From nobody Sun Feb 19 20:12:34 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4PKcD34JHLz3rx9H for ; Sun, 19 Feb 2023 20:12:35 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4PKcD30vZFz44lC for ; Sun, 19 Feb 2023 20:12:35 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1676837555; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=GnConyIZVZk8YheXmZq8Zw2kU5sxN/NWjY/juxBgJY0=; b=xKx0YbD5zxbi+96zDyQyUWiLnw7JFqSAwFjlirNp8jApZoLGMxwlZesl4GuC8d/zFncEx8 MYURHBiWnGyCIALClymeSnRu0fxHkohPGe5QVvsgKkfYvg06GEmNrsDvpGPLD5yO8/nOZD HRh7YGfFiDDiCBgZiuas7vzwL2Uz3hi7jc3784bM2l/gYz6WXv3R1rsRrO1Bt3Xcyf595v VjQokmlkfvIaRLzwhKfLxYtspMX/ScCY9aGAup0RMMOOH0LWclfv2xKC9CckebtIhit52c ww69dUrIN3JZUH0sXvYlgwDm3HhAHmFLlvpuo/Ai2wV7vZVB7guj/Neiuj4y3g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1676837555; a=rsa-sha256; cv=none; b=X2UGhA6d+GqLCYgj0x3qQYFbENtEkiMNRoqo7gFm4XPRE6Ks9rH0aUrI6mYrR4gjDZfGjT vKpCJ/yl6vtOhK0GfR+tpBgdtoDGNpe0NiAfGczjTIDhIQRFsph3ULrL7PwYXAjZtre/hR x/TDwI9DeQIQlLuoZPmooq/5JsVGgVRQTfgrVtEle3s4Z2tas+lBXNw/gwPcnL7iumf2U8 9IqQaSOD+RDJAJmtYOGGZ9jShwoJSF/f9FWTjE+uluRlmpvrf1xF/vCLOnaW9+zZz55Sj3 kWmrMPev6S4v9yf+ESPPLjxv/hj2gLvIHMsRgfbn0LAOoFL5/DnfWqptCWC8mQ== Received: from foul1.nyi.freebsd.org (foul1.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:25]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4PKcD272v3zFPJ for ; Sun, 19 Feb 2023 20:12:34 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul1.nyi.freebsd.org (localhost [127.0.0.1]) by foul1.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 31JKCY5B067182 for ; Sun, 19 Feb 2023 20:12:34 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul1.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 31JKCY9d067178; Sun, 19 Feb 2023 20:12:34 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sun, 19 Feb 2023 20:12:34 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202302192012.31JKCY9d067178@foul1.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-powerpc64-default][biology/emboss] Failed for emboss-6.6.0_6 in build X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul1/data/main-powerpc64-default/pb64d2f1e5acf_sc92790b3fb/logs/emboss-6.6.0_6.log Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=main-powerpc64-default&build=pb64d2f1e5acf_sc92790b3fb Log: =>> Building biology/emboss build started at Sun Feb 19 20:06:16 UTC 2023 port directory: /usr/ports/biology/emboss package name: emboss-6.6.0_6 building for: FreeBSD main-powerpc64-default-job-06 14.0-CURRENT FreeBSD 14.0-CURRENT 1400079 powerpc maintained by: wen@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1400079 Job Id: 06 !!! Jail is newer than host. (Jail: 1400079, Host: 1400073) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400079 UNAME_v=FreeBSD 14.0-CURRENT 1400079 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for emboss-6.6.0_6: DOCS=on: Build and/or install documentation X11=on: X11 (graphics) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/emboss/work/.cache HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/emboss/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/emboss/work/.cache HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/emboss/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include" LDFLAGS=" -L/usr/local/lib -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_P LUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG " MANPREFIX="/usr/local/emboss" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local/emboss LIB32DIR=lib DOCSDIR="share/EMBOSS/doc" EXAMPLESDIR="share/examples/emboss" DATADIR="share/EMBOSS" WWWDIR="www/emboss" ETCDIR="etc/emboss" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local/emboss DATADIR=/usr/local/emboss/share/EMBOSS PREFIX=/usr/local/emboss LOCALBASE=/usr/local DATADIR=/usr/local/emboss/share/EMBOSS DOCSDIR=/usr/local/emboss/share/EMBOSS/doc EXAMPLESDIR=/usr/local/emboss/share/examples/emboss WWWDIR=/usr/local/emboss/www/emboss ETCDIR=/usr/local/emboss/etc/emboss --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv2 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400079 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> emboss-6.6.0_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1.pkg [main-powerpc64-default-job-06] Installing pkg-1.19.1... [main-powerpc64-default-job-06] Extracting pkg-1.19.1: .......... done ===> emboss-6.6.0_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of emboss-6.6.0_6 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_6 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_6 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_6 for building ===> Extracting for emboss-6.6.0_6 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_6 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for emboss-6.6.0_6 ===> Applying FreeBSD patches for emboss-6.6.0_6 from /usr/ports/biology/emboss/files ^ trees.c:1203:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] trees.c:1222:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void copy_block(s, buf, len, header) ^ trees.c:1222:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] 21 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT inflate.lo -MD -MP -MF .deps/inflate.Tpo -c inflate.c -o inflate.o >/dev/null 2>&1 35 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT trees.lo -MD -MP -MF .deps/trees.Tpo -c trees.c -o trees.o >/dev/null 2>&1 mv -f .deps/trees.Tpo .deps/trees.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c -o uncompr.lo uncompr.c mv -f .deps/inflate.Tpo .deps/inflate.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c -o zutil.lo zutil.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c uncompr.c -fPIC -DPIC -o .libs/uncompr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c zutil.c -fPIC -DPIC -o .libs/zutil.o uncompr.c:24:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT uncompress (dest, destLen, source, sourceLen) ^ ./zlibemboss.h:102:33: note: expanded from macro 'uncompress' # define uncompress euncompress ^ zutil.c:133:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] const char * ZEXPORT zError(err) ^ ./zlibemboss.h:103:33: note: expanded from macro 'zError' # define zError ezError ^ zutil.c:300:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] voidpf ZLIB_INTERNAL zcalloc (opaque, items, size) ^ ./zlibemboss.h:104:33: note: expanded from macro 'zcalloc' # define zcalloc ezcalloc ^ zutil.c:310:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] void ZLIB_INTERNAL zcfree (opaque, ptr) ^ ./zlibemboss.h:105:33: note: expanded from macro 'zcfree' # define zcfree ezcfree ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c uncompr.c -o uncompr.o >/dev/null 2>&1 3 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c zutil.c -o zutil.o >/dev/null 2>&1 mv -f .deps/uncompr.Tpo .deps/uncompr.Plo mv -f .deps/zutil.Tpo .deps/zutil.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -version-info 2:0:1 -L/usr/local/lib -L/usr/local/lib -fstack-protector-strong -o libezlib.la -rpath /usr/local/emboss/lib adler32.lo compress.lo crc32.lo deflate.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo uncompr.lo zutil.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/adler32.o .libs/compress.o .libs/crc32.o .libs/deflate.o .libs/gzclose.o .libs/gzlib.o .libs/gzread.o .libs/gzwrite.o .libs/infback.o .libs/inffast.o .libs/inflate.o .libs/inftrees.o .libs/trees.o .libs/uncompr.o .libs/zutil.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -fstack-protector-strong -Wl,-soname -Wl,libezlib.so.1 -o .libs/libezlib.so.1.1.0 libtool: link: (cd ".libs" && rm -f "libezlib.so.1" && ln -s "libezlib.so.1.1.0" "libezlib.so.1") libtool: link: (cd ".libs" && rm -f "libezlib.so" && ln -s "libezlib.so.1.1.0" "libezlib.so") libtool: link: ar cru .libs/libezlib.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o libtool: link: ranlib .libs/libezlib.a libtool: link: ( cd ".libs" && rm -f "libezlib.la" && ln -s "../libezlib.la" "libezlib.la" ) gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' Making all in core gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake all-am gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c -o libajax_la-ajalign.lo `test -f 'ajalign.c' || echo './'`ajalign.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c -o libajax_la-ajarr.lo `test -f 'ajarr.c' || echo './'`ajarr.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c -fPIC -DPIC -o .libs/libajax_la-ajalign.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c -fPIC -DPIC -o .libs/libajax_la-ajarr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c -o libajax_la-ajalign.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c -o libajax_la-ajarr.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajalign.Tpo .deps/libajax_la-ajalign.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c -o libajax_la-ajassem.lo `test -f 'ajassem.c' || echo './'`ajassem.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c -fPIC -DPIC -o .libs/libajax_la-ajassem.o ajassem.c:1015:35: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int] ajErr("unrecognised cigar op: " + cigar->cigoperator[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ajassem.c:1015:35: note: use array indexing to silence this warning ajErr("unrecognised cigar op: " + cigar->cigoperator[i]); ^ & [ ] mv -f .deps/libajax_la-ajarr.Tpo .deps/libajax_la-ajarr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c -o libajax_la-ajassemread.lo `test -f 'ajassemread.c' || echo './'`ajassemread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c -fPIC -DPIC -o .libs/libajax_la-ajassemread.o 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c -o libajax_la-ajassem.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassem.Tpo .deps/libajax_la-ajassem.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c -o libajax_la-ajassemwrite.lo `test -f 'ajassemwrite.c' || echo './'`ajassemwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c -fPIC -DPIC -o .libs/libajax_la-ajassemwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c -o libajax_la-ajassemread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c -o libajax_la-ajassemwrite.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassemwrite.Tpo .deps/libajax_la-ajassemwrite.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c -o libajax_la-ajassert.lo `test -f 'ajassert.c' || echo './'`ajassert.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c -fPIC -DPIC -o .libs/libajax_la-ajassert.o mv -f .deps/libajax_la-ajassemread.Tpo .deps/libajax_la-ajassemread.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c -o libajax_la-ajbamindex.lo `test -f 'ajbamindex.c' || echo './'`ajbamindex.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c -fPIC -DPIC -o .libs/libajax_la-ajbamindex.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c -o libajax_la-ajassert.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassert.Tpo .deps/libajax_la-ajassert.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c -o libajax_la-ajbase.lo `test -f 'ajbase.c' || echo './'`ajbase.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c -fPIC -DPIC -o .libs/libajax_la-ajbase.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c -o libajax_la-ajbase.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c -o libajax_la-ajbamindex.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajbase.Tpo .deps/libajax_la-ajbase.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c -o libajax_la-ajcall.lo `test -f 'ajcall.c' || echo './'`ajcall.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c -fPIC -DPIC -o .libs/libajax_la-ajcall.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c -o libajax_la-ajcall.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajcall.Tpo .deps/libajax_la-ajcall.Plo mv -f .deps/libajax_la-ajbamindex.Tpo .deps/libajax_la-ajbamindex.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c -o libajax_la-ajcigar.lo `test -f 'ajcigar.c' || echo './'`ajcigar.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c -o libajax_la-ajcod.lo `test -f 'ajcod.c' || echo './'`ajcod.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c -fPIC -DPIC -o .libs/libajax_la-ajcigar.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c -fPIC -DPIC -o .libs/libajax_la-ajcod.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c -o libajax_la-ajcigar.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajcigar.Tpo .deps/libajax_la-ajcigar.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c -o libajax_la-ajdan.lo `test -f 'ajdan.c' || echo './'`ajdan.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c -fPIC -DPIC -o .libs/libajax_la-ajdan.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c -o libajax_la-ajdan.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdan.Tpo .deps/libajax_la-ajdan.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c -o libajax_la-ajdmx.lo `test -f 'ajdmx.c' || echo './'`ajdmx.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c -fPIC -DPIC -o .libs/libajax_la-ajdmx.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c -o libajax_la-ajcod.o >/dev/null 2>&1 ajdmx.c:1557:27: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if((scophit->Type == ajEDomainTypeSCOP)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ajdmx.c:1557:27: note: remove extraneous parentheses around the comparison to silence this warning if((scophit->Type == ajEDomainTypeSCOP)) ~ ^ ~ ajdmx.c:1557:27: note: use '=' to turn this equality comparison into an assignment if((scophit->Type == ajEDomainTypeSCOP)) ^~ = ajdmx.c:1559:33: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] else if ((scophit->Type == ajEDomainTypeCATH)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ajdmx.c:1559:33: note: remove extraneous parentheses around the comparison to silence this warning else if ((scophit->Type == ajEDomainTypeCATH)) ~ ^ ~ ajdmx.c:1559:33: note: use '=' to turn this equality comparison into an assignment else if ((scophit->Type == ajEDomainTypeCATH)) ^~ = 2 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c -o libajax_la-ajdmx.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdmx.Tpo .deps/libajax_la-ajdmx.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c -o libajax_la-ajdom.lo `test -f 'ajdom.c' || echo './'`ajdom.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c -fPIC -DPIC -o .libs/libajax_la-ajdom.o mv -f .deps/libajax_la-ajcod.Tpo .deps/libajax_la-ajcod.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c -o libajax_la-ajdomain.lo `test -f 'ajdomain.c' || echo './'`ajdomain.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c -fPIC -DPIC -o .libs/libajax_la-ajdomain.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c -o libajax_la-ajdom.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c -o libajax_la-ajdomain.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdomain.Tpo .deps/libajax_la-ajdomain.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c -o libajax_la-ajexcept.lo `test -f 'ajexcept.c' || echo './'`ajexcept.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c -fPIC -DPIC -o .libs/libajax_la-ajexcept.o mv -f .deps/libajax_la-ajdom.Tpo .deps/libajax_la-ajdom.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c -o libajax_la-ajfeat.lo `test -f 'ajfeat.c' || echo './'`ajfeat.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c -fPIC -DPIC -o .libs/libajax_la-ajfeat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c -o libajax_la-ajexcept.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajexcept.Tpo .deps/libajax_la-ajexcept.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c -o libajax_la-ajfeatread.lo `test -f 'ajfeatread.c' || echo './'`ajfeatread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c -fPIC -DPIC -o .libs/libajax_la-ajfeatread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c -o libajax_la-ajfeatread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c -o libajax_la-ajfeat.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajfeatread.Tpo .deps/libajax_la-ajfeatread.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c -o libajax_la-ajfeatwrite.lo `test -f 'ajfeatwrite.c' || echo './'`ajfeatwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c -fPIC -DPIC -o .libs/libajax_la-ajfeatwrite.o mv -f .deps/libajax_la-ajfeat.Tpo .deps/libajax_la-ajfeat.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c -o libajax_la-ajfile.lo `test -f 'ajfile.c' || echo './'`ajfile.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c -fPIC -DPIC -o .libs/libajax_la-ajfile.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c -o libajax_la-ajfeatwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c -o libajax_la-ajfile.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajfeatwrite.Tpo .deps/libajax_la-ajfeatwrite.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c -o libajax_la-ajfiledata.lo `test -f 'ajfiledata.c' || echo './'`ajfiledata.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c -fPIC -DPIC -o .libs/libajax_la-ajfiledata.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c -o libajax_la-ajfiledata.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajfiledata.Tpo .deps/libajax_la-ajfiledata.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c -o libajax_la-ajfileio.lo `test -f 'ajfileio.c' || echo './'`ajfileio.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include/mysql -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c ajfileio.c -fPIC -DPIC -o .libs/libajax_la-ajfileio.o ajfileio.c:271:7: warning: call to undeclared function 'ajSysFuncFgets'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] cp = ajSysFuncFgets(&buff[ipos], isize, file->fp); ^ ajfileio.c:271:5: error: incompatible integer to pointer conversion assigning to 'const char *' from 'int' [-Wint-conversion] cp = ajSysFuncFgets(&buff[ipos], isize, file->fp); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. gmake[5]: *** [Makefile:884: libajax_la-ajfileio.lo] Error 1 gmake[5]: *** Waiting for unfinished jobs.... mv -f .deps/libajax_la-ajfile.Tpo .deps/libajax_la-ajfile.Plo gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[4]: *** [Makefile:538: all] Error 2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[3]: *** [Makefile:329: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[2]: *** [Makefile:375: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make[1]: stopped in /usr/ports/biology/emboss *** Error code 1 Stop. make: stopped in /usr/ports/biology/emboss