[package - main-powerpc64le-default][biology/megahit] Failed for megahit-1.2.9_1 in build
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Date: Fri, 17 Feb 2023 23:49:41 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p010b19127cc8_sf3c043bb5/logs/megahit-1.2.9_1.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p010b19127cc8_sf3c043bb5
Log:
=>> Building biology/megahit
build started at Fri Feb 17 23:48:27 UTC 2023
port directory: /usr/ports/biology/megahit
package name: megahit-1.2.9_1
building for: FreeBSD main-powerpc64le-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400077 powerpc
maintained by: jwb@FreeBSD.org
Makefile ident:
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!!! Jail is newer than host. (Jail: 1400077, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[main-powerpc64le-default-job-03] Installing pkg-1.19.0...
[main-powerpc64le-default-job-03] Extracting pkg-1.19.0: .......... done
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of megahit-1.2.9_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===> Extracting for megahit-1.2.9_1
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for megahit-1.2.9_1
===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files
===========================================================================
=======================<phase: build-depends >============================
===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.25.1.pkg
[main-powerpc64le-default-job-03] Installing cmake-core-3.25.1...
[main-powerpc64le-default-job-03] `-- Installing expat-2.5.0...
[main-powerpc64le-default-job-03] `-- Extracting expat-2.5.0: .......... done
<snip>
CMAKE_COLOR_MAKEFILE
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-- Build files have been written to: /wrkdirs/usr/ports/biology/megahit/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for megahit-1.2.9_1
[ 0% 2/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:13:
/usr/lib/clang/14.0.5/include/ia32intrin.h:200:10: error: use of undeclared identifier '__builtin_ia32_readeflags_u32'
return __builtin_ia32_readeflags_u32();
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:206:3: error: use of undeclared identifier '__builtin_ia32_writeeflags_u32'
__builtin_ia32_writeeflags_u32(__f);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:288:10: error: use of undeclared identifier '__builtin_ia32_crc32qi'
return __builtin_ia32_crc32qi(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:309:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'
return __builtin_ia32_crc32hi(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:330:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
return __builtin_ia32_crc32si(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:358:10: error: use of undeclared identifier '__builtin_ia32_rdpmc'
return __builtin_ia32_rdpmc(__A);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:364:10: error: use of undeclared identifier '__builtin_ia32_rdtscp'
return __builtin_ia32_rdtscp(__A);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:373:3: error: use of undeclared identifier '__builtin_ia32_wbinvd'
__builtin_ia32_wbinvd();
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
/usr/lib/clang/14.0.5/include/immintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:17:
In file included from /usr/lib/clang/14.0.5/include/x86gprintrin.h:25:
/usr/lib/clang/14.0.5/include/crc32intrin.h:33:10: error: use of undeclared identifier '__builtin_ia32_crc32qi'
return __builtin_ia32_crc32qi(__C, __D);
^
/usr/lib/clang/14.0.5/include/crc32intrin.h:53:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'
return __builtin_ia32_crc32hi(__C, __D);
^
/usr/lib/clang/14.0.5/include/crc32intrin.h:73:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
return __builtin_ia32_crc32si(__C, __D);
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:21:
/usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:56:
/usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:31:
/usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:31:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:43:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:36:
/usr/lib/clang/14.0.5/include/ppc_wrappers/pmmintrin.h:35:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:36:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/pmmintrin.h:44:
/usr/lib/clang/14.0.5/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[ 1% 2/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
Assertion failed: (IsValid && "Failed to parse output constraint"), function EmitAsmStmt, file /usr/local/poudriere/jails/main-powerpc64le/usr/src/contrib/llvm-project/clang/lib/CodeGen/CGStmt.cpp, line 2276.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__=\"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src\" -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:8:13: Generating code for declaration 'HasPopcnt'
#0 0x00000000153c069c (/usr/bin/c+++0x153c069c)
#1 0x00000000153bdd88 (/usr/bin/c+++0x153bdd88)
#2 0x000000001534c828 (/usr/bin/c+++0x1534c828)
#3 0x000000001534caf0 (/usr/bin/c+++0x1534caf0)
#4 0x0000000817625b38 (/lib/libthr.so.3+0x2fb38)
c++: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)
Target: powerpc64le-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/main-687d0d.cpp
c++: note: diagnostic msg: /tmp/main-687d0d.sh
c++: note: diagnostic msg:
********************
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/megahit