[package - 131arm64-default][biology/vcflib] Failed for vcflib-1.0.5_1 in build
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Date: Wed, 25 Jan 2023 18:38:23 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/131arm64-default/08587f681899/logs/vcflib-1.0.5_1.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131arm64-default&build=08587f681899
Log:
=>> Building biology/vcflib
build started at Wed Jan 25 18:37:02 UTC 2023
port directory: /usr/ports/biology/vcflib
package name: vcflib-1.0.5_1
building for: FreeBSD 131arm64-default-job-07 13.1-RELEASE-p5 FreeBSD 13.1-RELEASE-p5 arm64
maintained by: jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> vcflib-1.0.5_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[131arm64-default-job-07] Installing pkg-1.19.0...
[131arm64-default-job-07] Extracting pkg-1.19.0: .......... done
===> vcflib-1.0.5_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of vcflib-1.0.5_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
=> ekg-vcflib-v1.0.5_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/ekg/vcflib/tar.gz/v1.0.5?dummy=/ekg-vcflib-v1.0.5_GH0.tar.gz
fetch: https://codeload.github.com/ekg/vcflib/tar.gz/v1.0.5?dummy=/ekg-vcflib-v1.0.5_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/ekg/vcflib/tar.gz/v1.0.5?dummy=/ekg-vcflib-v1.0.5_GH0.tar.gz: size of remote file is not known
ekg-vcflib-v1.0.5_GH0.tar.gz 22 MB 5401 kBps 04s
=> vcflib-tabixpp-v1.1.2_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/vcflib/tabixpp/tar.gz/v1.1.2?dummy=/vcflib-tabixpp-v1.1.2_GH0.tar.gz
fetch: https://codeload.github.com/vcflib/tabixpp/tar.gz/v1.1.2?dummy=/vcflib-tabixpp-v1.1.2_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/vcflib/tabixpp/tar.gz/v1.1.2?dummy=/vcflib-tabixpp-v1.1.2_GH0.tar.gz: size of remote file is not known
vcflib-tabixpp-v1.1.2_GH0.tar.gz 6962 B 8670 kBps 00s
=> smarco-WFA2-lib-v2.3_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/smarco/WFA2-lib/tar.gz/v2.3?dummy=/smarco-WFA2-lib-v2.3_GH0.tar.gz
fetch: https://codeload.github.com/smarco/WFA2-lib/tar.gz/v2.3?dummy=/smarco-WFA2-lib-v2.3_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/smarco/WFA2-lib/tar.gz/v2.3?dummy=/smarco-WFA2-lib-v2.3_GH0.tar.gz: size of remote file is not known
smarco-WFA2-lib-v2.3_GH0.tar.gz 4051 kB 5502 kBps 01s
===> Fetching all distfiles required by vcflib-1.0.5_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.5_1 for building
=> SHA256 Checksum OK for ekg-vcflib-v1.0.5_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-bb33265_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
=> SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-aa59377_GH0.tar.gz.
=> SHA256 Checksum OK for edawson-libVCFH-44b6580_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-68733cd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-2610e25_GH0.tar.gz.
=> SHA256 Checksum OK for simd-everywhere-simde-no-tests-9af03cd_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-tabixpp-v1.1.2_GH0.tar.gz.
=> SHA256 Checksum OK for smarco-WFA2-lib-v2.3_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
<snip>
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Checking for module 'htslib'
-- Found htslib, version 1.16
-- Checking for module 'tabixpp'
-- Package 'tabixpp', required by 'virtual:world', not found
-- /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/lib/libwfa.a
Pandoc needs to be installed to generate the man pages
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_SHARED_LINKER_FLAGS
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /wrkdirs/usr/ports/biology/vcflib/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for vcflib-1.0.5_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
/usr/local/bin/cmake -S/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 -B/wrkdirs/usr/ports/biology/vcflib/work/.build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/vcflib/work/.build//CMakeFiles/progress.marks
gmake -f CMakeFiles/Makefile2 all
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake -f CMakeFiles/ZIG-EXT.dir/build.make CMakeFiles/ZIG-EXT.dir/depend
gmake -f CMakeFiles/wfa-EXT.dir/build.make CMakeFiles/wfa-EXT.dir/depend
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
cd /wrkdirs/usr/ports/biology/vcflib/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles/ZIG-EXT.dir/DependInfo.cmake
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
cd /wrkdirs/usr/ports/biology/vcflib/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles/wfa-EXT.dir/DependInfo.cmake
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake -f CMakeFiles/wfa-EXT.dir/build.make CMakeFiles/wfa-EXT.dir/build
gmake -f CMakeFiles/ZIG-EXT.dir/build.make CMakeFiles/ZIG-EXT.dir/build
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
[ 0%] Creating directories for 'ZIG-EXT'
[ 1%] Creating directories for 'wfa-EXT'
/usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/vcflib/work/.build/wfa-EXT-prefix/tmp/wfa-EXT-mkdirs.cmake
/usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/tmp/ZIG-EXT-mkdirs.cmake
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/src/ZIG-EXT-stamp/ZIG-EXT-mkdir
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/wfa-EXT-prefix/src/wfa-EXT-stamp/wfa-EXT-mkdir
[ 2%] No download step for 'wfa-EXT'
[ 2%] No download step for 'ZIG-EXT'
/usr/local/bin/cmake -E echo_append
/usr/local/bin/cmake -E echo_append
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/src/ZIG-EXT-stamp/ZIG-EXT-download
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/wfa-EXT-prefix/src/wfa-EXT-stamp/wfa-EXT-download
[ 3%] No update step for 'wfa-EXT'
[ 3%] No update step for 'ZIG-EXT'
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig && /usr/local/bin/cmake -E echo_append
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib && /usr/local/bin/cmake -E echo_append
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/src/ZIG-EXT-stamp/ZIG-EXT-update
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/wfa-EXT-prefix/src/wfa-EXT-stamp/wfa-EXT-update
[ 4%] No patch step for 'wfa-EXT'
[ 4%] No patch step for 'ZIG-EXT'
/usr/local/bin/cmake -E echo_append
/usr/local/bin/cmake -E echo_append
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/src/ZIG-EXT-stamp/ZIG-EXT-patch
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/wfa-EXT-prefix/src/wfa-EXT-stamp/wfa-EXT-patch
[ 5%] No configure step for 'ZIG-EXT'
[ 5%] No configure step for 'wfa-EXT'
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig && /usr/local/bin/cmake -E echo_append
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib && /usr/local/bin/cmake -E echo_append
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/src/ZIG-EXT-stamp/ZIG-EXT-configure
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/wfa-EXT-prefix/src/wfa-EXT-stamp/wfa-EXT-configure
[ 6%] Performing build step for 'wfa-EXT'
[ 6%] Performing build step for 'ZIG-EXT'
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib && gmake BUILD_WFA_PARALLEL=1 BUILD_TOOLS=0 BUILD_EXAMPLES=0 CC_FLAGS=-fPIC setup lib_wfa
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig && /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig/compile.sh -Drelease-fast=true -freference-trace
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib'
gmake --directory=alignment all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/alignment'
cc -fPIC -I.. -c affine_penalties.c -o ../build/affine_penalties.o
cc -fPIC -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o
cc -fPIC -I.. -c cigar.c -o ../build/cigar.o
cc -fPIC -I.. -c score_matrix.c -o ../build/score_matrix.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/alignment'
gmake --directory=bindings/cpp all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/bindings/cpp'
c++ -fPIC -I../.. -c WFAligner.cpp -o ../../build/cpp/WFAligner.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/bindings/cpp'
gmake --directory=system all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/system'
cc -fPIC -I.. -c mm_allocator.c -o ../build/mm_allocator.o
cc -fPIC -I.. -c mm_stack.c -o ../build/mm_stack.o
cc -fPIC -I.. -c profiler_counter.c -o ../build/profiler_counter.o
cc -fPIC -I.. -c profiler_timer.c -o ../build/profiler_timer.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/system'
gmake --directory=utils all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/utils'
cc -fPIC -I.. -c bitmap.c -o ../build/bitmap.o
cc -fPIC -I.. -c commons.c -o ../build/commons.o
cc -fPIC -I.. -c dna_text.c -o ../build/dna_text.o
cc -fPIC -I.. -c heatmap.c -o ../build/heatmap.o
cc -fPIC -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o
cc -fPIC -I.. -c string_padded.c -o ../build/string_padded.o
cc -fPIC -I.. -c vector.c -o ../build/vector.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/utils'
gmake --directory=wavefront all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/wavefront'
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_align.c -o ../build/wavefront_align.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o
wavefront_bialign.c:690:23: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,&breakpoint,0);
^~~~~~~~~~~~~~~
wavefront_bialign.c:690:7: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,&breakpoint,0);
^~~~~~~~~~~~~~~
wavefront_bialign.c:743:25: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,
^~~~~~~~~~~~~~~
wavefront_bialign.c:743:9: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
affine_matrix_M,affine_matrix_M,
^~~~~~~~~~~~~~~
4 warnings generated.
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_bialigner.c -o ../build/wavefront_bialigner.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_components.c -o ../build/wavefront_components.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_display.c -o ../build/wavefront_display.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront_unialign.c -o ../build/wavefront_unialign.o
cc -fPIC -DWFA_PARALLEL -fopenmp -I.. -c wavefront.c -o ../build/wavefront.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib/wavefront'
ar -rsc lib/libwfa.a build/*.o 2> /dev/null
ar -rsc lib/libwfacpp.a build/*.o build/cpp/*.o 2> /dev/null
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[ 6%] No install step for 'wfa-EXT'
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[ 6%] Completed 'wfa-EXT'
/usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles
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gmake -f CMakeFiles/wfa.dir/build.make CMakeFiles/wfa.dir/depend
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cd /wrkdirs/usr/ports/biology/vcflib/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles/wfa.dir/DependInfo.cmake
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gmake -f CMakeFiles/wfa.dir/build.make CMakeFiles/wfa.dir/build
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[3]: Nothing to be done for 'CMakeFiles/wfa.dir/build'.
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[ 6%] Built target wfa
[ 7%] No install step for 'ZIG-EXT'
cd /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig && /usr/local/bin/cmake -E echo_append
[ 7%] Completed 'ZIG-EXT'
/usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles/ZIG-EXT-complete
/usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/vcflib/work/.build/ZIG-EXT-prefix/src/ZIG-EXT-stamp/ZIG-EXT-done
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
[ 7%] Built target ZIG-EXT
gmake -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
cd /wrkdirs/usr/ports/biology/vcflib/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5 /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build /wrkdirs/usr/ports/biology/vcflib/work/.build/CMakeFiles/vcflib.dir/DependInfo.cmake
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gmake -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
[ 8%] Building CXX object CMakeFiles/vcflib.dir/src/legacy.cpp.o
[ 8%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.4\" -DVERSION=\"1.0.4\" -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/include -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/fastahack -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/intervaltree -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/smithwaterman -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/multichoose -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/filevercmp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/c-progress-bar -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/tabixpp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig -fopenmp=libomp -march=native -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -flto=thin -fPIC -std=gnu++14 -MD -MT CMakeFiles/v
cflib.dir/src/legacy.cpp.o -MF CMakeFiles/vcflib.dir/src/legacy.cpp.o.d -o CMakeFiles/vcflib.dir/src/legacy.cpp.o -c /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/legacy.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.4\" -DVERSION=\"1.0.4\" -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/include -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/fastahack -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/intervaltree -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/smithwaterman -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/multichoose -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/filevercmp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/c-progress-bar -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/tabixpp -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/contrib/WFA2-lib -I/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/zig -fopenmp=libomp -march=native -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -flto=thin -fPIC -std=gnu++14 -MD -MT CMakeFiles/v
cflib.dir/src/vcf-c-api.cpp.o -MF CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o.d -o CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o -c /wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.5/src/vcf-c-api.cpp
c++: error: the clang compiler does not support '-march=native'
c++: error: the clang compiler does not support '-march=native'
gmake[3]: *** [CMakeFiles/vcflib.dir/build.make:93: CMakeFiles/vcflib.dir/src/legacy.cpp.o] Error 1
gmake[3]: *** Waiting for unfinished jobs....
gmake[3]: *** [CMakeFiles/vcflib.dir/build.make:79: CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[2]: *** [CMakeFiles/Makefile2:264: CMakeFiles/vcflib.dir/all] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
gmake[1]: *** [Makefile:149: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/.build'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/vcflib