From nobody Sat Dec 30 08:01:07 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4T2F7824kCz55pNY for ; Sat, 30 Dec 2023 08:01:08 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4T2F780Mzmz4KSD for ; Sat, 30 Dec 2023 08:01:08 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1703923268; a=rsa-sha256; cv=none; b=t+mUKWFpRtPImGZpcon8tWrzBFiASPf9M+zze94IEZywazTN8VGfq/0Gd/wfvw1G6XTIVf aeHfz4avMTnL9KNj2n7my8lFG+s7Q3Sp0e+aOU+aWRY2NbfBQrh5p5YejbbjpbzneOx+XP gvy18GdJsH3hM+0voPFD/Mnyqn/WX/2zJOI+Goui33stv5eNaD8myZrRNgFPXL/OK2Nu+y yZXdjeezdw495iaGsY5FVpF0AZ3WBLzv3TUCKjVeIqcjFCrG4Wkw20bDy1ZGT40lyQKnm6 4Px6vywevWmxplhSuYJncF/hhCJ1yu4hVD9GLxzgji3sRbI22cm8rnOkNxRlaw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1703923268; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=3u5uOPIln/LgHGO/blooP2vL2lpRwmjOdZjUjG/NPOQ=; b=XN5Zz6mM007XCY5nDt6yAOSg7cj2xFgiTeJBIPLx9709qqRW35rf/ZxjWJFLxE7bdUL/rP UvFv5c3tm3foHJjwO7ncx7Qrzo5ESow3QXUwMU9qs4dovoCVERUAJ8L15vEu6b+Q43R8Cy kHfHS4ibP43D0vvUNcaF4u2gIWJUngvkyNuhmb+dOPyWXXO32BpjXu+s7kRUHCItJA8892 0anvtDoKRQiW0+tc9OmeR33Ve06j4AhueicrZr+RFC1wNKFqK7p62onull9kviPkyaJ1Lu f5LBF5yO1GhVca4Q8y9B04Mbqi7jkpKoswVqFJtfWbWxZrmulr9z3UT+/qRwKQ== Received: from beefy17.nyi.freebsd.org (beefy17.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:20]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4T2F776G2JzhkM for ; Sat, 30 Dec 2023 08:01:07 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1fef by beefy17.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy17.nyi.freebsd.org); Sat, 30 Dec 2023 08:01:07 +0000 To: yuri@FreeBSD.org Subject: [package - main-i386-default][science/py-PyNE] Failed for py39-PyNE-0.7.7_4 in configure Cc: pkg-fallout@FreeBSD.org Date: Sat, 30 Dec 2023 08:01:07 +0000 Message-Id: <658fce43.1fef.689de887@beefy17.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/padd1ba90ee22_s84b4342c0d/logs/py39-PyNE-0.7.7_4.log Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=padd1ba90ee22_s84b4342c0d Log: =>> Building science/py-PyNE build started at Sat Dec 30 07:55:42 UTC 2023 port directory: /usr/ports/science/py-PyNE package name: py39-PyNE-0.7.7_4 building for: FreeBSD main-i386-default-job-12 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 i386 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2685 Aug 22 01:01 /usr/ports/science/py-PyNE/Makefile Ports top last git commit: add1ba90ee2 Ports top unclean checkout: no Port dir last git commit: ac878217a90 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500006 Jail OSVERSION: 1500008 Job Id: 12 !!! Jail is newer than host. (Jail: 1500008, Host: 1500006) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 OSVERSION=1500008 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 UNAME_m=i386 UNAME_p=i386 UNAME_r=15.0-CURRENT LOCALBASE=/usr/local UNAME_v=FreeBSD 15.0-CURRENT 1500008 USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-i386-default/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- DESTDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py39/stage F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/ local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/PyNE" EXAMPLESDIR="share/examples/PyNE" DATADIR="share/PyNE" WWWDIR="www/PyNE" ETCDIR="etc/PyNE" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/PyNE DOCSDIR=/usr/local/share/doc/PyNE EXAMPLESDIR=/usr/local/share/examples/PyNE WWWDIR=/usr/local/www/PyNE ETCDIR=/usr/local/etc/PyNE --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-PyNE-0.7.7_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [main-i386-default-job-12] Installing pkg-1.20.9... [main-i386-default-job-12] Extracting pkg-1.20.9: .......... done ===> py39-PyNE-0.7.7_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-PyNE-0.7.7_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PyNE-0.7.7_4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PyNE-0.7.7_4 for building => SHA256 Checksum OK for PyNE-0.7.7/decay.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/decay-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/prebuilt_nuc_data.h5. => SHA256 Checksum OK for PyNE-0.7.7/pyne-pyne-0.7.7_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PyNE-0.7.7_4 for building ===> Extracting for py39-PyNE-0.7.7_4 => SHA256 Checksum OK for PyNE-0.7.7/decay.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/decay-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/cram-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.7/prebuilt_nuc_data.h5. => SHA256 Checksum OK for PyNE-0.7.7/pyne-pyne-0.7.7_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-PyNE-0.7.7_4 ===> Applying FreeBSD patches for py39-PyNE-0.7.7_4 from /usr/ports/science/py-PyNE/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-PyNE-0.7.7_4 depends on executable: cmake - not found This warning is for project developers. Use -Wno-dev to suppress it. -- LIBS: hdf5-shared;/usr/local/lib/libpython3.9.so -- Extracting decay.tar.gz x decay.h x decay.cpp -- Extracting decay-linux-clang.tar.gz x decay-linux-clang.s -- Extracting cram.tar.gz x cram.c x cram.h -- Extracting cram-linux-clang.tar.gz x cram-linux-clang.s -- Not fast compiling decay.cpp since PyNE fast compile is disabled. -- Not fast compiling cram.c since PyNE fast compile is disabled. -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src: /usr/local/include;/usr/local/include;/usr/local/lib/python3.9/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/pyne: /usr/local/include;/usr/local/include;/usr/local/lib/python3.9/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src -- Modules to Cythonize: ace;bins;data;dtypes;endf;enrichment;extra_types;jsoncpp;material;material_library;nucname;particle;pyne_config;rxname;source;stlcontainers;tally;transmuters;_utils;source_sampling -- F2PY F90 FLAGS: -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/pyne/xs: /usr/local/include;/usr/local/include;/usr/local/lib/python3.9/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src -- Configuring done (4.2s) -- Generating done (0.1s) -- Build files have been written to: /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build [ 1%] Building C object src/CMakeFiles/pyne.dir/cram.c.o [ 2%] Building CXX object src/CMakeFiles/pyne.dir/decay.cpp.o [ 2%] Built target ReplicatePythonSourceTree [ 3%] Building CXX object src/CMakeFiles/pyne.dir/atomic_data.cpp.o [ 4%] Building CXX object src/CMakeFiles/pyne.dir/data.cpp.o [ 5%] Building CXX object src/CMakeFiles/pyne.dir/enrichment.cpp.o [ 6%] Building CXX object src/CMakeFiles/pyne.dir/enrichment_cascade.cpp.o [ 7%] Building CXX object src/CMakeFiles/pyne.dir/enrichment_symbolic.cpp.o [ 9%] Building CXX object src/CMakeFiles/pyne.dir/jsoncpp.cpp.o /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:2123:74: warning: implicit conversion from 'const Int64' (aka 'const long long') to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] 2123 | JSON_ASSERT_MESSAGE( value_.real_ >= minInt64 && value_.real_ <= maxInt64, "Real out of Int64 range" ); | ~~ ^~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:1429:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' 1429 | #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) | ^~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:2149:67: warning: implicit conversion from 'const UInt64' (aka 'const unsigned long long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] 2149 | JSON_ASSERT_MESSAGE( value_.real_ >= 0 && value_.real_ <= maxUInt64, "Real out of UInt64 range" ); | ~~ ^~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/jsoncpp.cpp:1429:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' 1429 | #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) | ^~~~~~~~~ 2 warnings generated. [ 10%] Building CXX object src/CMakeFiles/pyne.dir/jsoncustomwriter.cpp.o [ 11%] Building CXX object src/CMakeFiles/pyne.dir/material.cpp.o [ 12%] Building CXX object src/CMakeFiles/pyne.dir/material_library.cpp.o [ 13%] Building CXX object src/CMakeFiles/pyne.dir/nucname.cpp.o [ 14%] Building CXX object src/CMakeFiles/pyne.dir/particle.cpp.o [ 15%] Building CXX object src/CMakeFiles/pyne.dir/source.cpp.o [ 17%] Building CXX object src/CMakeFiles/pyne.dir/rxname.cpp.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source.cpp:10: /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source.h:35:32: warning: non-void function does not return a value [-Wreturn-type] 35 | virtual std::string fluka() {} | ^ 1 warning generated. [ 18%] Building CXX object src/CMakeFiles/pyne.dir/tally.cpp.o [ 19%] Building CXX object src/CMakeFiles/pyne.dir/transmuters.cpp.o [ 20%] Building CXX object src/CMakeFiles/pyne.dir/utils.cpp.o [ 21%] Building Fortran object src/CMakeFiles/pyne.dir/endftod.f90.o [ 22%] Building CXX object src/CMakeFiles/pyne.dir/measure.cpp.o [ 23%] Building CXX object src/CMakeFiles/pyne.dir/source_sampling.cpp.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source_sampling.cpp:2: /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/src/source_sampling.h:78:23: warning: 'read_e_bounds' has C-linkage specified, but returns incomplete type 'std::vector' which could be incompatible with C [-Wreturn-type-c-linkage] 78 | std::vector read_e_bounds(std::string e_bounds_file); | ^ 1 warning generated. [ 25%] Linking CXX shared library libpyne.so [ 25%] Built target pyne [ 26%] Compiling Cython CXX source for data... [ 27%] Compiling Cython CXX source for ace... [ 28%] Compiling Cython CXX source for bins... [ 29%] Building CXX object pyne/CMakeFiles/bins.dir/bins.cxx.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/bins.cxx:766: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ [ 30%] Building CXX object pyne/CMakeFiles/ace.dir/ace.cxx.o [ 31%] Building CXX object pyne/CMakeFiles/data.dir/data.cxx.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/ace.cxx:766: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/ace.cxx:1017: /usr/include/c++/v1/complex:1404:48: error: no member named 'std' in namespace 'std'; did you mean simply 'std'? 1404 | if (__x.real() == 0 && (__x.imag() == 0 || std::isnan(__x.imag()))) | ^ /usr/include/c++/v1/complex:249:1: note: 'std' declared here 249 | _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/include/c++/v1/__config:845:49: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 845 | # define _LIBCPP_BEGIN_NAMESPACE_STD namespace std { inline namespace _LIBCPP_ABI_NAMESPACE { | ^ In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/data.cxx:790: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/data.cxx:1018: /usr/include/c++/v1/complex:1404:48: error: no member named 'std' in namespace 'std'; did you mean simply 'std'? 1404 | if (__x.real() == 0 && (__x.imag() == 0 || std::isnan(__x.imag()))) | ^ /usr/include/c++/v1/complex:249:1: note: 'std' declared here 249 | _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/include/c++/v1/__config:845:49: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 845 | # define _LIBCPP_BEGIN_NAMESPACE_STD namespace std { inline namespace _LIBCPP_ABI_NAMESPACE { | ^ 1 warning generated. [ 32%] Linking CXX shared module bins.so [ 32%] Built target bins [ 34%] Compiling Cython CXX source for dtypes... /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/ace.cxx:35015:63: warning: result of comparison of constant 9007199254740992 with expression of type 'long' is always true [-Wtautological-constant-out-of-range-compare] 35015 | if ((8 * sizeof(long) <= 53 || likely(labs(a) <= ((PY_LONG_LONG)1 << 53))) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/ace.cxx:985:43: note: expanded from macro 'likely' 985 | #define likely(x) __builtin_expect(!!(x), 1) | ^ 1 warning and 1 error generated. [ 35%] Building CXX object pyne/CMakeFiles/dtypes.dir/dtypes.cxx.o --- pyne/CMakeFiles/data.dir/data.cxx.o --- *** [pyne/CMakeFiles/data.dir/data.cxx.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 1 error make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build --- pyne/CMakeFiles/data.dir/all --- *** [pyne/CMakeFiles/data.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 2 warnings and 1 error generated. --- pyne/CMakeFiles/ace.dir/ace.cxx.o --- *** [pyne/CMakeFiles/ace.dir/ace.cxx.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 1 error make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build --- pyne/CMakeFiles/ace.dir/all --- *** [pyne/CMakeFiles/ace.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build/pyne/dtypes.cxx:766: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ 1 warning generated. --- pyne/CMakeFiles/dtypes.dir/all --- *** [pyne/CMakeFiles/dtypes.dir/all] Error code 6 make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 3 errors make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build 1 error make[1]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py39/pyne-0.7.7/build Traceback (most recent call last): File "", line 1, in File "setup.py", line 481, in main() File "setup.py", line 464, in main main_safe(ns) File "setup.py", line 456, in main_safe main_body(ns) File "setup.py", line 438, in main_body rtn = subprocess.check_call(["make"] + ns.make_args, cwd=ns.build_dir) File "/usr/local/lib/python3.9/subprocess.py", line 373, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make', '-j3']' returned non-zero exit status 2. Writing atomic_data.h Writing atomic_data.cpp CMake command is cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local -DHDF5_ROOT=/usr/local -DHDF5_LIBRARIES=/usr/local/lib/libhdf5.so;/usr/local/lib/libhdf5_hl.so -DHDF5_LIBRARY_DIRS=/usr/local/lib -DHDF5_INCLUDE_DIRS=/usr/local/include -DWITH_MOAB=ON -DMOAB_ROOT=/usr/local -DPYNE_FAST_COMPILE=FALSE -DENABLE_SPATIAL_SOLVERS=ON -DPYTHON_EXECUTABLE=/usr/local/bin/python3.9 -------------------- If you are having issues building pyne, please report your problem to pyne-dev@googlegroups.com or look for help at http://pyne.io -------------------- *** Error code 1 Stop. make: stopped in /usr/ports/science/py-PyNE