster-1.2.6_1 depends on package: py39-numpy>=0,1 - found
===>   Returning to build of py39-fastcluster-1.2.6_1
===>   py39-fastcluster-1.2.6_1 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-fastcluster-1.2.6_1 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py39-fastcluster-1.2.6_1
Fastcluster version: 1.2.6
Python version: 3.9.17 (main, Jul 13 2023, 01:36:19) 
[Clang 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py39-fastcluster-1.2.6_1
Fastcluster version: 1.2.6
Python version: 3.9.17 (main, Jul 13 2023, 01:36:19) 
[Clang 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-i386-cpython-39
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-i386-cpython-39
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-i386-cpython-39
creating build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
        ^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-i386/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 165.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0.	Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src/fastcluster_python.o
1.	<eof> parser at end of file
2.	Per-file LLVM IR generation
3.	/usr/include/c++/v1/__algorithm/fill_n.h:38:1: Generating code for declaration 'std::fill_n'
 #0 0x055b46e4 (/usr/bin/cc+0x55b46e4)
 #1 0x055b4b40 (/usr/bin/cc+0x55b4b40)
 #2 0x055b29fe (/usr/bin/cc+0x55b29fe)
 #3 0x0555b9b1 (/usr/bin/cc+0x555b9b1)
 #4 0x27003e19 (/lib/libthr.so.3+0x18e19)
 #5 0x270032e9 (/lib/libthr.so.3+0x182e9)
 #6 0xffffe294 ([vdso]+0x294)
 #7 0x2728a97f _thr_kill (/lib/libc.so.7+0x12097f)
 #8 0x27208e7b __raise (/lib/libc.so.7+0x9ee7b)
 #9 0x272b32ab abort (/lib/libc.so.7+0x1492ab)
#10 0x271ed69c (/lib/libc.so.7+0x8369c)
#11 0x02b4af76 (/usr/bin/cc+0x2b4af76)
#12 0x02b4aac6 (/usr/bin/cc+0x2b4aac6)
#13 0x02c1181b (/usr/bin/cc+0x2c1181b)
#14 0x02bf8954 (/usr/bin/cc+0x2bf8954)
#15 0x02b22d29 (/usr/bin/cc+0x2b22d29)
#16 0x02b23c40 (/usr/bin/cc+0x2b23c40)
#17 0x02afb911 (/usr/bin/cc+0x2afb911)
#18 0x02afaa15 (/usr/bin/cc+0x2afaa15)
#19 0x02b46094 (/usr/bin/cc+0x2b46094)
#20 0x02b44fab (/usr/bin/cc+0x2b44fab)
#21 0x02c08ce7 (/usr/bin/cc+0x2c08ce7)
#22 0x02bf8954 (/usr/bin/cc+0x2bf8954)
#23 0x02b68801 (/usr/bin/cc+0x2b68801)
#24 0x02b651f9 (/usr/bin/cc+0x2b651f9)
#25 0x02b70f1f (/usr/bin/cc+0x2b70f1f)
#26 0x02b53f58 (/usr/bin/cc+0x2b53f58)
#27 0x02b54a7a (/usr/bin/cc+0x2b54a7a)
#28 0x0261f338 (/usr/bin/cc+0x261f338)
#29 0x0261779c (/usr/bin/cc+0x261779c)
#30 0x02608810 (/usr/bin/cc+0x2608810)
#31 0x02608839 (/usr/bin/cc+0x2608839)
#32 0x02608839 (/usr/bin/cc+0x2608839)
#33 0x02608839 (/usr/bin/cc+0x2608839)
#34 0x02608839 (/usr/bin/cc+0x2608839)
#35 0x02605d1d (/usr/bin/cc+0x2605d1d)
#36 0x0325b2cc (/usr/bin/cc+0x325b2cc)
#37 0x0325864c (/usr/bin/cc+0x325864c)
#38 0x0379d199 (/usr/bin/cc+0x379d199)
#39 0x03194d04 (/usr/bin/cc+0x3194d04)
#40 0x03256c45 (/usr/bin/cc+0x3256c45)
#41 0x031945ea (/usr/bin/cc+0x31945ea)
#42 0x031141de (/usr/bin/cc+0x31141de)
#43 0x03251a13 (/usr/bin/cc+0x3251a13)
#44 0x025a904d (/usr/bin/cc+0x25a904d)
#45 0x025b8447 (/usr/bin/cc+0x25b8447)
#46 0x02fb03d3 (/usr/bin/cc+0x2fb03d3)
#47 0x0555b73b (/usr/bin/cc+0x555b73b)
#48 0x02fafe1f (/usr/bin/cc+0x2fafe1f)
#49 0x02f75c9f (/usr/bin/cc+0x2f75c9f)
#50 0x02f75f63 (/usr/bin/cc+0x2f75f63)
#51 0x02f91bbb (/usr/bin/cc+0x2f91bbb)
#52 0x025b7a47 (/usr/bin/cc+0x25b7a47)
#53 0x271df615 __libc_start1 (/lib/libc.so.7+0x75615)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152)
Target: i386-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg: 
********************

PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-48612b.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-48612b.sh
cc: note: diagnostic msg: 

********************
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1

Stop.
make: stopped in /usr/ports/math/py-fastcluster