[package - main-amd64-default][math/igraph] Failed for igraph-0.9.8_2 in build
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Date: Sun, 26 Feb 2023 13:46:02 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: wen@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/pc3dd65404e10_s429ba161fb/logs/igraph-0.9.8_2.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=pc3dd65404e10_s429ba161fb
Log:
=>> Building math/igraph
build started at Sun Feb 26 13:45:44 UTC 2023
port directory: /usr/ports/math/igraph
package name: igraph-0.9.8_2
building for: FreeBSD main-amd64-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400081 amd64
maintained by: wen@FreeBSD.org
Makefile ident:
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Jail OSVERSION: 1400081
Job Id: 08
!!! Jail is newer than host. (Jail: 1400081, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> igraph-0.9.8_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-amd64-default-job-08] Installing pkg-1.19.1_1...
[main-amd64-default-job-08] Extracting pkg-1.19.1_1: .......... done
===> igraph-0.9.8_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of igraph-0.9.8_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by igraph-0.9.8_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by igraph-0.9.8_2 for building
=> SHA256 Checksum OK for igraph-0.9.8.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by igraph-0.9.8_2 for building
===> Extracting for igraph-0.9.8_2
=> SHA256 Checksum OK for igraph-0.9.8.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for igraph-0.9.8_2
===========================================================================
=======================<phase: build-depends >============================
===> igraph-0.9.8_2 depends on executable: bison - not found
===> Installing existing package /packages/All/bison-3.8.2,1.pkg
[main-amd64-default-job-08] Installing bison-3.8.2,1...
[main-amd64-default-job-08] `-- Installing gettext-runtime-0.21.1...
[main-amd64-default-job-08] | `-- Installing indexinfo-0.3.1...
<snip>
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from slurm-wlm-20.02.7_2:
--
===> NOTICE:
The slurm-wlm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from mpich-3.4.3_1:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> igraph-0.9.8_2 depends on shared library: libarpack.so - found (/usr/local/lib/libarpack.so)
===> Returning to build of igraph-0.9.8_2
===> igraph-0.9.8_2 depends on shared library: libcxsparse.so - not found
===> Installing existing package /packages/All/suitesparse-cxsparse-4.0.3.pkg
[main-amd64-default-job-08] Installing suitesparse-cxsparse-4.0.3...
[main-amd64-default-job-08] `-- Installing openblas-0.3.20,1...
[main-amd64-default-job-08] `-- Extracting openblas-0.3.20,1: .......... done
[main-amd64-default-job-08] `-- Installing suitesparse-config-7.0.1...
[main-amd64-default-job-08] `-- Extracting suitesparse-config-7.0.1: .......... done
[main-amd64-default-job-08] Extracting suitesparse-cxsparse-4.0.3: .......... done
===> igraph-0.9.8_2 depends on shared library: libcxsparse.so - found (/usr/local/lib/libcxsparse.so)
===> Returning to build of igraph-0.9.8_2
===> igraph-0.9.8_2 depends on shared library: libglpk.so - not found
===> Installing existing package /packages/All/glpk-5.0.pkg
[main-amd64-default-job-08] Installing glpk-5.0...
[main-amd64-default-job-08] Extracting glpk-5.0: .......... done
===> igraph-0.9.8_2 depends on shared library: libglpk.so - found (/usr/local/lib/libglpk.so)
===> Returning to build of igraph-0.9.8_2
===> igraph-0.9.8_2 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so)
===> igraph-0.9.8_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> igraph-0.9.8_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for igraph-0.9.8_2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/igraph/work/.build
-- Version number: 0.9.8
-- The C compiler identification is Clang 15.0.7
-- The CXX compiler identification is Clang 15.0.7
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_NO_VARARGS_FLAG
-- Performing Test COMPILER_SUPPORTS_NO_VARARGS_FLAG - Success
-- Performing Test COMPILER_SUPPORTS_NO_UNKNOWN_WARNING_OPTION_FLAG
-- Performing Test COMPILER_SUPPORTS_NO_UNKNOWN_WARNING_OPTION_FLAG - Success
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found FLEX: /usr/bin/flex (found version "2.6.4")
-- Found BISON: /usr/local/bin/bison (found version "3.8.2")
-- Looking for expm1
-- Looking for expm1 - found
-- Looking for fmin
-- Looking for fmin - found
-- Looking for finite
-- Looking for finite - found
-- Looking for isfinite
-- Looking for isfinite - found
-- Looking for log2
-- Looking for log2 - found
-- Looking for log1p
-- Looking for log1p - found
-- Looking for rint
-- Looking for rint - found
-- Looking for rintf
-- Looking for rintf - found
-- Looking for round
-- Looking for round - found
-- Looking for stpcpy
-- Looking for stpcpy - found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for _stricmp
-- Looking for _stricmp - not found
-- Looking for _LIBCPP_VERSION
-- Looking for _LIBCPP_VERSION - found
-- Looking for __GLIBCXX__
-- Looking for __GLIBCXX__ - not found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Performing Test HAVE_ENABLE_NEW_DTAGS
-- Performing Test HAVE_ENABLE_NEW_DTAGS - Success
-- Disabling new dtags for testing to use RPATH to ensure the correct library is found.
-- Found Python3: /usr/local/bin/python3.9 (found version "3.9.16") found components: Interpreter
--
-- -----[ Build configuration ]----
-- Version: 0.9.8
-- CMake build type: Release
-- Library type: shared
--
-- ----------[ Features ]----------
-- GLPK for optimization: yes
-- Reading GraphML files: yes
-- Thread-local storage: no
-- Link-time optimization: no
--
-- --------[ Dependencies ]--------
-- ARPACK: yes
-- BISON: yes
-- BLAS: yes
-- CXSparse: yes
-- FLEX: yes
-- GLPK: yes
-- GMP: yes
-- LAPACK: yes
-- LibXml2: yes
-- OpenMP: yes
-- PLFIT: vendored
--
-- -----------[ Testing ]----------
-- Diff tool: diff
-- Sanitizers: none
-- Code coverage: no
-- Verify 'finally' stack: no
--
-- --------[ Documentation ]-------
-- HTML: no
-- PDF: no
--
-- igraph configured successfully.
--
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /wrkdirs/usr/ports/math/igraph/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for igraph-0.9.8_2
[ 0% 2/265] /usr/bin/cc -DIGRAPH_STATIC -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/include -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o -MF vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o.d -o vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit/gss.c
FAILED: vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o
/usr/bin/cc -DIGRAPH_STATIC -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/include -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o -MF vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o.d -o vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit/gss.c
In file included from /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit/gss.c:24:
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit/gss.h:132:40: error: a function declaration without a prototype is deprecated in all versions of C [-Werror,-Wstrict-prototypes]
unsigned short int gss_get_warning_flag();
^
void
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit/gss.c:60:40: error: a function declaration without a prototype is deprecated in all versions of C [-Werror,-Wstrict-prototypes]
unsigned short int gss_get_warning_flag() {
^
void
2 errors generated.
[ 0% 2/265] /usr/bin/cc -DIGRAPH_STATIC -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/include -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit_vendored.dir/hzeta.c.o -MF vendor/plfit/CMakeFiles/plfit_vendored.dir/hzeta.c.o.d -o vendor/plfit/CMakeFiles/plfit_vendored.dir/hzeta.c.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.8/vendor/plfit/hzeta.c
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/igraph